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2
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Alternative to GMAP for mapping Trinity transcripts to genome
gmap trinity rna-seq transcripts mapping written 2.4 years ago by Tye Kahn • 10 • updated 10 weeks ago by 871322942 • 0
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1
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128
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1
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trouble abundance_estimates_to_matrix.pl (trinity2.4.0)
trinity rna-seq edger written 11 weeks ago by 1353288408 • 0 • updated 11 weeks ago by h.mon ♦ 27k
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166
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Trinity error using Perl script
trinity perl script written 3 months ago by sakshisingh.bioinfo • 30 • updated 3 months ago by ATpoint ♦ 21k
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264
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Prokka Annotation for Bacterial Transcriptomes
trinity bacteria prokka annotation written 3 months ago by gabriel.jabud • 20 • updated 3 months ago by natasha.sernova • 3.5k
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213
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Using unaligned reads as input for trinity
assembly rna-seq trinity written 4 months ago by Pranavathiyani G • 240
3
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1
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319
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5 follow
1
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comparing an assembly against close relatives
de-novo assembly blast trinity written 4 months ago by Assa Yeroslaviz • 1.2k • updated 4 months ago by colindaven • 1.6k
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137
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Error during running Trinity
software error trinity written 4 months ago by baffiak1902 • 10
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1
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218
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5 follow
1
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How to find read count for a newly discovered transcript
trinity rna-seq written 4 months ago by chahat_u • 110
3
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1
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301
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1
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merge transcripts id from results trinity
R rna-seq trinity written 5 months ago by yaghoub.amraei • 10 • updated 5 months ago by h.mon ♦ 27k
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190
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Problem in Trinity Assembly. How can I fix it?
assembly trinity written 5 months ago by trinimaclean • 0
2
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280
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0
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Trinity Chrysalis/Butterfly Out of memory but still running?
trinity rna-seq written 6 months ago by mparker21 • 0
0
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0
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256
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0
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Trinity reads are not identical-
trimmomatic trinity rna-seq error assembly written 6 months ago by sneha.preha7 • 0
1
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229
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Trying to get access to the Trinity R commands...
trinity rna-seq R written 7 months ago by jon.brate • 250
3
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1
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418
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1
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De novo transcriptome assembly produce too many transcripts
assembly transcriptomics rna-seq trinity written 7 months ago by 21afiq • 10 • updated 7 months ago by Corentin • 380
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1
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234
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1
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How to generate a reference with several tissues?
trinity rna-seq assembly written 9 months ago by jyshiningsoul • 0 • updated 9 months ago by lakhujanivijay ♦ 4.3k
0
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1
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617
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1
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Annotation with de novo or genome guided transcriptome assembly
funannotate assembly trinity rna-seq annotation written 9 months ago by EarlyEvol • 0 • updated 9 months ago by h.mon ♦ 27k
1
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0
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268
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0
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Trinity ERROR during assembling extracted reads
assembly trinity written 10 months ago by evodevo110 • 0 • updated 10 months ago by lakhujanivijay ♦ 4.3k
0
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0
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334
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Mapping both PE reads and Single-end reads into transcriptome
trinity strand-specific differential expression written 10 months ago by pbigbig • 200
1
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0
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362
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What is the fate of low coverage region during Trinity assembly of transcriptome data?
trinity transcriptome assembly written 10 months ago by MAPK • 1.4k
3
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1
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741
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1
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Error when running Trinity
trinity rna-seq written 10 months ago by luzglongoria • 20 • updated 10 months ago by h.mon ♦ 27k
4
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1
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1.5k
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1
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Trinity de novo assembly without reference genome (community metatranscriptome)
trinity rna-seq metatranscriptome assembly written 20 months ago by steph_tf • 0 • updated 10 months ago by Biostar ♦♦ 20
3
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636
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How do you identify the contigs from trinity assembly?
trinity blast assembly written 11 months ago by MAPK • 1.4k
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372
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Format files in Trinity
trinity format files rna-seq written 11 months ago by luzglongoria • 20
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2
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1.6k
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2
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.9 years ago by ando.kelli • 40 • updated 11 months ago by egtabilin • 0
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1.1k
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Why do RNA-seq reads not map against clones?
trinity clone mapping rsem rna-seq written 3.5 years ago by Ekarl2 • 90 • updated 11 months ago by RamRS ♦ 23k
0
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1
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320
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1
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Using Trinity for RNA-Seq analysis in model organisms
trinity rna-seq differential expression written 12 months ago by fred.s.kremer • 70 • updated 12 months ago by h.mon ♦ 27k
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0
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602
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Problems running Trinity 2.6.6.
trinity rna-seq metatranscriptome written 12 months ago by Guillermo D. Huerta • 10 • updated 12 months ago by h.mon ♦ 27k
1
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0
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755
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5 follow
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Trinity Error encountered with thread, terminated abnormally, not all specified records have been retrieved.
trinity normalization rna-seq jellyfish written 13 months ago by sierraallinone • 20 • updated 12 months ago by Biostar ♦♦ 20
6
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1
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509
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1
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Low alignment with Trinity but high alignment in SAM files
genome trinity next-gen rna-seq alignment written 13 months ago by Moneeb Bajwa • 0 • updated 13 months ago by h.mon ♦ 27k
0
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402
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Detonate - Trinity De Novo Assembly Evaluator Error - invalid number of arguments when trying to execute the rsem-eval-calculate score command
rnaseq trinity detonate written 13 months ago by sierraallinone • 20 • updated 13 months ago by RamRS ♦ 23k
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