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Using unaligned reads as input for trinity
assembly rna-seq trinity written 8 days ago by Pranavathiyani G • 220
3
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1
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209
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5 follow
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comparing an assembly against close relatives
de-novo assembly blast trinity written 19 days ago by Assa Yeroslaviz • 1.2k • updated 10 days ago by colindaven • 1.2k
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57
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Error during running Trinity
software error trinity written 12 days ago by baffiak1902 • 10
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1
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112
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5 follow
1
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How to find read count for a newly discovered transcript
trinity rna-seq written 15 days ago by chahat_u • 110
3
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1
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168
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1
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merge transcripts id from results trinity
R rna-seq trinity written 6 weeks ago by yaghoub.amraei • 10 • updated 6 weeks ago by h.mon ♦ 24k
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115
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Problem in Trinity Assembly. How can I fix it?
assembly trinity written 7 weeks ago by trinimaclean • 0
2
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189
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Trinity Chrysalis/Butterfly Out of memory but still running?
trinity rna-seq written 10 weeks ago by mparker21 • 0
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168
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Trinity reads are not identical-
trimmomatic trinity rna-seq error assembly written 12 weeks ago by sneha.preha7 • 0
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175
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Trying to get access to the Trinity R commands...
trinity rna-seq R written 3 months ago by jon.brate • 200
2
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1
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221
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1
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De novo transcriptome assembly produce too many transcripts
assembly transcriptomics rna-seq trinity written 3 months ago by 21afiq • 0 • updated 3 months ago by Corentin • 260
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173
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1
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How to generate a reference with several tissues?
trinity rna-seq assembly written 5 months ago by jyshiningsoul • 0 • updated 5 months ago by Vijay Lakhujani ♦ 4.0k
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1
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462
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1
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Annotation with de novo or genome guided transcriptome assembly
funannotate assembly trinity rna-seq annotation written 5 months ago by EarlyEvol • 0 • updated 5 months ago by h.mon ♦ 24k
1
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200
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Trinity ERROR during assembling extracted reads
assembly trinity written 6 months ago by evodevo110 • 0 • updated 6 months ago by Vijay Lakhujani ♦ 4.0k
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247
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Mapping both PE reads and Single-end reads into transcriptome
trinity strand-specific differential expression written 6 months ago by pbigbig • 190
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298
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What is the fate of low coverage region during Trinity assembly of transcriptome data?
trinity transcriptome assembly written 6 months ago by MAPK • 1.4k
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502
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1
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Error when running Trinity
trinity rna-seq written 6 months ago by luzglongoria • 30 • updated 6 months ago by h.mon ♦ 24k
4
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1
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1.2k
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1
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Trinity de novo assembly without reference genome (community metatranscriptome)
trinity rna-seq metatranscriptome assembly written 16 months ago by steph_tf • 0 • updated 6 months ago by Biostar ♦♦ 20
3
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505
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How do you identify the contigs from trinity assembly?
trinity blast assembly written 7 months ago by MAPK • 1.4k
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250
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Format files in Trinity
trinity format files rna-seq written 7 months ago by luzglongoria • 30
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2
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.5 years ago by ando.kelli • 40 • updated 7 months ago by egtabilin • 0
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Why do RNA-seq reads not map against clones?
trinity clone mapping rsem rna-seq written 3.2 years ago by Ekarl2 • 90 • updated 7 months ago by RamRS ♦ 21k
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1
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266
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1
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Using Trinity for RNA-Seq analysis in model organisms
trinity rna-seq differential expression written 8 months ago by fred.s.kremer • 70 • updated 8 months ago by h.mon ♦ 24k
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477
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Problems running Trinity 2.6.6.
trinity rna-seq metatranscriptome written 8 months ago by Guillermo D. Huerta • 10 • updated 8 months ago by h.mon ♦ 24k
1
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579
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5 follow
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Trinity Error encountered with thread, terminated abnormally, not all specified records have been retrieved.
trinity normalization rna-seq jellyfish written 9 months ago by sierraallinone • 20 • updated 8 months ago by Biostar ♦♦ 20
6
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1
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432
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1
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Low alignment with Trinity but high alignment in SAM files
genome trinity next-gen rna-seq alignment written 9 months ago by Moneeb Bajwa • 0 • updated 9 months ago by h.mon ♦ 24k
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310
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Detonate - Trinity De Novo Assembly Evaluator Error - invalid number of arguments when trying to execute the rsem-eval-calculate score command
rnaseq trinity detonate written 9 months ago by sierraallinone • 20 • updated 9 months ago by RamRS ♦ 21k
1
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568
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1
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Trinity Inchworm Error - what does it mean?
rnaseq trinity inchworm error written 9 months ago by sierraallinone • 20
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245
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Trinity assembly error on Galaxy
trinity error written 9 months ago by tshat003 • 0
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1
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1.4k
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1
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Error running Trinity
trinity error written 2.9 years ago by Vijay Lakhujani ♦ 4.0k
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303
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News: Trinity Workshop (Berlin, 11-15 June 2018)
assembly news rna-seq trinity written 11 months ago by carlopecoraro2 • 910
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