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3
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1
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73
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problem with trimmomatic
gene trimmomatic rna-seq written 1 day ago by mo.ghasemi717 • 0 • updated 10 hours ago by Lesley Sitter • 520
3
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2
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107
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2
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High rate of "Aligned concordantly >1 times:"
trimmomatic hisat2 written 17 days ago by j.m.fustin27 • 0
0
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0
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110
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0
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Why the Trimmomatic does not remove some adapters? How do I add a new sequence to be removed?
trimmomatic trimming illumina adapters written 8 weeks ago by belenescobari • 0
0
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1
answer
123
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1
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De Novo Assembly
de novo assembly trimmomatic rna-seq assembly written 8 weeks ago by slushverte01 • 0 • updated 8 weeks ago by JC ♦ 11k
1
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1
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191
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1
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Filter fastq files
trimmomatic fastq written 3 months ago by DataFanatic • 240 • updated 3 months ago by Istvan Albert ♦♦ 84k
10
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3
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443
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8 follow
3
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Forum: Is trimming always better?
trimmomatic trimming qc forum rna-seq written 13 months ago by Mozart • 200 • updated 3 months ago by swbarnes2 ♦ 8.1k
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0
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135
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0
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over-represented is not removed after trimmomatic
trimmomatic fastqc written 3 months ago by DataFanatic • 240
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0
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123
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0
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Trimmomatic Kseq and Bowtie --dovetail
trimmomatic chip-seq written 3 months ago by KT • 0 • updated 3 months ago by genomax ♦ 87k
5
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3
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7 follow
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LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 2.2 years ago by grant.hovhannisyan • 2.0k • updated 4 months ago by leonardo.araque • 0
0
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0
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185
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error en trimmomatic
trimmomatic error written 4 months ago by laurapeaz_21315 • 0
7
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1
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394
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1
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removing overrepresented sequences from rna-seq
trimmomatic overrepresented sequences cutadapt written 5 months ago by anna • 10 • updated 5 months ago by h.mon ♦ 30k
3
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0
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179
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0
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Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic trinity assembly transcriptome written 5 months ago by Light92 • 20
0
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0
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152
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0
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Trimmomatic : Why is output different? ; filtering with row -> q20 -> q30 vs row -> q30
trimmomatic fastq written 5 months ago by SSK • 10
3
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1
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247
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1
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How to process data from Illumina sequencing ?
genome trimmomatic data illumina sequencing written 6 months ago by vicslab • 0 • updated 6 months ago by Michael Dondrup ♦ 47k
2
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1
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291
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1
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Trimmomatic Error (Exception in thread "main" java)
trimmomatic next-gen written 7 months ago by sohinibanerjee.rs • 0 • updated 7 months ago by genomax ♦ 87k
1
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1
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236
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1
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Unknown trimmer, single end, i tried other solutions but not soved.
software error trimmomatic written 7 months ago by Adriel Rosa • 0 • updated 7 months ago by zx8754 ♦ 9.4k
2
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0
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722
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0
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3' Tag-Seq / DE Analysis - FASTQC detects overrepresented sequences as well as fails per base & GC sequence content
trimmomatic tag-seq sortmerna rna-seq fastqc written 9 months ago by gmchaput • 10
2
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1
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257
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1
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Wheter adapter and other technical sequences can occur in any location within reads ?
genome trimmomatic fastq alignment sequencing written 11 months ago by demolidd77 • 40 • updated 9 months ago by Biostar ♦♦ 20
0
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0
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495
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0
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Trimmomatic; How to get only q20 < q < q30 reads
trimmomatic reads fastq ngs written 9 months ago by SSK • 10
2
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2
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3.1k
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2
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Trimmomatic: How to improve FastQC report by adjusting the thresholds in running Trimmomatic?
trimmomatic rna-seq fastqc written 4.0 years ago by tunl • 60 • updated 10 months ago by genetician2016 • 10
7
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1
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4.1k
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1
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What is a good Trimmomatic parameter?
trimmomatic ngs rna-seq sequencing written 2.2 years ago by Arindam Ghosh • 300 • updated 10 months ago by genetician2016 • 10
0
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0
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410
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0
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First script trimmomatic
trimmomatic written 12 months ago by milord94 • 0 • updated 11 months ago by Biostar ♦♦ 20
0
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2
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667
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2
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Trimmomatic is removing excessive reads after trimmimg
trimmomatic quality rna-seq written 11 months ago by sneha108ss • 10
0
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0
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358
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0
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Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 12 months ago by reza • 230
0
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0
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495
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0
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Understanding trimmomatic adapter files and trimming
trimmomatic rna-seq written 14 months ago by Ml6237 • 0 • updated 12 months ago by Biostar ♦♦ 20
4
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0
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455
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0
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Running Trimmomatic for bulk RNAseq data
trimmomatic rna-seq fastqc written 13 months ago by F. Golestan • 60
9
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1
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1.7k
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1
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Tool: Shell script to automate trimmomatic for multiple samples
trimmomatic tool shell bash written 15 months ago by lakhujanivijay ♦ 5.1k
0
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0
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724
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0
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MarkDuplicates: Mates are missing
trimmomatic picardtools samtools rna-seq hisat2 written 14 months ago by swarajgaikwad15 • 20
7
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4
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611
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8 follow
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General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 15 months ago by Mozart • 200 • updated 15 months ago by swbarnes2 ♦ 8.1k
10
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2
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2
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How to align Trimmomatic unpaired reads with BWA?
trimmomatic unpaired reads bwa written 5.3 years ago by mcff23 • 60 • updated 16 months ago by drake.edwards • 0
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