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0
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136
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Hisat2 after the use of trimmomatic software: (ERR): hisat2-align exited with value 134
trimmomatic new tuxedo protocol rna-seq hisat2 written 22 days ago by swarajgaikwad15 • 0 • updated 22 days ago by ATpoint ♦ 13k
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114
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Trinity reads are not identical-
trimmomatic trinity rna-seq error assembly written 23 days ago by sneha.preha7 • 0
5
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1
answer
139
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1
answer
Trimmomatic "no such file or directory" error with reverse input
trimmomatic trimming written 6 weeks ago by emilyc • 0 • updated 6 weeks ago by finswimmer ♦ 9.9k
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0
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140
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0
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Problem in Sequence Length Distribution
trimmomatic quality sequence lenght fastqc written 7 weeks ago by vitorgomesbio • 0
2
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0
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282
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0
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Trimmomatic not trimming the adapter
trimmomatic small rna written 3 months ago by S • 80 • updated 9 weeks ago by Biostar ♦♦ 20
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0
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102
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0
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Trimmomatic confirmation, multiple indeces per sample?!
trimmomatic rnaseq trimming written 9 weeks ago by T_18 • 20 • updated 9 weeks ago by finswimmer ♦ 9.9k
7
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2
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202
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2
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How to save trimmomatic terminal summary to an output file?
trimmomatic written 10 weeks ago by DNAngel • 20
2
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0
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234
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5 follow
0
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Low percentage of Illumina reads retained after trimming with Trimmomatic
genome trimmomatic sequencing written 11 weeks ago by Bea • 0 • updated 11 weeks ago by ATpoint ♦ 13k
1
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0
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174
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0
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the lower unique mapping rate after Trimming
trimmomatic star rna-seq written 11 weeks ago by lilingjoyo • 30
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0
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123
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Cannot Generate Trimmomatic Output Files
trimmomatic rna-seq written 12 weeks ago by matthew.sinton • 0 • updated 12 weeks ago by finswimmer ♦ 9.9k
0
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1
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187
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1
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Trimmomatic Unknown Trimmer Error for Output File
trimmomatic rna-seq written 3 months ago by calvin.davey • 10
0
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1
answer
148
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1
answer
Threshold Quality Default Number
trimmomatic leading quality control threshold written 3 months ago by vitorgomesbio • 0 • updated 3 months ago by finswimmer ♦ 9.9k
1
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2
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2.7k
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5 follow
2
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Unable to access jarfile trimmomatic-0.35
trimmomatic paired end reads rna-seq written 17 months ago by Ambika • 20 • updated 4 months ago by kristina.mahan • 30
2
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2
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240
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2
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Trimmomatic execution removes the data from my fastq sequence file. What am I doing wrong?
trimmomatic written 5 months ago by kristina.mahan • 30
2
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0
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529
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0
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Error: Help understand Trimmomatic ZLIB input stream error
trimmomatic written 5 months ago by James Reeve • 40
1
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1
answer
517
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5 follow
1
answer
Trimmomatic only for removing adapters
trimmomatic rna-seq written 7 months ago by grant.hovhannisyan • 1.4k • updated 5 months ago by jenn.drummond • 50
9
votes
1
answer
461
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6 follow
1
answer
How to process paired end data (using fastq-dump) to get Fw and Rv files
trimmomatic fastq sra toolkit rna-seq written 8 months ago by 2405592M • 20
4
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2
answers
632
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2
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Using Trimommatic to only clip adapters on multiple fastq files.
trimmomatic rna-seq written 6 months ago by imesi • 20 • updated 6 months ago by biokoala ♦ 3.6k
2
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1
answer
318
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1
answer
How do you decide the minimum length for the adapter that needs trimming for small RNAseq
trimmomatic trimming smallrnaseq adapter written 7 months ago by MAPK • 1.3k
0
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0
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397
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0
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miRNA-seq Trimmomatic adapter file
trimmomatic adapter mirna-seq written 7 months ago by inah • 20 • updated 7 months ago by WouterDeCoster ♦ 36k
2
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3
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520
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6 follow
3
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Trim Paired-end Fastq Files
trimmomatic paired-end rna-seq written 7 months ago by yuabrahamliu • 40 • updated 7 months ago by h.mon ♦ 23k
3
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2
answers
402
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2
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How to determine which adapter to use while trimming?
trimmomatic ngs fastq adapter written 7 months ago by MAPK • 1.3k • updated 7 months ago by sschmeier • 80
4
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1
answer
752
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1
answer
Interpretation of Trimmomatic Results after Paired-End Adapter Trimming
trimmomatic adapter trimming rna-seq written 7 months ago by sevenless • 0 • updated 7 months ago by mastal511 • 2.0k
1
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1
answer
495
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1
answer
Trimmomatic adapter clipping removes many reads even if "keepBothReads" parameter is selected
trimmomatic illumina adapter trimming pair-end written 8 months ago by al-ash • 100 • updated 7 months ago by finswimmer ♦ 9.9k
1
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0
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443
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0
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Leftover adapter sequences after Trimmomatic trimming?
trimmomatic adapters trimming rna-seq written 7 months ago by annsun89 • 10 • updated 7 months ago by genomax ♦ 62k
0
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441
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0
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kmer content changes after trimming and removing adapters from reads
trimmomatic dnaseq fastqc written 7 months ago by serpalma.v • 20
8
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1.1k
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Which truseq trimmomatic adapters file to use when removing truseq adapters?
adapters trimmomatic rna-seq written 7 months ago by salamandra • 180
4
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1
answer
659
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1
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What is Trimmomatic -validatePairs, and how to use it?
trimmomatic written 8 months ago by jon.brate • 200 • updated 8 months ago by h.mon ♦ 23k
4
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2
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916
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2
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LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 8 months ago by grant.hovhannisyan • 1.4k • updated 8 months ago by YaGalbi • 1.4k
2
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0
answers
357
views
0
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Trimmomatic Error and Permission Denied
trimmomatic permission denied error linux written 9 months ago by boydmm6 • 0
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