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2
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64
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Trimmomatic execution removes the data from my fastq sequence file. What am I doing wrong?
trimmomatic written 3 days ago by kristina.mahan • 0
2
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0
answers
235
views
0
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Error: Help understand Trimmomatic ZLIB input stream error
trimmomatic written 23 days ago by James Reeve • 30
1
vote
1
answer
213
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5 follow
1
answer
Trimmomatic only for removing adapters
trimmomatic rna-seq written 12 weeks ago by grant.hovhannisyan • 1.1k • updated 23 days ago by jenn.drummond • 40
9
votes
1
answer
298
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6 follow
1
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How to process paired end data (using fastq-dump) to get Fw and Rv files
trimmomatic fastq sra toolkit rna-seq written 3 months ago by 2405592M • 10
4
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2
answers
328
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2
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Using Trimommatic to only clip adapters on multiple fastq files.
trimmomatic rna-seq written 7 weeks ago by imesi • 20 • updated 7 weeks ago by Vijay Lakhujani ♦ 3.0k
2
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1
answer
162
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1
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How do you decide the minimum length for the adapter that needs trimming for small RNAseq
trimmomatic trimming smallrnaseq adapter written 9 weeks ago by MAPK • 1.3k
0
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0
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176
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0
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miRNA-seq Trimmomatic adapter file
trimmomatic adapter mirna-seq written 9 weeks ago by inah • 10 • updated 9 weeks ago by WouterDeCoster ♦ 32k
3
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3
answers
252
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6 follow
3
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Trim Paired-end Fastq Files
trimmomatic paired-end rna-seq written 9 weeks ago by yuabrahamliu • 30 • updated 9 weeks ago by h.mon ♦ 19k
3
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2
answers
223
views
2
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How to determine which adapter to use while trimming?
trimmomatic ngs fastq adapter written 10 weeks ago by MAPK • 1.3k • updated 10 weeks ago by sschmeier • 80
4
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1
answer
279
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1
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Interpretation of Trimmomatic Results after Paired-End Adapter Trimming
trimmomatic adapter trimming rna-seq written 11 weeks ago by sevenless • 0 • updated 11 weeks ago by mastal511 • 2.0k
1
vote
1
answer
258
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1
answer
Trimmomatic adapter clipping removes many reads even if "keepBothReads" parameter is selected
trimmomatic illumina adapter trimming pair-end written 3 months ago by al-ash • 50 • updated 11 weeks ago by finswimmer ♦ 5.4k
1
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0
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208
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0
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Leftover adapter sequences after Trimmomatic trimming?
trimmomatic adapters trimming rna-seq written 11 weeks ago by annsun89 • 10 • updated 11 weeks ago by genomax ♦ 55k
0
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0
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215
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0
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kmer content changes after trimming and removing adapters from reads
trimmomatic dnaseq fastqc written 11 weeks ago by serpalma.v • 10
6
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0
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394
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0
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Which truseq trimmomatic adapters file to use when removing truseq adapters?
adapters trimmomatic rna-seq written 12 weeks ago by salamandra • 170
4
votes
1
answer
264
views
1
answer
What is Trimmomatic -validatePairs, and how to use it?
trimmomatic written 3 months ago by jon.brate • 190 • updated 3 months ago by h.mon ♦ 19k
3
votes
2
answers
355
views
2
answers
LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 3 months ago by grant.hovhannisyan • 1.1k • updated 3 months ago by YaGalbi • 1.3k
2
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0
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170
views
0
answers
Trimmomatic Error and Permission Denied
trimmomatic permission denied error linux written 4 months ago by boydmm6 • 0
3
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0
answers
398
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0
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What is a good Trimmomatic parameter?
trimmomatic ngs rna-seq sequencing written 4 months ago by ag1805x • 90
15
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0
answers
323
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6 follow
0
answers
trimmomaric command for a fasta file?
trimmomatic written 4 months ago by Nadin.asal • 0 • updated 4 months ago by RamRS ♦ 17k
1
vote
0
answers
325
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0
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Trimmomatic error "Exception processing reads"
trimmomatic written 8 months ago by Lucila • 10 • updated 5 months ago by Biostar ♦♦ 20
6
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2
answers
382
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2
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How to read a loop over to read a file in a folder for many folders
trimmomatic filtering multiple files written 6 months ago by tcf.hcdg • 60 • updated 6 months ago by shenwei356 ♦ 4.1k
3
votes
1
answer
564
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1
answer
Trimmomatic output: how to include unpaired reads in the assembly?
trimmomatic trimming megahit assembling written 6 months ago by dark.lord • 0
3
votes
1
answer
253
views
1
answer
Trimmomatic destroys right-hand paired-end sequences, how to avoid?
trimmomatic qc written 7 months ago by dec986 • 110 • updated 7 months ago by Martombo • 2.2k
5
votes
1
answer
271
views
1
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Cannot match machine name with Machine Type
trimmomatic fastq qc rna-seq written 8 months ago by dec986 • 110 • updated 8 months ago by Devon Ryan ♦ 84k
2
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1
answer
842
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1
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How to remove Poly-A tails from from QuantSeq 3' FWD data using Trimmomatic
trimmomatic poly-a tails quantseq written 9 months ago by jerrywu1987 • 0
0
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1
answer
517
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1
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Minimum read length in Trimmomatic
trimmomatic rna-seq written 9 months ago by matiqau • 0 • updated 9 months ago by chen • 1.7k
1
vote
1
answer
644
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1
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trimming RNA-seq reads with adapter sequence?index? using trimmomatic
trimmomatic adapter rna-seq trim written 9 months ago by woongjaej • 10 • updated 9 months ago by Jake Warner • 670
1
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1
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1.0k
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1
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Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic paired-end written 9 months ago by dllopezr • 20 • updated 9 months ago by Carlo Yague • 4.2k
4
votes
1
answer
666
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1
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Trimmomatic not displaying summary
trimmomatic rna-seq written 10 months ago by kiddodoraemon • 10 • updated 10 months ago by Kevin Blighe ♦ 28k
1
vote
1
answer
818
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1
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Interpretation of Results from trimmomatic
trimmomatic result rna-seq written 12 months ago by Ambika • 20 • updated 12 months ago by finswimmer ♦ 5.4k
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