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Trimmomatic installation makefile error
trimmomatic makefile written 4 days ago by robbenstijn • 0 • updated 4 days ago by Pierre Lindenbaum ♦ 131k
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95
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Is it normal that Trimmomatic is trimming DNA seq 2 days?
trimmomatic dna written 12 days ago by mailard • 0
1
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1
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71
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1
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Trimmomatic trims most of the reverse strand
trimmomatic fastq trim bwa written 12 days ago by hkarakurt • 100 • updated 12 days ago by genomax ♦ 91k
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2
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95
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Exception in thread "main" java.lang.RuntimeException: Unknown trimmer
trimmomatic written 17 days ago by mailard • 0
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1
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164
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5 follow
1
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comparing softwares for trimming adaptors
adaptors trimmomatic trimming cutadapt written 20 days ago by gabri.mochales • 30
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110
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Trimmomatic on NEBNext Ultra II FS DNA
trimmomatic adapters next-gen sequencing written 10 weeks ago by plicht • 0
3
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1
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190
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1
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problem with trimmomatic
gene trimmomatic rna-seq written 12 weeks ago by mo.ghasemi717 • 10 • updated 11 weeks ago by Lesley Sitter • 540
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2
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241
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High rate of "Aligned concordantly >1 times:"
trimmomatic hisat2 written 3 months ago by j.m.fustin27 • 0
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198
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Why the Trimmomatic does not remove some adapters? How do I add a new sequence to be removed?
trimmomatic trimming illumina adapters written 4 months ago by belenescobari • 0
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1
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160
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De Novo Assembly
de novo assembly trimmomatic rna-seq assembly written 4 months ago by slushverte01 • 0 • updated 4 months ago by JC ♦ 11k
1
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1
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223
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1
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Filter fastq files
trimmomatic fastq written 6 months ago by DataFanatic • 260 • updated 6 months ago by Istvan Albert ♦♦ 85k
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3
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474
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8 follow
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Forum: Is trimming always better?
trimmomatic trimming qc forum rna-seq written 16 months ago by Mozart • 240 • updated 6 months ago by swbarnes2 ♦ 8.9k
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188
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over-represented is not removed after trimmomatic
trimmomatic fastqc written 6 months ago by DataFanatic • 260
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188
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Trimmomatic Kseq and Bowtie --dovetail
trimmomatic chip-seq written 6 months ago by KT • 0 • updated 6 months ago by genomax ♦ 91k
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LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 2.4 years ago by grant.hovhannisyan • 2.0k • updated 6 months ago by leonardo.araque • 0
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215
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error en trimmomatic
trimmomatic error written 7 months ago by laurapeaz_21315 • 0
7
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1
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612
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1
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removing overrepresented sequences from rna-seq
trimmomatic overrepresented sequences cutadapt written 7 months ago by anna • 10 • updated 7 months ago by h.mon ♦ 31k
3
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262
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Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic trinity assembly transcriptome written 8 months ago by Light92 • 20
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192
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Trimmomatic : Why is output different? ; filtering with row -> q20 -> q30 vs row -> q30
trimmomatic fastq written 8 months ago by SSK • 10
3
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1
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282
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1
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How to process data from Illumina sequencing ?
genome trimmomatic data illumina sequencing written 9 months ago by vicslab • 0 • updated 9 months ago by Michael Dondrup ♦ 47k
2
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1
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364
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1
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Trimmomatic Error (Exception in thread "main" java)
trimmomatic next-gen written 10 months ago by sohinibanerjee.rs • 0 • updated 10 months ago by genomax ♦ 91k
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Unknown trimmer, single end, i tried other solutions but not soved.
software error trimmomatic written 10 months ago by Adriel Rosa • 0 • updated 10 months ago by zx8754 ♦ 9.7k
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3' Tag-Seq / DE Analysis - FASTQC detects overrepresented sequences as well as fails per base & GC sequence content
trimmomatic tag-seq sortmerna rna-seq fastqc written 12 months ago by gmchaput • 10
2
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1
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286
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1
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Wheter adapter and other technical sequences can occur in any location within reads ?
genome trimmomatic fastq alignment sequencing written 14 months ago by demolidd77 • 40 • updated 12 months ago by Biostar ♦♦ 20
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Trimmomatic; How to get only q20 < q < q30 reads
trimmomatic reads fastq ngs written 12 months ago by SSK • 10
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Trimmomatic: How to improve FastQC report by adjusting the thresholds in running Trimmomatic?
trimmomatic rna-seq fastqc written 4.3 years ago by tunl • 60 • updated 13 months ago by genetician2016 • 10
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What is a good Trimmomatic parameter?
trimmomatic ngs rna-seq sequencing written 2.4 years ago by Arindam Ghosh • 310 • updated 13 months ago by genetician2016 • 10
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483
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First script trimmomatic
trimmomatic written 15 months ago by milord94 • 0 • updated 13 months ago by Biostar ♦♦ 20
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Trimmomatic is removing excessive reads after trimmimg
trimmomatic quality rna-seq written 14 months ago by sneha108ss • 10
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401
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Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 14 months ago by reza • 230
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