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Recent Replies
Answer: WGCNA -RNAseq data- strong correlation with TIN
by
cera.fisher
▴
10
How many samples do you have?
How wide is the range in the TIN among your samples?
If you have enough samples, maybe you can afford…
Comment: Tools to translate from proteome to genome and understand genomic data
by
giammafer
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0
Yes, I think that for the purpose of my project I can start from proteins going straight to the genome.
I will try your suggestion.
Than…
Comment: Unable to download R package
by
Kira
•
0
Thank you very much for your help, problem solved.
I deleted gdc-client .exe and download TCGAbiolinks again, it works XD !!
Comment: Algorithm to remove batch effects
by
ATpoint
49k
I am pretty sure SeuratWrappers has fastMNN included.
Comment: Unable to download R package
by
Kira
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Erm........, so how can I solve this gdc-client error?
Comment: WGCNA -RNAseq data- strong correlation with TIN
by
andres.firrincieli
★
1.2k
how many genes do your have in the TIN module?
edit: I see know... TIN is not a module but the trait of interest. If TIN is the `Transcrip…
Comment: Unable to download R package
by
GenoMax
101k
This does not appear to be a problem with BiocManager now. Why are you getting an error about `gdc-client`? Is that what you are trying to …
Comment: Unable to download R package
by
Kira
•
0
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install(version = "3.12…
Comment: How to produce a heatmap by keeping the original data and a log color scale?
by
cpad0112
15k
Please do not post your comments as answer. In addition, if a member's post resolved your query, accept that as a answer to close the post …
Comment: WGCNA -RNAseq data- strong correlation with TIN
by
Geor
•
0
Thanks Andres! In my case the the most significant values I see with TIN and the 1st biggest module(8k genes), followed by 2nd biggest modu…
Answer: Unable to download R package
by
GenoMax
101k
Use directions in this answer to install `BiocManager` : https://www.biostars.org/p/9467837/#9467842
Comment: Algorithm to remove batch effects
by
asumani
▴
70
How can I integrate fastMNN for Seurat? Is it a good idea to do the analysis in SCE object until batch correction, and then convert it to S…
Comment: Generating consensus sequence from bam file
by
a1ultima
▴
760
Hey @genomax , it worked after I just put the ref.fa after the -Oz flag
Answer: How to produce a heatmap by keeping the original data and a log color scale?
by
anikcropscience
▴
40
Anyways, the problem is solved by using breaks. Thank you.
Comment: Bioinformatics tutor good in Python
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shweta.johari13
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30
Good evening Sir, I have already emailed you.
Looking forward to your reply.
-Shweta Johari
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