Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: trimmomatic • reset
or   Classic search
<prev • 103 results • page 1 of 4 • next >
2
votes
2
answers
2.4k
views
2
answers
Trimmomatic: How to improve FastQC report by adjusting the thresholds in running Trimmomatic?
trimmomatic rna-seq fastqc written 3.2 years ago by tunl • 60 • updated 4 days ago by genetician2016 • 0
6
votes
0
answers
2.3k
views
0
answers
What is a good Trimmomatic parameter?
trimmomatic ngs rna-seq sequencing written 16 months ago by Arindam Ghosh • 170 • updated 4 days ago by genetician2016 • 0
0
votes
0
answers
138
views
0
answers
First script trimmomatic
trimmomatic written 9 weeks ago by milord94 • 0 • updated 15 days ago by Biostar ♦♦ 20
1
vote
0
answers
94
views
0
answers
Wheter adapter and other technical sequences can occur in any location within reads ?
genome trimmomatic fastq alignment sequencing written 21 days ago by demolidd77 • 40
0
votes
2
answers
187
views
2
answers
Trimmomatic is removing excessive reads after trimmimg
trimmomatic quality rna-seq written 5 weeks ago by sneha108ss • 10
0
votes
0
answers
149
views
0
answers
Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 5 weeks ago by reza • 210
0
votes
0
answers
195
views
0
answers
Understanding trimmomatic adapter files and trimming
trimmomatic rna-seq written 4 months ago by Ml6237 • 0 • updated 7 weeks ago by Biostar ♦♦ 20
4
votes
0
answers
238
views
0
answers
Running Trimmomatic for bulk RNAseq data
trimmomatic rna-seq fastqc written 10 weeks ago by F. Golestan • 20
5
votes
3
answers
1.9k
views
5 follow
3
answers
LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 15 months ago by grant.hovhannisyan • 1.7k • updated 10 weeks ago by mfawzy.sami • 0
6
votes
2
answers
214
views
2
answers
Forum: Is trimming always better?
trimmomatic trimming qc forum rna-seq written 12 weeks ago by Mozart • 140 • updated 12 weeks ago by genomax ♦ 71k
9
votes
1
answer
413
views
1
answer
Tool: Shell script to automate trimmomatic for multiple samples
trimmomatic tool shell bash written 4 months ago by lakhujanivijay ♦ 4.4k
0
votes
0
answers
240
views
0
answers
MarkDuplicates: Mates are missing
trimmomatic picardtools samtools rna-seq hisat2 written 4 months ago by swarajgaikwad15 • 0
7
votes
4
answers
351
views
8 follow
4
answers
General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 5 months ago by Mozart • 140 • updated 4 months ago by swbarnes2 ♦ 6.5k
10
votes
2
answers
5.2k
views
2
answers
How to align Trimmomatic unpaired reads with BWA?
trimmomatic unpaired reads bwa written 4.4 years ago by mcff23 • 60 • updated 5 months ago by drake.edwards • 0
5
votes
1
answer
738
views
1
answer
What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 6 months ago by Gary • 450 • updated 6 months ago by h.mon ♦ 27k
1
vote
1
answer
350
views
1
answer
Trimmomatic Error : java.lang.ArrayIndexOutOfBoundsException: 1
trimmomatic qc written 6 months ago by bwee • 0
7
votes
1
answer
859
views
1
answer
Suggestions for Trimmomatic and "illuminaclip" parameter
trimmomatic trimming illuminaclip rna-seq written 6 months ago by Batu • 170 • updated 6 months ago by caggtaagtat • 760
0
votes
1
answer
665
views
1
answer
Hisat2 after the use of trimmomatic software: (ERR): hisat2-align exited with value 134
trimmomatic new tuxedo protocol rna-seq hisat2 written 7 months ago by swarajgaikwad15 • 0 • updated 7 months ago by ATpoint ♦ 23k
0
votes
0
answers
268
views
0
answers
Trinity reads are not identical-
trimmomatic trinity rna-seq error assembly written 7 months ago by sneha.preha7 • 0
5
votes
1
answer
531
views
1
answer
Trimmomatic "no such file or directory" error with reverse input
trimmomatic trimming written 8 months ago by emilyc • 10 • updated 8 months ago by finswimmer ♦ 12k
0
votes
0
answers
282
views
0
answers
Problem in Sequence Length Distribution
trimmomatic quality sequence lenght fastqc written 8 months ago by vitorgomesbio • 0
2
votes
0
answers
476
views
0
answers
Trimmomatic not trimming the adapter
trimmomatic small rna written 10 months ago by S • 90 • updated 9 months ago by Biostar ♦♦ 20
0
votes
0
answers
263
views
0
answers
Trimmomatic confirmation, multiple indeces per sample?!
trimmomatic rnaseq trimming written 9 months ago by T_18 • 40 • updated 9 months ago by finswimmer ♦ 12k
7
votes
2
answers
475
views
2
answers
How to save trimmomatic terminal summary to an output file?
trimmomatic written 9 months ago by DNAngel • 30
2
votes
0
answers
656
views
5 follow
0
answers
Low percentage of Illumina reads retained after trimming with Trimmomatic
genome trimmomatic sequencing written 9 months ago by Bea • 0 • updated 9 months ago by ATpoint ♦ 23k
1
vote
0
answers
420
views
0
answers
the lower unique mapping rate after Trimming
trimmomatic star rna-seq written 9 months ago by lilingjoyo • 30
0
votes
0
answers
246
views
0
answers
Cannot Generate Trimmomatic Output Files
trimmomatic rna-seq written 10 months ago by matthew.sinton • 0 • updated 10 months ago by finswimmer ♦ 12k
0
votes
1
answer
475
views
1
answer
Trimmomatic Unknown Trimmer Error for Output File
trimmomatic rna-seq written 10 months ago by Nottuh • 10
0
votes
1
answer
242
views
1
answer
Threshold Quality Default Number
trimmomatic leading quality control threshold written 11 months ago by vitorgomesbio • 0 • updated 11 months ago by finswimmer ♦ 12k
1
vote
2
answers
4.0k
views
5 follow
2
answers
Unable to access jarfile trimmomatic-0.35
trimmomatic paired end reads rna-seq written 2.0 years ago by Ambika • 30 • updated 11 months ago by kristina.mahan • 50
<prev • 103 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • United States, 1 minute ago
  • EMBL Heidelberg, Germany, 3 minutes ago
  • Malaysia, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1753 users visited in the last hour