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<prev • 179 results • page 1 of 6 • next >
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Converting an output de-novo transcriptome assembled with Trinity to a .gff3 file
trinity written 6 weeks ago by Light92 • 20 • updated just now by h.mon ♦ 28k
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170
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How to retain Trinity Transcriptome assembly headers after running Transdecoder on the assembly?
assembly trinity rna-seq transdecoder written 11 weeks ago by Shahzad • 10 • updated 17 days ago by Biostar ♦♦ 20
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89
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RSEM output expected count interpretation
trinity rsem bowtie2 written 4 weeks ago by jonathon481 • 0
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89
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GOplot error - Gene Ontology plot generation errors
trinity goplot gene ontology bioconductor written 6 weeks ago by Light92 • 20
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161
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Maker2 Transcriptome Input
annotation trinity maker2 transcriptome written 7 weeks ago by Colaptes • 40
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149
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N 50 Value
assembly transcriptome trinity written 7 weeks ago by ravichandiranbt • 10 • updated 7 weeks ago by WouterDeCoster ♦ 42k
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141
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Trinity RSEM Bowtie2 align_and_estimate_abundance script error
trinity rsem rna-seq bowtie2 written 8 weeks ago by Light92 • 20 • updated 8 weeks ago by genomax ♦ 74k
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Alternative to GMAP for mapping Trinity transcripts to genome
gmap trinity rna-seq transcripts mapping written 2.6 years ago by Tye Kahn • 10 • updated 5 months ago by 871322942 • 0
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213
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trouble abundance_estimates_to_matrix.pl (trinity2.4.0)
trinity rna-seq edger written 5 months ago by 1353288408 • 0 • updated 5 months ago by h.mon ♦ 28k
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Trinity error using Perl script
trinity perl script written 6 months ago by sakshisingh.bioinfo • 30 • updated 6 months ago by ATpoint ♦ 25k
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Prokka Annotation for Bacterial Transcriptomes
trinity bacteria prokka annotation written 6 months ago by gabriel.jabud • 20 • updated 6 months ago by natasha.sernova • 3.6k
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263
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Using unaligned reads as input for trinity
assembly rna-seq trinity written 7 months ago by Pranavathiyani G • 250
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367
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5 follow
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comparing an assembly against close relatives
de-novo assembly blast trinity written 7 months ago by Assa Yeroslaviz • 1.2k • updated 7 months ago by colindaven • 1.8k
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189
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Error during running Trinity
software error trinity written 7 months ago by baffiak1902 • 10
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259
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5 follow
1
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How to find read count for a newly discovered transcript
trinity rna-seq written 7 months ago by chahat_u • 140
3
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1
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383
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1
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merge transcripts id from results trinity
R rna-seq trinity written 8 months ago by yaghoub.amraei • 10 • updated 8 months ago by h.mon ♦ 28k
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258
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Problem in Trinity Assembly. How can I fix it?
assembly trinity written 8 months ago by trinimaclean • 0
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329
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Trinity Chrysalis/Butterfly Out of memory but still running?
trinity rna-seq written 9 months ago by mparker21 • 0
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301
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Trinity reads are not identical-
trimmomatic trinity rna-seq error assembly written 9 months ago by sneha.preha7 • 0
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275
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Trying to get access to the Trinity R commands...
trinity rna-seq R written 9 months ago by jon.brate • 250
3
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1
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575
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De novo transcriptome assembly produce too many transcripts
assembly transcriptomics rna-seq trinity written 9 months ago by 21afiq • 10 • updated 9 months ago by Corentin • 430
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273
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How to generate a reference with several tissues?
trinity rna-seq assembly written 11 months ago by jyshiningsoul • 0 • updated 11 months ago by lakhujanivijay ♦ 4.5k
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698
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Annotation with de novo or genome guided transcriptome assembly
funannotate assembly trinity rna-seq annotation written 12 months ago by EarlyEvol • 0 • updated 12 months ago by h.mon ♦ 28k
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323
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Trinity ERROR during assembling extracted reads
assembly trinity written 12 months ago by evodevo110 • 0 • updated 12 months ago by lakhujanivijay ♦ 4.5k
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400
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Mapping both PE reads and Single-end reads into transcriptome
trinity strand-specific differential expression written 12 months ago by pbigbig • 200
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What is the fate of low coverage region during Trinity assembly of transcriptome data?
trinity transcriptome assembly written 13 months ago by Genetics • 1.5k
3
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1
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937
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1
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Error when running Trinity
trinity rna-seq written 13 months ago by luzglongoria • 20 • updated 13 months ago by h.mon ♦ 28k
5
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1
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6 follow
1
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Trinity de novo assembly without reference genome (community metatranscriptome)
trinity rna-seq metatranscriptome assembly written 23 months ago by steph_tf • 10 • updated 13 months ago by Biostar ♦♦ 20
3
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711
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How do you identify the contigs from trinity assembly?
trinity blast assembly written 13 months ago by Genetics • 1.5k
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Format files in Trinity
trinity format files rna-seq written 13 months ago by luzglongoria • 20
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