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0
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Error running Trinity
trinity error written 2.1 years ago by Vijay Lakhujani ♦ 2.5k
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0
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96
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0
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News: Trinity Workshop (Berlin, 11-15 June 2018)
assembly news rna-seq trinity written 7 weeks ago by carlopecoraro2 • 710
1
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3
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3.0k
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3
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How to change fastq reads header for running Trinity on them?
trinity ngs rna-seq assembly written 3.1 years ago by seta • 980 • updated 3 months ago by cwbenson1993 • 0
0
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0
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236
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0
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How to retain transcripts from blastx output at a given coverage?
assembly blastx rna-seq trinity written 4 months ago by unawaz • 0
0
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2
answers
354
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2
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Problem with Trinity's abundance_estimates_to_matrix.pl
trinity rna-seq rsem matrix written 4 months ago by ando.kelli • 30
0
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1
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322
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6 follow
1
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Error in TRinity
trinity error in fastaq header written 5 months ago by majeedaasim • 20 • updated 5 months ago by genomax ♦ 49k
2
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1
answer
445
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1
answer
Trinity de novo assembly without reference genome (community metatranscriptome)
trinity rna-seq metatranscriptome assembly written 6 months ago by steph_tf • 0 • updated 6 months ago by manuelmendoza • 20
3
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2
answers
336
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2
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Contig cutoff of 300 bp - why? (Trinity transcriptome assembly)
trinity contigs rna-seq assembly written 6 months ago by BioBing • 90 • updated 6 months ago by jwhan.algae • 0
0
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0
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530
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0
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Trinity-v2.5.1 assembly generating bowtie 2 error
rnaseq trinity written 7 months ago by MAPK • 1.2k
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2
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446
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2
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align_and_estimate_abundance after assembly in Trinity
assembly alignment rna-seq trinity written 8 months ago by nasreenbano91 • 0
0
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1
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337
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1
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Rna seq Denovo assembly
trinity sequence rna-seq alignment written 7 months ago by anitha.b • 0 • updated 7 months ago by aniruddhapandit • 0
1
vote
1
answer
559
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1
answer
Problem in installing Trinity.
software error trinity written 8 months ago by majeedaasim • 20 • updated 8 months ago by h.mon ♦ 15k
5
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1
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1.7k
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1
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Trinity run failed -- Phase 1
trinity rna-seq written 23 months ago by ddowlin • 50 • updated 8 months ago by Biostar ♦♦ 20
2
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1
answer
490
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1
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CD-HIT can not complete remove redundant transcript
cd-hit-est trinity written 9 months ago by xioli2013 • 0 • updated 9 months ago by Vijay Lakhujani ♦ 2.5k
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592
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Trinity: how to avoid out of memory error in butterfly
software error trinity butterfly rna-seq written 9 months ago by Michael Dondrup ♦ 44k
0
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0
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821
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0
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Trinity Error, not recognizing read name formatting: [1]
de novo trinity transcriptome rna-seq assembly written 9 months ago by Shahzad • 10
0
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0
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776
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0
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Genome guided assembly with Trinity using STAR genome index
trinity star rna-seq written 11 months ago by nikelle.petrillo • 80
0
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0
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448
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0
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Trinity run time
trinity rna-seq written 11 months ago by Bioinformatics_finn • 0
0
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0
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329
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0
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Gene duplications in Transcriptome
genome trinity duplication transcriptome written 11 months ago by Edphid • 0
7
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2
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529
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2
answers
Assembling a Transcriptome using Trinity with multiple Illumina Fastq files
trinity illumina rna-seq transcriptome written 11 months ago by Bioinformatics_finn • 0 • updated 11 months ago by carlopecoraro2 • 710
0
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1
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486
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1
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PASA pipeline: just compare to the reference annotation
trinity pasa isoforms rna-seq transcripts written 11 months ago by dovah • 30
9
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1
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521
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5 follow
1
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Transcriptome data: detection of large genomic insert of unknown sequence
trinity cufflinks rna-seq written 12 months ago by ashish • 200 • updated 11 months ago by Michael Dondrup ♦ 44k
3
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1
answer
670
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5 follow
1
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EvidentialGene reduces redundancy of de novo transcriptome assembly?
assembly transcriptome rna-seq trinity redundancy written 12 months ago by crimsontabaq • 40 • updated 12 months ago by gilbert.bionet • 120
3
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0
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2.0k
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running trimmomatic inside Trinity
trimmomatic trinity tool rnaseq assembly written 2.2 years ago by lay_0 • 40 • updated 12 months ago by Biostar ♦♦ 20
1
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1
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968
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1
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What happens to intermediate Trinity files when assembly terminated pre-completion
trinity rna-seq written 2.4 years ago by peri.tobias • 0 • updated 13 months ago by Biostar ♦♦ 20
0
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1
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686
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1
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DESeq2 + de novo assembly
de novo trinity deseq2 rna-seq dge written 13 months ago by pablo61991 • 40 • updated 13 months ago by Biojl • 1.6k
4
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1
answer
579
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1
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htseq read count zero ?
htseq trinity rna-seq written 13 months ago by cvu • 110 • updated 13 months ago by Carlo Yague • 4.0k
2
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0
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677
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0
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Fistful of failures with Bowtie2 in Trinity
software error trinity rna-seq bowtie2 written 13 months ago by akijl • 20
0
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0
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404
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0
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Jellyfish stalls on a multi-CPU server (Trinity pipe)
trinity rna-seq jellyfish written 14 months ago by roussine • 0
1
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1
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1.6k
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1
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run Trinity on a server
de novo assembly trinity inchworm written 2.5 years ago by luigi.marongiu • 0 • updated 14 months ago by Biostar ♦♦ 20
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