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0.60625 is 97/160 so if you have 80 individuals in your VCF that's an internal allele frequency, not gnomAD
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Yes, I was confused as well. I think the same. Maybe Annovar uses some other resources besides gnomad, but it does not make sense. Also, I …
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Thank you so much, I decided to move forward as you suggested. Initially, I thought using the most up-to-date databases and positions would…
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Something in `AGAT` should work: https://agat.readthedocs.io/en/latest/?badge=latest
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> My problem has been with trying to loop the process.
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thank you. This is exactly what I was looking for
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This is not the most elegant solution, but it should work with previous suggestions.
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I figured out how to make it work. The bams have to be comma separated not just by space:
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Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
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