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<prev • 200 results • page 1 of 7 • next >
0
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1.8k
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0
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Trinity-v2.5.1 assembly generating bowtie 2 error
rnaseq trinity written 3.0 years ago by MAPK • 1.6k • updated 2 days ago by Biostar ♦♦ 20
0
votes
0
answers
91
views
0
answers
DESeq2 and DEXSeq
dexseq trinity deseq2 written 19 days ago by pthom010 • 0
5
votes
0
answers
195
views
0
answers
Using Trinity for DGE - how to input study design
trinity trinityrnaseq denovo assembly written 9 weeks ago by hydra_questions • 20 • updated 24 days ago by Biostar ♦♦ 20
0
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0
answers
107
views
0
answers
issue with autotrinotate.pl
trinity trinotate trinityrnaseq written 5 weeks ago by hydra_questions • 20
3
votes
1
answer
165
views
1
answer
Gene ID's for a trinity assembled de novo transcriptome
R rna-seq trinity written 7 weeks ago by bryce.thomas • 0
2
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0
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107
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0
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How to move Trinity data into RStudio
trinity analysis dge written 9 weeks ago by hydra_questions • 20
6
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2
answers
243
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2
answers
How to select the best isoform for a differential expressed gene in Trinity?
trinity deseq2 written 4 months ago by upendrakumar.devisetty • 370 • updated 4 months ago by h.mon ♦ 31k
1
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0
answers
118
views
0
answers
Assemble A1 and A2 reads using Trinity before running blastx on them
assembly blastx trinity written 4 months ago by kmkdesilva • 90
1
vote
1
answer
160
views
1
answer
DESeq2 on de novo reads
trinity deseq2 rsem written 4 months ago by pthom010 • 0 • updated 4 months ago by h.mon ♦ 31k
0
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0
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129
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0
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Location of kallisto or RSEM output directories
assembly rna-seq trinity written 6 months ago by AM • 0
0
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1
answer
208
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1
answer
fastq headers problem with Trinity
trinity fastq written 7 months ago by agata • 10
3
votes
1
answer
319
views
1
answer
Normalization: Genome-guided de novo assembly with STAR and trinity
trinity star rna-seq genome-guided assembly written 6 months ago by lucask3 • 20 • updated 6 months ago by h.mon ♦ 31k
1
vote
1
answer
225
views
1
answer
Question about blastx output
assembly blastx rna-seq trinity written 8 months ago by yinbinqiu • 0
0
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0
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133
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0
answers
fixing error in trinity
trinity rna-seq written 8 months ago by nitishd.dave • 20 • updated 8 months ago by finswimmer ♦ 14k
4
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1
answer
1.8k
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7 follow
1
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EvidentialGene reduces redundancy of de novo transcriptome assembly?
assembly transcriptome rna-seq trinity redundancy written 3.4 years ago by crimsontabaq • 50 • updated 8 months ago by reutnuri • 0
1
vote
0
answers
176
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0
answers
min_contig_length parameter in Trinity - Isoforms discrimination
assembly transcriptome trinity written 8 months ago by Light92 • 30
3
votes
0
answers
269
views
0
answers
Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic trinity assembly transcriptome written 8 months ago by Light92 • 30
0
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0
answers
205
views
0
answers
Trinity RSEM TMM matrix
assembly trinity rna-seq rsem count written 8 months ago by ysbaek • 0
2
votes
0
answers
390
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0
answers
Differential expression of different sequence runs - Trinity?
trinity de tool rna-seq written 8 months ago by rebecca.mekler • 0 • updated 8 months ago by Asaf ♦ 8.4k
1
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0
answers
283
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0
answers
Comparing Sample replicates with PtR (Trinity). Are they normalized?
trinity rna-seq written 9 months ago by nidhi.vijayan13 • 20 • updated 8 months ago by Biostar ♦♦ 20
5
votes
0
answers
2.7k
views
5 follow
0
answers
Genome guided assembly with Trinity using STAR genome index
trinity star rna-seq written 3.3 years ago by nikelle.petrillo • 100 • updated 9 months ago by Chanderkant Chaudhary • 0
0
votes
0
answers
343
views
0
answers
Help with genome guided de novo assembly in trinity
assembly zebrafish trinity rna-seq genome guided written 10 months ago by vrea • 0
1
vote
1
answer
460
views
1
answer
Trinity run_DE_analysis samples.txt file format?
trinity rna-seq written 11 months ago by nidhi.vijayan13 • 20
2
votes
1
answer
228
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1
answer
Trinity transcriptome assembly
trinity rna-seq assembly written 11 months ago by danvoronov • 10 • updated 11 months ago by h.mon ♦ 31k
0
votes
1
answer
537
views
5 follow
1
answer
Converting an output de-novo transcriptome assembled with Trinity to a .gff3 file
trinity written 13 months ago by Light92 • 30 • updated 11 months ago by h.mon ♦ 31k
0
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0
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337
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0
answers
How to retain Trinity Transcriptome assembly headers after running Transdecoder on the assembly?
assembly trinity rna-seq transdecoder written 14 months ago by Shahzad • 10 • updated 12 months ago by Biostar ♦♦ 20
1
vote
0
answers
510
views
0
answers
RSEM output expected count interpretation
trinity rsem bowtie2 written 12 months ago by jonathon481 • 10
0
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0
answers
306
views
0
answers
GOplot error - Gene Ontology plot generation errors
trinity goplot gene ontology bioconductor written 13 months ago by Light92 • 30
4
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0
answers
377
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0
answers
Maker2 Transcriptome Input
annotation trinity maker2 transcriptome written 13 months ago by Colaptes • 40
3
votes
1
answer
351
views
1
answer
N 50 Value
assembly transcriptome trinity written 13 months ago by ravichandiranbt • 10 • updated 13 months ago by WouterDeCoster ♦ 44k
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