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<prev • 44 results • page 1 of 2 • next >
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k-mer overrepresentation of WGS Illumina reads
k-mer trimmomatic adapter trimming fastqc written 11 days ago by Anand Rao • 70
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148
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What could be the best explanation for a dip in phred quality score at the near beginning of reads?
trimmomatic illumina quality phred fastqc written 9 weeks ago by Vijay Lakhujani • 1.1k
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running trimmomatic inside Trinity
trimmomatic trinity tool rnaseq assembly written 16 months ago by lay_0 • 30 • updated 11 weeks ago by Biostar ♦♦ 20
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135
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Trimmomatic trimming principle
trimmomatic read trimming written 3 months ago by shuchen • 10
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223
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rnaseq sequence analysis and trimming
trimmomatic fastqc rna-seq cutadapt written 3 months ago by mail4malla • 0 • updated 3 months ago by WouterDeCoster ♦ 20k
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228
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How to remove adaptors if you don't know their names/sequences? (eg from public data)
adaptors trimmomatic ngs trimming cutadapt written 4 months ago by rioualen • 170 • updated 4 months ago by vchris_ngs • 3.7k
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227
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Do I need to download any specific adapters for Illumina small RNA sequencing kit?
adapter trimming trimmomatic small rna cutadapt written 5 months ago by bioinforesearchquestions • 80
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284
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Trimmomatic -> STAR
trimmomatic star rna-seq written 5 months ago by xd_d • 60
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305
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7 follow
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What is the limiting factor for trimmomatic speed and how can it be increased?
trimmomatic fastq written 5 months ago by Daniel • 3.4k
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405
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Help with Trimmomatic 0.36 Error
trimmomatic adapter sequencing written 5 months ago by jrh154 • 0
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3
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259
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5 follow
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How samplelist.txt may look like for parallel
trimmomatic written 6 months ago by biotech • 500 • updated 6 months ago by shenwei356 • 3.2k
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317
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1
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Custom sequences vs supplied sequences in trimmomatric
adapters trimmomatic trimming written 6 months ago by ofonov • 0 • updated 6 months ago by shunyip • 140
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6 follow
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How does sliding window work in Trimmomatic
trimmomatic illumina written 3.3 years ago by shl198 • 330 • updated 6 months ago by Brian Bushnell ♦ 13k
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Problems with Trimmomatic PE output files
trimmomatic adapter rna-seq fastqc written 7 months ago by hinkel2 • 10 • updated 7 months ago by genomax ♦ 32k
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6 follow
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Trimming TruSeq Universal Adapter (Trimmomatic)
trimmomatic fastq trimming rna-seq written 8 months ago by ZheFrench • 40 • updated 8 months ago by mastal511 • 1.7k
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2
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377
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2
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Improving the coverage of raw fastq data with Trimmomatic CROP option
trimmomatic crop miseq coverage written 8 months ago by Ruf_M • 0
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357
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How to carry out quality control using Trimmomatic on SRA reads of SAGE-RNASeq?
trimmomatic sage qc rna-seq fastqc written 8 months ago by hasche89 • 0
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342
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Non-overlapping Illumnia Runs
trimmomatic illumina next-gen sequence written 9 months ago by branch.lizard • 0
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1
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443
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1
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Getting amount of removed reads after Trimmomatic
trimmomatic fastq written 10 months ago by Corps_en_Thym • 0 • updated 10 months ago by Chris Fields • 1.7k
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403
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1
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Analysing circulatory small non coding RNA
trimmomatic small non coding rna written 10 months ago by HK • 20
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3
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558
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3
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unpaired R1 and R2 sequences
trimmomatic trimming pair-end written 11 months ago by kamiljaron • 70 • updated 11 months ago by Brian Bushnell ♦ 13k
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2
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752
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Unequal paired-end fastq size after quality control
trimmomatic fastq rna-seq written 11 months ago by Whoknows • 580 • updated 11 months ago by mastal511 • 1.7k
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314
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Read fragments to trim
trimmomatic next-gen mirna-seq rna-seq cutadapt written 12 months ago by v82masae • 20
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Trimmomatic: How to improve FastQC report by adjusting the thresholds in running Trimmomatic?
trimmomatic rna-seq fastqc written 12 months ago by tungl • 40 • updated 12 months ago by genomax ♦ 32k
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Trimmomatic: Does it matter to trim the fastq before or after merging multiple replicates?
trimmomatic rna-seq written 12 months ago by tungl • 40 • updated 12 months ago by WouterDeCoster ♦ 20k
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read trimming for small RNA NGS data
trimmomatic read trimming rna-seq mirna written 13 months ago by ron128 • 0
3
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Minimum length of reads after trimming for Assembly
trimmomatic assembly sequencing qc fastqc written 13 months ago by Ric • 130
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Want to trim off last 50 bases from 151 bases read using trimmomatic?
trimmomatic dnaseq fastq rnaseq written 14 months ago by bioinforesearchquestions • 80 • updated 14 months ago by igor • 4.4k
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Trimming of 16S reads
trimmomatic sra trimming metagenome 16s written 15 months ago by agata88 • 610
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Understanding Trimmomatic Sliding Window Approach
trimmomatic quality control qc rna-seq written 15 months ago by nikelle.petrillo • 70 • updated 15 months ago by biomaster • 170
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