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<prev • 112 results • page 1 of 4 • next >
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LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 22 months ago by grant.hovhannisyan • 1.9k • updated 5 days ago by leonardo.araque • 0
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0
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86
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error en trimmomatic
trimmomatic error written 12 days ago by laurapeaz_21315 • 0
7
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1
answer
172
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1
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removing overrepresented sequences from rna-seq
trimmomatic overrepresented sequences cutadapt written 4 weeks ago by anna • 10 • updated 4 weeks ago by h.mon ♦ 29k
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0
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80
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0
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Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic trinity assembly transcriptome written 6 weeks ago by Light92 • 20
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0
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101
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Trimmomatic : Why is output different? ; filtering with row -> q20 -> q30 vs row -> q30
trimmomatic fastq written 8 weeks ago by SSK • 10
3
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1
answer
179
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1
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How to process data from Illumina sequencing ?
genome trimmomatic data illumina sequencing written 11 weeks ago by vicslab • 0 • updated 11 weeks ago by Michael Dondrup ♦ 47k
2
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1
answer
172
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1
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Trimmomatic Error (Exception in thread "main" java)
trimmomatic next-gen written 3 months ago by sohinibanerjee.rs • 0 • updated 3 months ago by genomax ♦ 80k
1
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1
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151
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1
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Unknown trimmer, single end, i tried other solutions but not soved.
software error trimmomatic written 3 months ago by Adriel Rosa • 0 • updated 3 months ago by zx8754 ♦ 9.1k
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0
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430
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3' Tag-Seq / DE Analysis - FASTQC detects overrepresented sequences as well as fails per base & GC sequence content
trimmomatic tag-seq sortmerna rna-seq fastqc written 5 months ago by gmchaput • 10
2
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1
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210
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1
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Wheter adapter and other technical sequences can occur in any location within reads ?
genome trimmomatic fastq alignment sequencing written 7 months ago by demolidd77 • 40 • updated 5 months ago by Biostar ♦♦ 20
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296
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Trimmomatic; How to get only q20 < q < q30 reads
trimmomatic reads fastq ngs written 6 months ago by SSK • 10
2
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2
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2.8k
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2
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Trimmomatic: How to improve FastQC report by adjusting the thresholds in running Trimmomatic?
trimmomatic rna-seq fastqc written 3.7 years ago by tunl • 60 • updated 6 months ago by genetician2016 • 10
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1
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What is a good Trimmomatic parameter?
trimmomatic ngs rna-seq sequencing written 23 months ago by Arindam Ghosh • 200 • updated 6 months ago by genetician2016 • 10
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308
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First script trimmomatic
trimmomatic written 8 months ago by milord94 • 0 • updated 7 months ago by Biostar ♦♦ 20
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2
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456
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2
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Trimmomatic is removing excessive reads after trimmimg
trimmomatic quality rna-seq written 7 months ago by sneha108ss • 10
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0
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283
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Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 8 months ago by reza • 220
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389
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0
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Understanding trimmomatic adapter files and trimming
trimmomatic rna-seq written 10 months ago by Ml6237 • 0 • updated 8 months ago by Biostar ♦♦ 20
4
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0
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372
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Running Trimmomatic for bulk RNAseq data
trimmomatic rna-seq fastqc written 9 months ago by F. Golestan • 50
6
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2
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316
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2
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Forum: Is trimming always better?
trimmomatic trimming qc forum rna-seq written 9 months ago by Mozart • 140 • updated 9 months ago by genomax ♦ 80k
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1
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Tool: Shell script to automate trimmomatic for multiple samples
trimmomatic tool shell bash written 11 months ago by lakhujanivijay ♦ 4.8k
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561
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MarkDuplicates: Mates are missing
trimmomatic picardtools samtools rna-seq hisat2 written 11 months ago by swarajgaikwad15 • 0
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4
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500
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8 follow
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General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 11 months ago by Mozart • 140 • updated 11 months ago by swbarnes2 ♦ 7.5k
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How to align Trimmomatic unpaired reads with BWA?
trimmomatic unpaired reads bwa written 4.9 years ago by mcff23 • 60 • updated 12 months ago by drake.edwards • 0
5
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1
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1.4k
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What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 13 months ago by Gary • 480 • updated 13 months ago by h.mon ♦ 29k
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660
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Trimmomatic Error : java.lang.ArrayIndexOutOfBoundsException: 1
trimmomatic qc written 13 months ago by bwee • 0
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1
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Suggestions for Trimmomatic and "illuminaclip" parameter
trimmomatic trimming illuminaclip rna-seq written 13 months ago by Batu • 170 • updated 13 months ago by caggtaagtat • 950
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Hisat2 after the use of trimmomatic software: (ERR): hisat2-align exited with value 134
trimmomatic new tuxedo protocol rna-seq hisat2 written 14 months ago by swarajgaikwad15 • 0 • updated 14 months ago by ATpoint ♦ 32k
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396
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Trinity reads are not identical-
trimmomatic trinity rna-seq error assembly written 14 months ago by sneha.preha7 • 0
5
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910
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Trimmomatic "no such file or directory" error with reverse input
trimmomatic trimming written 15 months ago by emilyc • 10 • updated 15 months ago by finswimmer ♦ 13k
0
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0
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378
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Problem in Sequence Length Distribution
trimmomatic quality sequence lenght fastqc written 15 months ago by vitorgomesbio • 0
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