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90,481 results • Page
1 of 1810
Sort: Rank
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Votes
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0
votes
0
replies
4
views
How to combine 2 incomplete GTF
Cufflinks
Cuffcompare
GTF
Cuffmerge
Merge
6 minutes ago by
rafaelsolersanblas
▴ 30
1
vote
2
replies
108
views
R command worked yesterday, but stalls today?
R
updated 19 minutes ago by
ATpoint
48k • written 1 day ago by
cthangav
• 0
0
votes
3
replies
71
views
Snakemake with bwa_mem2_mem unable to open the ref file and doesn' t work
bwa-mem2
conda
snakemake
pipeline
9 minutes ago by
aka
• 0
1
vote
2
replies
33
views
Extract chromosome 1 - 22 fasta file
fasta
updated 1 hour ago by
lmlukoseviciute
▴ 10 • written 2 hours ago by
shubhamkumbhar420
• 0
0
votes
1
reply
47
views
GATK GenomicsDBImport for consolidate GVCF
GATK
GenomicsDBImport
consolidate
updated 2 hours ago by
Pierre Lindenbaum
135k • written 3 hours ago by
mscpythonstudy
• 0
0
votes
1
reply
52
views
Question about methods monitoring the change from dsDNA/RNA to ssRNA/DNA
RNA
DNA
chaser
Substrate
updated 1 hour ago by
ATpoint
48k • written 4 hours ago by
1063625819
• 0
0
votes
1
reply
59
views
SHAPEIT2 - ERROR "BAD RECOMBINATION RATE"
shapeit2
phasing
updated 1 hour ago by
4galaxy77
▴ 400 • written 5 hours ago by
GiantSilverSoy
▴ 20
580
votes
155
replies
64k
views
89 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
handbook
tutorial
training
News
updated 6 days ago by
Biostar
10 • written 4.4 years ago by
Istvan Albert
87k
0
votes
0
replies
63
views
How to download pedigree (SNP's) from cattle
pedigree
data
snp
inference
haplotype
6 hours ago by
S. Roa
• 0
0
votes
0
replies
39
views
Job:
Multiple data scientist positions in computational biomedicine
CompBiology
Bioinformatics
MachineLearning
7 hours ago by
pandey.gaurav
▴ 130
3
votes
3
replies
103
views
GSEA for RNA_seq dataset
DEGs
GSEA
RNA_seq
updated 7 hours ago by
Zhilong Jia
★ 1.7k • written 14 hours ago by
1961012
• 0
0
votes
0
replies
26
views
OMA output document error
OMA
output
document
error
7 hours ago by
Yong
• 0
4
votes
4
replies
97
views
Hunting invisible characters?
adaptor
adapter
grep
updated 9 hours ago by
seidel
7.6k • written 12 hours ago by
geneticatt
▴ 120
0
votes
0
replies
36
views
Alternative Refence Allele in PLINK2 data files
PLINK2
ALLELE
12 hours ago by
carlstat123
• 0
0
votes
3
replies
108
views
How can I Extract Transposable element from a new genome assembly?
genome
transposons
assembly
annotations
updated 1 hour ago by
lieven.sterck
11k • written 12 hours ago by
jaqx008
▴ 90
1
vote
1
reply
87
views
differential expression analysis
CRITERIA
DEGS
THRESOLD
updated 13 hours ago by
Mensur Dlakic
★ 10k • written 17 hours ago by
au.rinki.bio
▴ 10
21
votes
4
replies
2.2k
views
Tutorial:
A simple tutorial for a complex ComplexHeatmap
complexheatmap
clustering
arthritis
pam
Tutorial
updated 9 hours ago by
Rob
▴ 40 • written 11 months ago by
Kevin Blighe
72k
3
votes
2
replies
188
views
SNP's datasets and pedigreees
SNP
data
inference
haplotype
pedigrees
base
14 hours ago by
S. Roa
• 0
0
votes
3
replies
184
views
Arlequin problem (different loci number among different genotypes)
SNP
updated 15 hours ago by
lieven.sterck
11k • written 26 days ago by
wangh920
• 0
4
votes
1
reply
2.8k
views
Tool:
Clustering of short peptide sequences
peptide
clustering
phage display
Tool
updated 15 hours ago by
xiaoyuzhangh
• 0 • written 5.5 years ago by
jockbanan
▴ 390
2
votes
3
replies
95
views
X amino acid in ensembl
aminoacid
alignment
ensembl
protein
sequence
updated 13 hours ago by
Mensur Dlakic
★ 10k • written 17 hours ago by
Jason
• 0
0
votes
0
replies
30
views
Contradiction in Harzard ratio and Log fold change
Foldchange
Cancer
HR
HarzardRatio
LogFC
16 hours ago by
Mran
• 0
0
votes
11
replies
363
views
File conversion from coordinates to genes
conversion
updated 15 hours ago by
Alex Reynolds
32k • written 16 days ago by
storm1907
• 0
2
votes
1
reply
2.0k
views
Phylobayes, Tracecomp Output Interpretation
updated 17 hours ago by
Carolina Alejandra
• 0 • written 7.3 years ago by
5heikki
9.7k
0
votes
0
replies
34
views
List of codon numbers in a panel
browser
codon
list
ucsc
genome
19 hours ago by
ines
• 0
0
votes
0
replies
29
views
SECAPR issue
SECAPR
reads
trimmomatic
pipeline
alignement
19 hours ago by
Begonia_pavonina
▴ 20
1
vote
1
reply
65
views
bulk RNA-seq contamination, lung ambient RNA
mouse
bulkRNAseq
contamination
RNAseq
analysis
updated 17 hours ago by
jared.andrews07
9.3k • written 19 hours ago by
Lpak
• 0
5
votes
10
replies
163
views
6 follow
Multiqc raises the "cannot import name 'gcd' from 'fractions'" error
multiqc
linux
rna-sq
17 hours ago by
sabbirakhand25
• 0
0
votes
1
reply
66
views
Multiply BED scores by a normalization factor in precise intervals in Granges object.
R
19 hours ago by
massimofaggiani
• 0
5
votes
4
replies
95
views
Which Fasta file and GTF file to use in STAR alignment
STAR
ENSEMBL
GTF
fa
19 hours ago by
peru
• 0
0
votes
0
replies
157
views
how to combined peak score or other quantitative indicator when identify TF target gene
ChIP-Seq
20 hours ago by
shangguandong1996
▴ 10
2
votes
2
replies
94
views
How to set variant FILTER in a VCF file based on overlap with regions in a BED file
annotation
bed
vcf
21 hours ago by
William
★ 4.8k
7
votes
7
replies
359
views
6 follow
Forum:
R - A bioinformatic analysis programming language for NGS
bioinformatics
R
BI
NGS
6 hours ago by
guoxuantong
▴ 120
3
votes
6
replies
117
views
Meaning letters in TCGA sample barcode field
GDC
Barcode
TCGA
1 day ago by
sumitguptabt
• 0
1
vote
0
replies
44
views
Methylation frequency + and - strand
methylation
Bismark
1 day ago by
Palgrave
▴ 30
0
votes
0
replies
35
views
Error : Fail to open file file.vcf for normalization with vt
normalization
vt
vcf
1 day ago by
Sar
• 0
0
votes
2
replies
88
views
Salmon Script Troubleshooting for RNA Seq Data
NextGenerationSequencing
RNAseq
Bash
Slurm
Salmon
updated 1 day ago by
ATpoint
48k • written 1 day ago by
makylakb
• 0
0
votes
0
replies
56
views
Adjusting for the effect of other variables for DGEA in EdgeR
RNASeq
edgeR
DGEA
1 day ago by
emilien.hourquet
• 0
1
vote
1
reply
63
views
Normalisation before edgeR for RNA-Seq
rna-seq
edgeR
updated 1 day ago by
ATpoint
48k • written 1 day ago by
ZheFrench
▴ 320
0
votes
1
reply
55
views
MASURCA output
masurca
updated 19 hours ago by
Carambakaracho
★ 2.4k • written 1 day ago by
kilcdincer
▴ 10
0
votes
3
replies
77
views
short length amino acids
short
amino
acids
alignment
length
updated 23 hours ago by
GenoMax
99k • written 1 day ago by
desptsp
• 0
0
votes
1
reply
240
views
comparing enriched GO terms between species
RNA-Seq
go
annotation
updated 1 day ago by
babalyigit
• 0 • written 9 months ago by
martinaweil
• 0
2
votes
4
replies
217
views
MASURCA error for multiple entries
masurca
updated 23 hours ago by
Kevin Blighe
72k • written 6 days ago by
kilcdincer
▴ 10
4
votes
11
replies
178
views
Download all Bacteria accession list from NCBI
number
accession
NCBI
20 hours ago by
K.Gee
▴ 40
0
votes
0
replies
53
views
Correlation test based on position sliding window for multiple variables
statistics
R
corr.test
1 day ago by
User000
▴ 440
0
votes
1
reply
56
views
Precision of variant calling (INDELs)
INDELs
hap.py
updated 23 hours ago by
desouzareis.r
▴ 220 • written 1 day ago by
esimonova.me
▴ 10
0
votes
0
replies
40
views
DEG list turn into keggscape
Cytoscape
RNA-Sequencing
1 day ago by
ashwing.kofficial
• 0
0
votes
0
replies
70
views
How can I slicing to RS4 type in rpy2?
rpy2
slicing
rs4
rpy
1 day ago by
dxodnd
• 0
0
votes
0
replies
73
views
Trycycler Assembly_Issue in Flye and MInimap2
Flye
minimap2
Trycycler
1 day ago by
Shiv_2
• 0
0
votes
1
reply
92
views
Combining results tables to plot automatecally
DESeq2
updated 1 day ago by
swbarnes2
9.7k • written 1 day ago by
hydrobeanz
• 0
90,481 results • Page
1 of 1810
Recent Votes
C: Chicken/Non canonical animal sequencing depth and read length
C: Chicken/Non canonical animal sequencing depth and read length
A: Whole Exome CNV tools
Comment: Extract chromosome 1 - 22 fasta file
Answer: GSEA for RNA_seq dataset
Comment: Meaning letters in TCGA sample barcode field
Comment: bulk RNA-seq contamination, lung ambient RNA
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Recent Replies
Comment: Snakemake with bwa_mem2_mem unable to open the ref file and doesn' t work
by
aka
• 0
Hi, Thank you for your help! For the 1st it's a mistake sorry I change it and it's still the same. For the 2nd yes I am sure because wit…
Answer: R command worked yesterday, but stalls today?
by
ATpoint
48k
Make it simple and download that RDS file from command line with something like `wget`, this will give a status bar. Once downloaded just r…
Comment: Understanding GATK evaluation metrics
by
Nicolas Rosewick
9.3k
Did you use the right exome kit interval bed file in the different GATK tools ? Did you try to filter with VQSR and recalculate TiTV ?
Comment: Can't count features with featurecount
by
Michael Dondrup
48k
-M and -O add multi-mapping reads and reads that are map to genes that overlap other genes. In case you get higher rates using them, you kn…
Comment: How can I Extract Transposable element from a new genome assembly?
by
lieven.sterck
11k
Why would you not start from scratch with repeatmasker? It will be the most accurate way to mask repeats in your genome. Simply mapping …
Answer: Snakemake with bwa_mem2_mem unable to open the ref file and doesn' t work
by
colindaven
★ 2.7k
This is a pretty common task. Why not try out the snakemake pipeline put together by the Snakemake authors? Why reinvent the wheel ? htt…
Comment: Question about methods monitoring the change from dsDNA/RNA to ssRNA/DNA
by
ATpoint
48k
I think you should ask this at a more suitable community that is more wetlab-orientated, such as a suitable SubReddit or ResearchGate. It i…
Comment: Snakemake with bwa_mem2_mem unable to open the ref file and doesn' t work
by
lmlukoseviciute
▴ 10
Hello, a few things I see here, not sure if they will solve your problem. 1st your both inputs are the same R1 read, there is no R2. 2nd…
Comment: SHAPEIT2 - ERROR "BAD RECOMBINATION RATE"
by
4galaxy77
▴ 400
Btw, shapeit2 is quite outdated now. shapeit4 is much more recent / faster / accurate https://anaconda.org/bioconda/shapeit4
Answer: Extract chromosome 1 - 22 fasta file
by
lmlukoseviciute
▴ 10
Hello, you I am not really sure if you want to see only chromosome names or the sequences it self. But as of the example you can try. `zca…
Comment: Extract chromosome 1 - 22 fasta file
by
shenwei356
5.8k
seqkit grep -i -r -p '^chr[\dXY]+$' h19.fa.gz -o result.fa.gz
Comment: GATK GenomicsDBImport for consolidate GVCF
by
Pierre Lindenbaum
135k
in GATK the option `-L` is designed to define an interval (a bed file, a interval_file, etc..) not , as far as I can see, a list of of "fra…
Comment: What is gnomAD allele frequency
by
Eric Wang
▴ 40
Thank you for your answer.
Comment: R - A bioinformatic analysis programming language for NGS
by
guoxuantong
▴ 120
Thank you so much for informing me. I've removed the reference numbers in the body of the article, and I find the platform seems to be unab…
Comment: Finding all instances of a recurring motif in a repeat protein
by
NeuralCode
• 0
Thanks so much! HMMer is great. Now pulling out hundreds of instances of this domain for my big alignment.
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