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4
votes
1
answer
142
views
1
answer
How to identify cluster membership from the tSNE coordinates?
tsne dimention reduction dimensionality reduction written 5 weeks ago by Researcher • 60 • updated 5 weeks ago by Mensur Dlakic • 6.7k
2
votes
0
answers
237
views
0
answers
Tool: KNetL versus tSNE and UMAP for dimensionality reduction in single cell RNA-seq
tsne knetl dimensionality reduction umap tool written 3 months ago by alireza.khodadadi.j • 60
1
vote
0
answers
152
views
0
answers
Bioinformatics: tSNE Perplexity parameter
tsne single cell experiment rna-seq written 4 months ago by tom5 • 0
4
votes
0
answers
1.9k
views
0
answers
Tool: 3D UMAP and 3D tSNE visualization for Seurat
tool tsne scrnaseq 3d umap rna-seq written 11 months ago by DrAcula • 40
0
votes
0
answers
225
views
0
answers
Plot features on tsne plot with high pLi scores
pli genes tsne rna-seq seurat written 12 months ago by asmariyaz23 • 10 • updated 12 months ago by Biostar ♦♦ 20
0
votes
1
answer
836
views
1
answer
Seurat cluster is split and appears in 2 different areas on the tsne plot
R tsne seurat cluster_analysis written 14 months ago by asmariyaz23 • 10
22
votes
2
answers
2.5k
views
5 follow
2
answers
Why do PCA+tSNE/viSNE or PCA+UMAP, and not just tSNE/viSNE or UMAP on their own?
tsne dimension reduction pca visne umap written 16 months ago by Kevin Blighe ♦ 65k • updated 16 months ago by chris86 • 340
7
votes
3
answers
6.9k
views
8 follow
3
answers
Making a 3d tSNE Plot in Seurat for scRNA-seq
scrna-seq tsne rna-seq seurat written 3.1 years ago by asyndeton17 • 40 • updated 16 months ago by DrAcula • 40
5
votes
1
answer
1.8k
views
1
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Clusters moving for same dataset and code using tSNE
tsne clustering scrnaseq seurat written 19 months ago by chilifan • 70 • updated 19 months ago by i.sudbery ♦ 9.2k
46
votes
6
answers
9.8k
views
26 follow
6
answers
why PCA for RNA-Seq but tSNE for scRNA-seq?
scrna-seq pca tsne rna-seq written 2.4 years ago by CY • 550 • updated 22 months ago by Min Dai • 160
1
vote
0
answers
1.1k
views
0
answers
How to reproduce MATLAB tsne('algorithm', 'exact') result in R?
tsne pca matlab R rtsne written 2.1 years ago by mk • 150
1
vote
1
answer
3.1k
views
1
answer
Why different tSNE plot with Seurat and Monocle if they'r using the same R package?
single-cell R monocle tsne seurat written 2.3 years ago by jgarces • 20 • updated 2.3 years ago by dppb05 • 90
2
votes
0
answers
1.3k
views
0
answers
How to fix (find) number of dimensions while reducing dimensions in tSNE method?
tsne pca rna-seq R written 2.5 years ago by John • 210
0
votes
0
answers
1.5k
views
0
answers
scRNA-seq: how to visualize SNN-Cliq clustering result
single-cell snn-cliq snn tsne scrnaseq written 3.1 years ago by pacman • 50
0
votes
0
answers
4.7k
views
0
answers
R script - Error: protect(): protection stack overflow
tsne bigdata pca R written 3.3 years ago by Chen Mor • 0
0
votes
0
answers
1.8k
views
0
answers
Determining Cluster Criteria From FlowSOM/RtSNE
R tsne written 3.9 years ago by CMosychuk • 20
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