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<prev • 97 results • page 1 of 4 • next >
7
votes
1
answer
272
views
1
answer
Tool: Shell script to automate trimmomatic for multiple samples
trimmomatic tool shell bash written 5 weeks ago by Vijay Lakhujani ♦ 4.1k
0
votes
0
answers
96
views
0
answers
Understanding trimmomatic adapter files and trimming
trimmomatic rna-seq written 26 days ago by Ml6237 • 0
0
votes
0
answers
123
views
0
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MarkDuplicates: Mates are missing
trimmomatic picardtools samtools rna-seq hisat2 written 4 weeks ago by swarajgaikwad15 • 0
7
votes
4
answers
266
views
8 follow
4
answers
General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 8 weeks ago by Mozart • 130 • updated 6 weeks ago by swbarnes2 ♦ 5.8k
9
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2
answers
4.9k
views
2
answers
How to align Trimmomatic unpaired reads with BWA?
trimmomatic unpaired reads bwa written 4.1 years ago by mcff23 • 60 • updated 11 weeks ago by drake.edwards • 0
5
votes
1
answer
402
views
1
answer
What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 3 months ago by Gary • 450 • updated 3 months ago by h.mon ♦ 25k
1
vote
1
answer
224
views
1
answer
Trimmomatic Error : java.lang.ArrayIndexOutOfBoundsException: 1
trimmomatic qc written 3 months ago by bwee • 0
5
votes
1
answer
395
views
1
answer
Suggestions for Trimmomatic and "illuminaclip" parameter
trimmomatic trimming illuminaclip rna-seq written 3 months ago by Batu • 150 • updated 3 months ago by caggtaagtat • 620
0
votes
1
answer
440
views
1
answer
Hisat2 after the use of trimmomatic software: (ERR): hisat2-align exited with value 134
trimmomatic new tuxedo protocol rna-seq hisat2 written 4 months ago by swarajgaikwad15 • 0 • updated 4 months ago by ATpoint ♦ 17k
0
votes
0
answers
216
views
0
answers
Trinity reads are not identical-
trimmomatic trinity rna-seq error assembly written 4 months ago by sneha.preha7 • 0
5
votes
1
answer
352
views
1
answer
Trimmomatic "no such file or directory" error with reverse input
trimmomatic trimming written 5 months ago by emilyc • 0 • updated 5 months ago by finswimmer ♦ 11k
0
votes
0
answers
208
views
0
answers
Problem in Sequence Length Distribution
trimmomatic quality sequence lenght fastqc written 5 months ago by vitorgomesbio • 0
2
votes
0
answers
387
views
0
answers
Trimmomatic not trimming the adapter
trimmomatic small rna written 7 months ago by S • 90 • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
188
views
0
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Trimmomatic confirmation, multiple indeces per sample?!
trimmomatic rnaseq trimming written 6 months ago by T_18 • 40 • updated 6 months ago by finswimmer ♦ 11k
7
votes
2
answers
346
views
2
answers
How to save trimmomatic terminal summary to an output file?
trimmomatic written 6 months ago by DNAngel • 30
2
votes
0
answers
467
views
5 follow
0
answers
Low percentage of Illumina reads retained after trimming with Trimmomatic
genome trimmomatic sequencing written 6 months ago by Bea • 0 • updated 6 months ago by ATpoint ♦ 17k
1
vote
0
answers
329
views
0
answers
the lower unique mapping rate after Trimming
trimmomatic star rna-seq written 6 months ago by lilingjoyo • 30
0
votes
0
answers
187
views
0
answers
Cannot Generate Trimmomatic Output Files
trimmomatic rna-seq written 6 months ago by matthew.sinton • 0 • updated 6 months ago by finswimmer ♦ 11k
0
votes
1
answer
363
views
1
answer
Trimmomatic Unknown Trimmer Error for Output File
trimmomatic rna-seq written 7 months ago by calvin.davey • 10
0
votes
1
answer
195
views
1
answer
Threshold Quality Default Number
trimmomatic leading quality control threshold written 7 months ago by vitorgomesbio • 0 • updated 7 months ago by finswimmer ♦ 11k
1
vote
2
answers
3.5k
views
5 follow
2
answers
Unable to access jarfile trimmomatic-0.35
trimmomatic paired end reads rna-seq written 21 months ago by Ambika • 20 • updated 8 months ago by kristina.mahan • 30
2
votes
2
answers
412
views
2
answers
Trimmomatic execution removes the data from my fastq sequence file. What am I doing wrong?
trimmomatic written 8 months ago by kristina.mahan • 30
2
votes
0
answers
741
views
0
answers
Error: Help understand Trimmomatic ZLIB input stream error
trimmomatic written 9 months ago by James Reeve • 80
1
vote
1
answer
814
views
5 follow
1
answer
Trimmomatic only for removing adapters
trimmomatic rna-seq written 11 months ago by grant.hovhannisyan • 1.5k • updated 9 months ago by jenn.drummond • 60
9
votes
1
answer
621
views
6 follow
1
answer
How to process paired end data (using fastq-dump) to get Fw and Rv files
trimmomatic fastq sra toolkit rna-seq written 12 months ago by 2405592M • 30
4
votes
2
answers
842
views
2
answers
Using Trimommatic to only clip adapters on multiple fastq files.
trimmomatic rna-seq written 10 months ago by imesi • 20 • updated 10 months ago by Vijay Lakhujani ♦ 4.1k
2
votes
1
answer
439
views
1
answer
How do you decide the minimum length for the adapter that needs trimming for small RNAseq
trimmomatic trimming smallrnaseq adapter written 11 months ago by MAPK • 1.4k
0
votes
0
answers
574
views
0
answers
miRNA-seq Trimmomatic adapter file
trimmomatic adapter mirna-seq written 11 months ago by inah • 20 • updated 11 months ago by WouterDeCoster ♦ 39k
2
votes
3
answers
712
views
6 follow
3
answers
Trim Paired-end Fastq Files
trimmomatic paired-end rna-seq written 11 months ago by yuabrahamliu • 40 • updated 11 months ago by h.mon ♦ 25k
3
votes
2
answers
559
views
2
answers
How to determine which adapter to use while trimming?
trimmomatic ngs fastq adapter written 11 months ago by MAPK • 1.4k • updated 11 months ago by sschmeier • 80
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