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4
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What is Trimmomatic -validatePairs, and how to use it?
trimmomatic written 11 days ago by jon.brate • 150 • updated 10 days ago by h.mon ♦ 15k
8
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1
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125
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5 follow
1
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How to process paired end data (using fastq-dump) to get Fw and Rv files
trimmomatic fastq sra toolkit rna-seq written 11 days ago by 2405592M • 0 • updated 11 days ago by Devon Ryan ♦ 81k
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0
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79
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Trimmomatic adapter clipping removes many reads even if "keepBothReads" parameter is selected
trimmomatic illumina adapter trimming pair-end written 18 days ago by al-ash • 30
3
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2
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125
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2
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LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 24 days ago by grant.hovhannisyan • 880 • updated 24 days ago by YaGalbi • 1.3k
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91
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Trimmomatic Error and Permission Denied
trimmomatic permission denied error linux written 5 weeks ago by boydmm6 • 0
3
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133
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What is a good Trimmomatic parameter?
trimmomatic ngs rna-seq sequencing written 5 weeks ago by ag1805x • 80
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267
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6 follow
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trimmomaric command for a fasta file?
trimmomatic written 7 weeks ago by Nadin.asal • 0 • updated 7 weeks ago by Ram ♦ 15k
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0
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228
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0
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Trimmomatic error "Exception processing reads"
trimmomatic written 4 months ago by Lucila • 10 • updated 12 weeks ago by Biostar ♦♦ 20
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2
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256
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2
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How to read a loop over to read a file in a folder for many folders
trimmomatic filtering multiple files written 3 months ago by tcf.hcdg • 60 • updated 3 months ago by shenwei356 ♦ 3.8k
3
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1
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355
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1
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Trimmomatic output: how to include unpaired reads in the assembly?
trimmomatic trimming megahit assembling written 3 months ago by dark.lord • 0
3
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1
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184
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1
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Trimmomatic destroys right-hand paired-end sequences, how to avoid?
trimmomatic qc written 4 months ago by dec986 • 100 • updated 4 months ago by Martombo • 2.1k
5
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1
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212
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1
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Cannot match machine name with Machine Type
trimmomatic fastq qc rna-seq written 4 months ago by dec986 • 100 • updated 4 months ago by Devon Ryan ♦ 81k
2
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1
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586
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1
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How to remove Poly-A tails from from QuantSeq 3' FWD data using Trimmomatic
trimmomatic poly-a tails quantseq written 5 months ago by jerrywu1987 • 0
0
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1
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383
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1
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Minimum read length in Trimmomatic
trimmomatic rna-seq written 6 months ago by matiqau • 0 • updated 6 months ago by chen • 1.6k
1
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1
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452
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1
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trimming RNA-seq reads with adapter sequence?index? using trimmomatic
trimmomatic adapter rna-seq trim written 6 months ago by woongjaej • 10 • updated 6 months ago by Jacob Warner • 600
1
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1
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628
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1
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Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic paired-end written 6 months ago by dllopezr • 10 • updated 6 months ago by Carlo Yague • 4.0k
4
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1
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500
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1
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Trimmomatic not displaying summary
trimmomatic rna-seq written 7 months ago by kiddodoraemon • 10 • updated 7 months ago by Kevin Blighe ♦ 21k
1
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1
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1
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Interpretation of Results from trimmomatic
trimmomatic result rna-seq written 9 months ago by Ambika • 20 • updated 9 months ago by finswimmer ♦ 2.8k
2
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1
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793
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1
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Trimmomatic jar file
trimmomatic rna-seq jarfile written 9 months ago by Ambika • 20 • updated 9 months ago by Kevin Blighe ♦ 21k
1
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2
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2
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Unable to access jarfile trimmomatic-0.35
trimmomatic paired end reads rna-seq written 9 months ago by Ambika • 20
8
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1
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612
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1
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Additional sequences in adapter file cause trimming problem?
trimmomatic adapter trimming bbtools written 9 months ago by Anand Rao • 110
2
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1
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677
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7 follow
1
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automated script to trim paired end RNA seq reads using Trimmomatic
trimmomatic loops trimming rna-seq written 10 months ago by nikelle.petrillo • 80 • updated 10 months ago by h.mon ♦ 15k
0
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552
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k-mer overrepresentation of WGS Illumina reads
k-mer trimmomatic adapter trimming fastqc written 10 months ago by Anand Rao • 110
2
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398
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What could be the best explanation for a dip in phred quality score at the near beginning of reads?
trimmomatic illumina quality phred fastqc written 12 months ago by Vijay Lakhujani ♦ 2.5k
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running trimmomatic inside Trinity
trimmomatic trinity tool rnaseq assembly written 2.2 years ago by lay_0 • 40 • updated 13 months ago by Biostar ♦♦ 20
0
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385
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Trimmomatic trimming principle
trimmomatic read trimming written 13 months ago by shuchen • 10
0
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869
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rnaseq sequence analysis and trimming
trimmomatic fastqc rna-seq cutadapt written 14 months ago by Björn • 30 • updated 14 months ago by WouterDeCoster ♦ 29k
2
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1
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608
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1
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How to remove adaptors if you don't know their names/sequences? (eg from public data)
adaptors trimmomatic ngs trimming cutadapt written 14 months ago by rioualen • 270 • updated 14 months ago by vchris_ngs • 4.5k
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Do I need to download any specific adapters for Illumina small RNA sequencing kit?
adapter trimming trimmomatic small rna cutadapt written 15 months ago by bioinforesearchquestions • 140
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Trimmomatic -> STAR
trimmomatic star rna-seq written 15 months ago by xd_d • 90
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