updated 24 days ago by
Ram
38k
•
written 10.1 years ago by
Cyriac Kandoth
5.9k
30
votes
14
replies
15k
views
8 follow
33
votes
16
replies
15k
views
10 follow
Tutorial:
Machine Learning For Cancer Classification - Part 3 - Predicting With A Random Forest Classifier
updated 18 days ago by
Ram
38k
•
written 9.3 years ago by
Obi Griffith
20k
81
votes
21
replies
14k
views
16 follow
Tutorial:
Gene Set Enrichment Analysis
updated 10 days ago by
Ram
38k
•
written 2.4 years ago by
Hamid Ghaedi
2.9k
76
votes
13
replies
14k
views
12 follow
Tutorial:
Exploring cancer mutation data portals
updated 17 months ago by
Ram
38k
•
written 8.8 years ago by
Malachi Griffith
19k
53
votes
5
replies
14k
views
6 follow
updated 5 months ago by
Ram
38k
•
written 9.3 years ago by
Nicholas Spies
★
1.2k
73
votes
14
replies
14k
views
15 follow
Tutorial:
List Of Bioinformatics Books
15
votes
5
replies
14k
views
updated 6.6 years ago by
mia1260
•
0
•
written 6.8 years ago by
Obi Griffith
20k
16
votes
11
replies
13k
views
7 follow
10
votes
7
replies
13k
views
updated 5.5 years ago by
Alex Reynolds
34k
•
written 5.5 years ago by
Kevin Blighe
84k
20
votes
4
replies
13k
views
updated 24 days ago by
Ram
38k
•
written 10.0 years ago by
Obi Griffith
20k
16
votes
7
replies
12k
views
updated 5 days ago by
Ram
38k
•
written 3.8 years ago by
atakanekiz
▴
310
16
votes
0
replies
12k
views
updated 27 days ago by
Ram
38k
•
written 10.9 years ago by
David Langenberger
9.9k
63
votes
13
replies
12k
views
11 follow
47
votes
19
replies
12k
views
8 follow
updated 9 weeks ago by
Ram
38k
•
written 10.1 years ago by
Istvan Albert
96k
8
votes
19
replies
12k
views
9 follow
updated 10 days ago by
Ram
38k
•
written 8.3 years ago by
Lesley Sitter
▴
580
44
votes
3
replies
12k
views
7.0 years ago by
Sinji
★
3.2k
59
votes
15
replies
11k
views
4.4 years ago by
finswimmer
15k
64
votes
26
replies
11k
views
7 follow
Tutorial:
Parallel processing in R
updated 5 days ago by
Ram
38k
•
written 5.5 years ago by
Kevin Blighe
84k
12
votes
20
replies
11k
views
10 follow
updated 5 days ago by
Ram
38k
•
written 3.8 years ago by
jared.andrews07
★
14k
43
votes
6
replies
11k
views
17
votes
3
replies
11k
views
Tutorial:
bedGraphToBigWig Tutorial and Report
updated 8 months ago by
Ram
38k
•
written 7.1 years ago by
Shicheng Guo
★
9.3k
7
votes
2
replies
11k
views
15
votes
5
replies
11k
views
6 follow
Tutorial:
Easy way to do GO enrichment in R
64
votes
26
replies
11k
views
11 follow
updated 6 days ago by
Ram
38k
•
written 4.0 years ago by
finswimmer
15k
48
votes
7
replies
11k
views
7 follow
Tutorial:
Genome Assembly Review Papers
updated 25 days ago by
Ram
38k
•
written 10.6 years ago by
Istvan Albert
96k
40
votes
9
replies
10k
views
10 follow
70
votes
5
replies
10k
views
8 follow
Tutorial:
Bioinformatics For Metagenomic Analyses
updated 11 months ago by
Ram
38k
•
written 9.0 years ago by
umer.zeeshan.ijaz
★
1.8k
30
votes
8
replies
10k
views
7 follow
8
votes
9
replies
10k
views
updated 13 days ago by
Ram
38k
•
written 8.9 years ago by
umer.zeeshan.ijaz
★
1.8k
18
votes
2
replies
9.5k
views
updated 12 months ago by
Ram
38k
•
written 8.4 years ago by
Nowlan Freese
▴
860
3
votes
13
replies
9.4k
views
37
votes
8
replies
9.2k
views
10 follow
Tutorial:
Methylation Analysis Tutorial in R_part1
updated 10 days ago by
Ram
38k
•
written 2.5 years ago by
Hamid Ghaedi
2.9k
9
votes
4
replies
8.9k
views
updated 5 days ago by
Ram
38k
•
written 3.7 years ago by
colindaven
4.5k
60
votes
6
replies
8.9k
views
14
votes
0
replies
8.8k
views
31
votes
6
replies
8.6k
views
updated 5 days ago by
Ram
38k
•
written 2.8 years ago by
Kevin Blighe
84k
19
votes
4
replies
8.4k
views
updated 24 days ago by
Ram
38k
•
written 10.0 years ago by
Istvan Albert
96k
16
votes
5
replies
8.4k
views
updated 25 days ago by
Ram
38k
•
written 10.5 years ago by
Obi Griffith
20k
20
votes
0
replies
8.4k
views
Tutorial:
Metagenomics Review Papers
updated 25 days ago by
Ram
38k
•
written 10.6 years ago by
Istvan Albert
96k
9
votes
23
replies
8.3k
views
7 follow
20
votes
4
replies
8.1k
views
9
votes
0
replies
8.0k
views
Tutorial:
Installing And Running Ncbi Blast
updated 4 weeks ago by
Ram
38k
•
written 11.0 years ago by
MSU course 2011
▴
540
14
votes
0
replies
7.9k
views
24
votes
15
replies
7.9k
views
8 follow
0
votes
0
replies
7.9k
views
81
votes
8
replies
7.8k
views
6 follow
3
votes
3
replies
7.8k
views
8
votes
7
replies
7.7k
views
2
votes
2
replies
7.6k
views
6
votes
1
reply
7.6k
views
updated 27 days ago by
Ram
38k
•
written 10.8 years ago by
Istvan Albert
96k
Recent Votes
Recent Locations •
All
Greece, just now
Germany, just now
Austria, just now
United States, just now
South Korea, just now
Kenya, 1 minute ago
United Kingdom, 2 minutes ago
Recent Awards •
All
Scholar to
colindaven
4.5k
Teacher to
Matthias Zepper
3.3k
Popular Question to
mohammedtoufiq91
▴
210
Popular Question to
MatthewP
★
1.2k
Popular Question to
electronsource75
▴
10
Popular Question to
anasjamshed
▴
120
Popular Question to
Kevin Blighe
84k
Recent Replies
Answer: Where do find virulence gene information in a gff/gtf file?
by
oschwengers
▴
80
You could try Bakta to annotate your bacterial genome. Internally, it uses AMRFinderPlus and VFDB and potential hits are marked in GFF3 col…
Answer: GIAB Truth Set
by
Jeremy Leipzig
21k
The truthset is an amalgam or consensus of at least 3 different sequencing technologies (Complete Genomics, 10X, Illumina). I'm not sure co…
Comment: split fasta file to train deep learning model
by
Mensur Dlakic
★
22k
This isn't what you are asking, but I will give your my opinion just in case.
If you have a single genome, doing a random 80:20 split as y…
Comment: split fasta file to train deep learning model
by
GenoMax
126k
`reformat.sh` from BBTools as well.
Sampling parameters:
reads=-1 Set to a positive number to only process thi…
Comment: Calculate RPKM
by
Chris
▴
70
I got gene_length and counts matrix with the same number of row with your suggestion.
y <-DGEList(counts=your_data_frame,genes=data.f…
Comment: Handling single-sample VCF after haplotypecaller
by
Y.H.P
•
0
Does it mean that before going through combining and final genotyping, all procedures regarding handling VCF files (ex: hard-filtering, BQS…
Answer: FastQ file not recognized by hisat2 allignment
by
Mensur Dlakic
★
22k
> No such variable: fastq1
Error messages don't come any clearer than this. Your script is expecting a variable named fastq1 to be used …
Comment: Bowtie2 parameters for best alignment
by
kalavattam
▴
90
It's not necessarily a question of "better" or not. When you perform adapter/quality trimming of reads, you're sidestepping a large part of…
Comment: msigdbr returns the same genesets for mouse as in for human,
by
e.r.zakiev
▴
30
hello Igor, thanks for the great package. How do I query for mouse sets?
`msigdbr::msigdbr(species = "Mus musculus", category = "M8")`
r…
Comment: FeatureCounts >edgeR > GO
by
Pegasus
▴
80
Thank you ATpoint, I modified the main post for more clarification;
1. "When using edgeR and Deseq2 to generate a CSV file for differenti…
Comment: just one plot appears in the shiny application not all
by
bkleiboeker
▴
310
There's nowhere near enough information/code here for us to know why only one of your many plots aren't showing up. Can you provide a repro…
Comment: Human Population Reference Genomes (+Neanderthal?)
by
emm008
•
0
Thank you for the help! I am unfortunately tied to fasta and blast because I am trying to replicate someone else's methods to sus out the m…
Answer: split fasta file to train deep learning model
by
Matthias Zepper
3.3k
[seqkit sample][1] should be what you a looking for.
[1]: https://bioinf.shenwei.me/seqkit/usage/#sample
Traffic: 2218 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6