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Trimmomatic Error (Exception in thread "main" java)
trimmomatic next-gen written 2 days ago by sohinibanerjee.rs • 0 • updated 2 days ago by genomax ♦ 75k
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1
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59
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Unknown trimmer, single end, i tried other solutions but not soved.
software error trimmomatic written 2 days ago by adrieltanillorosa • 0 • updated 2 days ago by zx8754 ♦ 8.8k
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221
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3' Tag-Seq / DE Analysis - FASTQC detects overrepresented sequences as well as fails per base & GC sequence content
trimmomatic tag-seq sortmerna rna-seq fastqc written 7 weeks ago by gmchaput • 10
2
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1
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164
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1
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Wheter adapter and other technical sequences can occur in any location within reads ?
genome trimmomatic fastq alignment sequencing written 3 months ago by demolidd77 • 40 • updated 8 weeks ago by Biostar ♦♦ 20
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Trimmomatic; How to get only q20 < q < q30 reads
trimmomatic reads fastq ngs written 9 weeks ago by SSK • 10
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Trimmomatic: How to improve FastQC report by adjusting the thresholds in running Trimmomatic?
trimmomatic rna-seq fastqc written 3.4 years ago by tunl • 60 • updated 12 weeks ago by genetician2016 • 10
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2.8k
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What is a good Trimmomatic parameter?
trimmomatic ngs rna-seq sequencing written 19 months ago by Arindam Ghosh • 200 • updated 12 weeks ago by genetician2016 • 10
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193
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First script trimmomatic
trimmomatic written 4 months ago by milord94 • 0 • updated 3 months ago by Biostar ♦♦ 20
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2
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290
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Trimmomatic is removing excessive reads after trimmimg
trimmomatic quality rna-seq written 4 months ago by sneha108ss • 10
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221
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Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 4 months ago by reza • 210
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Understanding trimmomatic adapter files and trimming
trimmomatic rna-seq written 6 months ago by Ml6237 • 0 • updated 4 months ago by Biostar ♦♦ 20
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Running Trimmomatic for bulk RNAseq data
trimmomatic rna-seq fastqc written 5 months ago by F. Golestan • 40
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5 follow
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LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 18 months ago by grant.hovhannisyan • 1.8k • updated 5 months ago by mfawzy.sami • 0
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273
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Forum: Is trimming always better?
trimmomatic trimming qc forum rna-seq written 5 months ago by Mozart • 140 • updated 5 months ago by genomax ♦ 75k
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Tool: Shell script to automate trimmomatic for multiple samples
trimmomatic tool shell bash written 7 months ago by lakhujanivijay ♦ 4.7k
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MarkDuplicates: Mates are missing
trimmomatic picardtools samtools rna-seq hisat2 written 7 months ago by swarajgaikwad15 • 0
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8 follow
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General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 8 months ago by Mozart • 140 • updated 7 months ago by swbarnes2 ♦ 7.0k
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How to align Trimmomatic unpaired reads with BWA?
trimmomatic unpaired reads bwa written 4.6 years ago by mcff23 • 60 • updated 8 months ago by drake.edwards • 0
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What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 9 months ago by Gary • 470 • updated 9 months ago by h.mon ♦ 28k
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Trimmomatic Error : java.lang.ArrayIndexOutOfBoundsException: 1
trimmomatic qc written 9 months ago by bwee • 0
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1
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Suggestions for Trimmomatic and "illuminaclip" parameter
trimmomatic trimming illuminaclip rna-seq written 9 months ago by Batu • 170 • updated 9 months ago by caggtaagtat • 900
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Hisat2 after the use of trimmomatic software: (ERR): hisat2-align exited with value 134
trimmomatic new tuxedo protocol rna-seq hisat2 written 10 months ago by swarajgaikwad15 • 0 • updated 10 months ago by ATpoint ♦ 26k
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Trinity reads are not identical-
trimmomatic trinity rna-seq error assembly written 10 months ago by sneha.preha7 • 0
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671
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Trimmomatic "no such file or directory" error with reverse input
trimmomatic trimming written 11 months ago by emilyc • 10 • updated 11 months ago by finswimmer ♦ 13k
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323
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Problem in Sequence Length Distribution
trimmomatic quality sequence lenght fastqc written 11 months ago by vitorgomesbio • 0
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Trimmomatic not trimming the adapter
trimmomatic small rna written 13 months ago by S • 90 • updated 12 months ago by Biostar ♦♦ 20
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310
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Trimmomatic confirmation, multiple indeces per sample?!
trimmomatic rnaseq trimming written 12 months ago by T_18 • 40 • updated 12 months ago by finswimmer ♦ 13k
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How to save trimmomatic terminal summary to an output file?
trimmomatic written 12 months ago by DNAngel • 40
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5 follow
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Low percentage of Illumina reads retained after trimming with Trimmomatic
genome trimmomatic sequencing written 12 months ago by Bea • 0 • updated 12 months ago by ATpoint ♦ 26k
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the lower unique mapping rate after Trimming
trimmomatic star rna-seq written 12 months ago by lilingjoyo • 30
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