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2
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Trinity Chrysalis/Butterfly Out of memory but still running?
trinity rna-seq written 6 days ago by mparker21 • 0
0
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0
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109
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0
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Trinity reads are not identical-
trimmomatic trinity rna-seq error assembly written 20 days ago by sneha.preha7 • 0
1
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0
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119
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0
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Trying to get access to the Trinity R commands...
trinity rna-seq R written 22 days ago by jon.brate • 200
2
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1
answer
142
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1
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De novo transcriptome assembly produce too many transcripts
assembly transcriptomics rna-seq trinity written 26 days ago by 21afiq • 0 • updated 24 days ago by Corentin • 230
0
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1
answer
131
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1
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How to generate a reference with several tissues?
trinity rna-seq assembly written 12 weeks ago by jyshiningsoul • 0 • updated 12 weeks ago by biokoala ♦ 3.6k
0
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1
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326
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1
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Annotation with de novo or genome guided transcriptome assembly
funannotate assembly trinity rna-seq annotation written 3 months ago by EarlyEvol • 0 • updated 3 months ago by h.mon ♦ 23k
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145
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Trinity ERROR during assembling extracted reads
assembly trinity written 4 months ago by evodevo110 • 0 • updated 3 months ago by biokoala ♦ 3.6k
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0
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183
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0
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Mapping both PE reads and Single-end reads into transcriptome
trinity strand-specific differential expression written 3 months ago by pbigbig • 190
1
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0
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251
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0
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What is the fate of low coverage region during Trinity assembly of transcriptome data?
trinity transcriptome assembly written 4 months ago by MAPK • 1.3k
2
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1
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334
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1
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Error when running Trinity
trinity rna-seq written 4 months ago by luzglongoria • 20 • updated 4 months ago by h.mon ♦ 23k
4
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1
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1.0k
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1
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Trinity de novo assembly without reference genome (community metatranscriptome)
trinity rna-seq metatranscriptome assembly written 14 months ago by steph_tf • 0 • updated 4 months ago by Biostar ♦♦ 20
3
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0
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414
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0
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How do you identify the contigs from trinity assembly?
trinity blast assembly written 4 months ago by MAPK • 1.3k
0
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0
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172
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0
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Format files in Trinity
trinity format files rna-seq written 4 months ago by luzglongoria • 20
1
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2
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1.3k
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2
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.4 years ago by ando.kelli • 40 • updated 4 months ago by egtabilin • 0
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934
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Why do RNA-seq reads not map against clones?
trinity clone mapping rsem rna-seq written 3.0 years ago by Ekarl2 • 80 • updated 5 months ago by RamRS ♦ 20k
0
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1
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223
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1
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Using Trinity for RNA-Seq analysis in model organisms
trinity rna-seq differential expression written 6 months ago by fred.s.kremer • 70 • updated 6 months ago by h.mon ♦ 23k
0
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0
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386
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0
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Problems running Trinity 2.6.6.
trinity rna-seq metatranscriptome written 6 months ago by Guillermo D. Huerta • 10 • updated 6 months ago by h.mon ♦ 23k
1
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0
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434
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5 follow
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Trinity Error encountered with thread, terminated abnormally, not all specified records have been retrieved.
trinity normalization rna-seq jellyfish written 7 months ago by sierraallinone • 20 • updated 6 months ago by Biostar ♦♦ 20
6
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1
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375
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1
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Low alignment with Trinity but high alignment in SAM files
genome trinity next-gen rna-seq alignment written 6 months ago by Moneeb Bajwa • 0 • updated 6 months ago by h.mon ♦ 23k
0
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0
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241
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0
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Detonate - Trinity De Novo Assembly Evaluator Error - invalid number of arguments when trying to execute the rsem-eval-calculate score command
rnaseq trinity detonate written 6 months ago by sierraallinone • 20 • updated 6 months ago by RamRS ♦ 20k
1
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1
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460
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1
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Trinity Inchworm Error - what does it mean?
rnaseq trinity inchworm error written 6 months ago by sierraallinone • 20
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0
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205
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Trinity assembly error on Galaxy
trinity error written 7 months ago by tshat003 • 0
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1
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1.3k
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1
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Error running Trinity
trinity error written 2.8 years ago by biokoala ♦ 3.6k
0
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259
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0
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News: Trinity Workshop (Berlin, 11-15 June 2018)
assembly news rna-seq trinity written 9 months ago by carlopecoraro2 • 840
1
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3
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3.9k
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3
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How to change fastq reads header for running Trinity on them?
trinity ngs rna-seq assembly written 3.8 years ago by seta • 1.1k • updated 11 months ago by cwbenson1993 • 0
0
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0
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390
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0
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How to retain transcripts from blastx output at a given coverage?
assembly blastx rna-seq trinity written 12 months ago by unawaz • 40
0
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2
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896
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2
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Problem with Trinity's abundance_estimates_to_matrix.pl
trinity rna-seq rsem matrix written 12 months ago by ando.kelli • 40
0
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1
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641
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6 follow
1
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Error in TRinity
trinity error in fastaq header written 13 months ago by majeedaasim • 30 • updated 13 months ago by genomax ♦ 62k
3
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2
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607
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2
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Contig cutoff of 300 bp - why? (Trinity transcriptome assembly)
trinity contigs rna-seq assembly written 14 months ago by BioBing • 100 • updated 14 months ago by jwhan.algae • 0
0
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0
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985
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0
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Trinity-v2.5.1 assembly generating bowtie 2 error
rnaseq trinity written 15 months ago by MAPK • 1.3k
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