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2
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CD-HIT can not complete remove redundant transcript
cd-hit-est trinity written 20 days ago by xioli2013 • 0 • updated 19 days ago by Vijay Lakhujani • 1.2k
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0
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202
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0
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Trinity: how to avoid out of memory error in butterfly
software error trinity butterfly rna-seq written 24 days ago by Michael Dondrup ♦ 43k
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0
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161
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0
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Trinity Error, not recognizing read name formatting: [1]
de novo trinity transcriptome rna-seq assembly written 28 days ago by Shahzad • 10
0
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0
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211
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0
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Genome guided assembly with Trinity using STAR genome index
trinity star rna-seq written 10 weeks ago by nikelle.petrillo • 70
0
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0
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150
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0
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Trinity run time
trinity rna-seq written 10 weeks ago by Bioinformatics_finn • 0
0
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0
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122
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0
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Gene duplications in Transcriptome
genome trinity duplication transcriptome written 10 weeks ago by Edphid • 0
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2
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239
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2
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Assembling a Transcriptome using Trinity with multiple Illumina Fastq files
trinity illumina rna-seq transcriptome written 10 weeks ago by Bioinformatics_finn • 0 • updated 10 weeks ago by carlopecoraro2 • 510
0
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1
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172
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1
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PASA pipeline: just compare to the reference annotation
trinity pasa isoforms rna-seq transcripts written 12 weeks ago by dovah • 30
9
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1
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262
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5 follow
1
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Transcriptome data: detection of large genomic insert of unknown sequence
trinity cufflinks rna-seq written 3 months ago by ashish • 110 • updated 12 weeks ago by Michael Dondrup ♦ 43k
3
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1
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233
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5 follow
1
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EvidentialGene reduces redundancy of de novo transcriptome assembly?
assembly transcriptome rna-seq trinity redundancy written 3 months ago by crimsontabaq • 40 • updated 3 months ago by gilbert.bionet • 60
2
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0
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1.4k
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running trimmomatic inside Trinity
trimmomatic trinity tool rnaseq assembly written 17 months ago by lay_0 • 30 • updated 4 months ago by Biostar ♦♦ 20
1
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1
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710
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1
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What happens to intermediate Trinity files when assembly terminated pre-completion
trinity rna-seq written 20 months ago by peri.tobias • 0 • updated 4 months ago by Biostar ♦♦ 20
0
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1
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259
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1
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DESeq2 + de novo assembly
de novo trinity deseq2 rna-seq dge written 4 months ago by pablo61991 • 30 • updated 4 months ago by Biojl • 1.5k
4
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1
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191
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1
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htseq read count zero ?
htseq trinity rna-seq written 4 months ago by cvu • 110 • updated 4 months ago by Carlo Yague • 3.2k
2
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0
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270
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0
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Fistful of failures with Bowtie2 in Trinity
software error trinity rna-seq bowtie2 written 4 months ago by akijl • 20
0
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0
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167
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0
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Jellyfish stalls on a multi-CPU server (Trinity pipe)
trinity rna-seq jellyfish written 5 months ago by roussine • 0
1
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1
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1.2k
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1
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run Trinity on a server
de novo assembly trinity inchworm written 21 months ago by luigi.marongiu • 0 • updated 5 months ago by Biostar ♦♦ 20
1
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1
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402
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1
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"Optimal" setting of CPU and max_memory in Trinity
trinity ram cpu written 8 months ago by al-ash • 0 • updated 5 months ago by euduca • 0
0
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1
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177
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1
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Clustering with Trinity suite changes order of sample names
trinity de clustering rna-seq written 5 months ago by ando.kelli • 30
2
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0
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314
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0
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Alternative to GMAP for mapping Trinity transcripts to genome
gmap trinity rna-seq transcripts mapping written 5 months ago by John Eightecho • 0
3
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1
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299
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1
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RNASeq reads from two bacterial species
trinity co-culture kallisto rsem rna-seq written 7 months ago by alyamahmoud • 0 • updated 7 months ago by h.mon ♦ 8.7k
0
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1
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399
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1
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Trinity RNASeq DNASeq assembly
assembly next-gen trinity written 7 months ago by nazaninhoseinkhan • 190 • updated 7 months ago by Antonio R. Franco • 3.4k
4
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1
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400
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1
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Where to find the Trinity assembly statistics?
trinity rna-seq denovo written 8 months ago by BioBing • 80 • updated 8 months ago by st.ph.n • 1.6k
0
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1
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2.1k
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1
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How to set path of bowtie for trinity ?
assembly rna-seq bowtie trinity written 21 months ago by iamtuttu5 • 40 • updated 8 months ago by Krithi.S • 10
4
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1
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1.1k
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1
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Trinity run failed -- Phase 1
trinity rna-seq written 14 months ago by ddowlin • 50 • updated 8 months ago by Biostar ♦♦ 20
0
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0
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344
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0
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Expression analysis by Trinity
trinity rna-seq written 8 months ago by satomuraatsushi • 0
3
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2
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4.2k
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2
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Count Tables For Deseq [After Alignreads.Pl (Trinity)]
trinity deseq written 5.0 years ago by lzsph • 70 • updated 8 months ago by satomuraatsushi • 0
0
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1
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450
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1
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Confusion regarding Trinity analyze_diff_expr.pl
trinity differential expression transcriptome written 9 months ago by pbigbig • 180 • updated 9 months ago by Farbod • 3.0k
2
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1
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409
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6 follow
1
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Trouble with installation Trinity on Linux 32 bit
trinity software installation written 9 months ago by seta • 920 • updated 9 months ago by Farbod • 3.0k
0
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0
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362
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0
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Comparing Trinity Assembly Results
trinity rna-seq assembly written 9 months ago by tanz.renner • 0 • updated 9 months ago by genomax ♦ 33k
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