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written 5 weeks ago by
CY • 130
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4 weeks ago by
harold.smith.tarheel • 4.1k
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written 9 months ago by
asyndeton17 • 10
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7 months ago by
garyhokawai • 20
Recent Votes
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- C: bcl2fastq report the whole sequences without trimming index and adaptor
- C: bcl2fastq report the whole sequences without trimming index and adaptor
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Recent Replies
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C: Could you help me set up a VCF filter? by
WouterDeCoster ♦ 29k
I'm sorry, I just read this in the manual: > GEMINI solely supports human genetic variation m...
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C: Could you help me set up a VCF filter? by
WouterDeCoster ♦ 29k
I assume you haven't done the alignment yourself? If so, you could convert the reads back to fast...
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C: Could you help me set up a VCF filter? by
flutabex • 0
Thank you, I will have a look.
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C: Could you help me set up a VCF filter? by
WouterDeCoster ♦ 29k
I haven't used it myself, but perhaps gemini is a solution http://gemini.readthedocs.io/en/latest/
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C: bcl2fastq report the whole sequences without trimming index and adaptor by
genomax ♦ 49k
Ok. Sounds like your issue is on experimental side rather than the demultiplexing. Check to see i...
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C: Could you help me set up a VCF filter? by
flutabex • 0
Hi thanks for replying. That's ok, I understand about not asking personal health questions here. ...
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A: Matched Paired Tumour-Normal DEA of BRCA using data downloaded using TCGAbiolink by
Kevin Blighe ♦ 21k
Hello aluesley1, When you are subsetting your tumour data, you just have the order incorrect whe...
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C: bcl2fastq report the whole sequences without trimming index and adaptor by
sckinta • 420
I am not sure that is the issue. We prepared the library and sequenced them in house. We demultip...
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C: bcl2fastq report the whole sequences without trimming index and adaptor by
sckinta • 420
Yes, I tried that and be able to extract index for each read. However, after parsing the index se...
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C: bcl2fastq report the whole sequences without trimming index and adaptor by
sckinta • 420
Yeah, after checking the illumina sequence steps, I started to get that bcl2fastq does not trim d...
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C: Samtools mpileup returns empty vcf file by
shreyasibiswas88 • 30
I have checked and re-checked without any success. It is bizarre to me as it has worked in the pa...
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C: How can i do enrichment analysis more precisely for differential expression anal by
fereshteh • 10
I use R version 3.5 on windows. and installed dependency packages 'gplots'
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