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Trimmomatic couldn't generate output file
software error trimmomatic written 23 days ago by leukippus0116 • 0 • updated 3 hours ago by swbarnes2 ♦ 9.3k
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Alignment in WES
trimmomatic exome wes alignment sequencing written 8 weeks ago by kanika.151 • 80 • updated 24 days ago by Biostar ♦♦ 20
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Which adapters to use for trimming?
adapters trimmomatic trimming written 25 days ago by Ash • 10
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2
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2
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Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
trimmomatic ngs fastqc written 4 weeks ago by cg1440 • 20 • updated 4 weeks ago by Carlo Yague ♦ 5.5k
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155
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assembly without trimming vs with trimming
trimmomatic assembly busco trinity written 9 weeks ago by tiagobellintani • 0 • updated 9 weeks ago by b.schiffthaler • 20
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Trimmomatic installation makefile error
trimmomatic makefile written 12 weeks ago by robbenstijn • 0 • updated 12 weeks ago by Pierre Lindenbaum ♦ 132k
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Is it normal that Trimmomatic is trimming DNA seq 2 days?
trimmomatic dna written 3 months ago by mailard • 0
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158
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Trimmomatic trims most of the reverse strand
trimmomatic fastq trim bwa written 3 months ago by hkarakurt • 100 • updated 3 months ago by GenoMax ♦ 94k
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250
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Exception in thread "main" java.lang.RuntimeException: Unknown trimmer
trimmomatic written 3 months ago by mailard • 0
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298
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5 follow
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comparing softwares for trimming adaptors
adaptors trimmomatic trimming cutadapt written 3 months ago by gubrins • 60
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Trimmomatic on NEBNext Ultra II FS DNA
trimmomatic adapters next-gen sequencing written 5 months ago by plicht • 0
3
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1
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271
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1
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problem with trimmomatic
gene trimmomatic rna-seq written 5 months ago by mo.ghasemi717 • 10 • updated 5 months ago by Lesley Sitter • 540
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High rate of "Aligned concordantly >1 times:"
trimmomatic hisat2 written 6 months ago by j.m.fustin27 • 0
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300
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Why the Trimmomatic does not remove some adapters? How do I add a new sequence to be removed?
trimmomatic trimming illumina adapters written 7 months ago by belenescobari • 0
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200
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De Novo Assembly
de novo assembly trimmomatic rna-seq assembly written 7 months ago by slushverte01 • 0 • updated 7 months ago by JC ♦ 12k
1
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1
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Filter fastq files
trimmomatic fastq written 9 months ago by DataFanatic • 290 • updated 8 months ago by Istvan Albert ♦♦ 86k
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8 follow
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Forum: Is trimming always better?
trimmomatic trimming qc forum rna-seq written 18 months ago by Mozart • 240 • updated 9 months ago by swbarnes2 ♦ 9.3k
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230
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over-represented is not removed after trimmomatic
trimmomatic fastqc written 9 months ago by DataFanatic • 290
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249
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Trimmomatic Kseq and Bowtie --dovetail
trimmomatic chip-seq written 9 months ago by KT • 0 • updated 9 months ago by GenoMax ♦ 94k
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LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 2.6 years ago by grant.hovhannisyan • 2.0k • updated 9 months ago by leonardo.araque • 0
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273
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error en trimmomatic
trimmomatic error written 9 months ago by laurapeaz_21315 • 0
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removing overrepresented sequences from rna-seq
trimmomatic overrepresented sequences cutadapt written 10 months ago by anna • 10 • updated 10 months ago by h.mon ♦ 32k
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Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic trinity assembly transcriptome written 10 months ago by Light92 • 50
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237
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Trimmomatic : Why is output different? ; filtering with row -> q20 -> q30 vs row -> q30
trimmomatic fastq written 11 months ago by SSK • 10
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308
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1
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How to process data from Illumina sequencing ?
genome trimmomatic data illumina sequencing written 12 months ago by vicslab • 0 • updated 12 months ago by Michael Dondrup ♦ 48k
2
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Trimmomatic Error (Exception in thread "main" java)
trimmomatic next-gen written 13 months ago by sohinibanerjee.rs • 0 • updated 13 months ago by GenoMax ♦ 94k
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Unknown trimmer, single end, i tried other solutions but not soved.
software error trimmomatic written 13 months ago by Adriel Rosa • 0 • updated 13 months ago by zx8754 ♦ 9.9k
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3' Tag-Seq / DE Analysis - FASTQC detects overrepresented sequences as well as fails per base & GC sequence content
trimmomatic tag-seq sortmerna rna-seq fastqc written 15 months ago by gmchaput • 10
2
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324
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Wheter adapter and other technical sequences can occur in any location within reads ?
genome trimmomatic fastq alignment sequencing written 16 months ago by demolidd77 • 40 • updated 15 months ago by Biostar ♦♦ 20
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Trimmomatic; How to get only q20 < q < q30 reads
trimmomatic reads fastq ngs written 15 months ago by SSK • 10
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