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17 results • Page
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69
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Tutorial:
How To Ask Good Questions On Technical And Scientific Forums
tutorial
Tutorial
written 7.8 years ago by
Eric Normandeau
11k
5
votes
0
replies
154
views
Tutorial:
Pipes in R: An introduction and some advanced tips and tricks.
R
12 days ago by
rpolicastro
5.1k
224
votes
175
replies
67k
views
72 follow
Tutorial:
Survival analysis of TCGA patients integrating gene expression (RNASeq) data
RNA-Seq
TCGA
Survival
Tutorial
updated 16 days ago by
Ram
32k • written 5.7 years ago by
TriS
★ 4.3k
9
votes
0
replies
225
views
Tutorial:
Greatly speed up conda by using mamba
software
17 days ago by
rpolicastro
5.1k
6
votes
0
replies
122
views
Tutorial:
data.frames in R: How vectorization can save you time and heartache
R
12 days ago by
rpolicastro
5.1k
7
votes
2
replies
168
views
Tutorial:
Installing an updated R version (>=4.0) using conda
R
software error
Tutorial
updated 21 days ago by
dariober
12k • written 21 days ago by
Nitin Narwade
▴ 480
7
votes
1
reply
134
views
Tutorial:
Split a 'linearised' (flattened) FASTA sequence into multi-line using AWK
awk
fasta
Tutorial
23 days ago by
Kevin Blighe
72k
10
votes
6
replies
874
views
Tutorial:
Finding the significance of the overlap between 2 or more gene sets using simulation in R.
R
tidyverse
gene
Tutorial
updated 23 days ago by
svlachavas
▴ 730 • written 7 months ago by
rpolicastro
5.1k
12
votes
2
replies
215
views
Tutorial:
Factors in R - How do they work, and how did I break my data?
R
Tutorial
12 days ago by
rpolicastro
5.1k
143
votes
34
replies
49k
views
31 follow
Tutorial:
Tools For Metagenomic Data Analysis
metagenomics
next-gen
tutorial
Tutorial
updated 25 days ago by
juanjo75es
▴ 90 • written 8.4 years ago by
vijay
★ 1.6k
4
votes
2
replies
903
views
Tutorial:
*FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
R
linux
bioinformatics
Tutorial
updated 27 days ago by
jessicapnoya
• 0 • written 9 weeks ago by
giessen_garten
▴ 40
4
votes
0
replies
550
views
Tutorial:
Building mosdepth on macOS
mosdepth
nim
Tutorial
7 days ago by
ATpoint
47k
39
votes
8
replies
2.4k
views
7 follow
Tutorial:
Gene Set Enrichment Analysis
microarray
RNA-Seq
Tutorial
enrichment
GSEA
1 day ago by
Hamid Ghaedi
★ 1.3k
17
votes
3
replies
3.1k
views
Tutorial:
Using EnrichedHeatmap for visualization of NGS experiments
enrichedheatmap
chip-seq
atac-seq
heatmap
Tutorial
6 days ago by
ATpoint
47k
8
votes
0
replies
567
views
Tutorial:
Long versus wide data for plotting genomics data in R.
R
tidyverse
ggplot2
Tutorial
data.table
12 days ago by
rpolicastro
5.1k
67
votes
68
replies
10k
views
16 follow
Tutorial:
Clustering of DAVID gene enrichment results from gene expression studies
enrichment
Tutorial
david
updated 10 days ago by
krushnach80
▴ 900 • written 3.1 years ago by
Kevin Blighe
72k
1
vote
0
replies
1.4k
views
Tutorial:
A short primer to pairwise alignment
pam
Tutorial
pairwise
blosum
blastp
alignment
updated 1 day ago by
Ram
32k • written 5.7 years ago by
Luke Crichton
▴ 370
17 results • Page
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Recent Votes
Answer: Creating reference genome for mapping and then selecting
Comment: Creating reference genome for mapping and then selecting
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Answer: Tool to find chromosome specific repeats
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Recent Replies
Answer: Expression of gene of interest across conditions in single-cell data
by
jared.andrews07
9.1k
Take a look at [dittoSeq](http://www.bioconductor.org/packages/release/bioc/vignettes/dittoSeq/inst/doc/dittoSeq.html) for viz options - it…
Comment: Extracting only tumor samples from Single cell RNASeq
by
jared.andrews07
9.1k
You need pre-defined variants for Vartrix. Typically it's used in conjuction with WGS/WES from bulk tissue to look for clonal variants in d…
Comment: Cell composition in each condition of single cell data
by
paria.alipour
▴ 20
Oh, I'm sorry. I already posted it in here the https://www.biostars.org/p/457243/#9464486. I've added the images
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
by
Quanyou
• 0
This seems OK when one gene generates only one transcirpt. But when one gene has multiple transcripts, these code would return a table wher…
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
by
Quanyou
• 0
This seems feasible. But I want to convert tens of thousands of transcript IDs. Could you tell me how can I make it through sequene search?
Answer: bbmap, mapq and uniquelly mapped reads filtering
by
GenoMax
99k
Many threads exist that show how to extract uniquely mapped reads. Here are a couple of examples:<br> https://www.biostars.org/p/276216/#27…
Comment: Cell composition in each condition of single cell data
by
rpolicastro
5.1k
The images seem to be missing from your post
Comment: Limma experiment design and making contrasts
by
kra277
• 0
Thank you very much for this. Much appreciated.
Comment: Limma experiment design and making contrasts
by
Kevin Blighe
72k
Hi, these follow the same principles as formulae used in regression modelling, so, you may want to focus on that (when searching). What lim…
Comment: Limma experiment design and making contrasts
by
kra277
• 0
That is very insightful. Thank you very much for the answer. Also, if I may ask, could you please point me to the articles for understandin…
Comment: Keep values from VCF file into Ensembl VEP annotation
by
brunobsouzaa
▴ 510
Thanks Man... I've wroten a simple awk command for this task! Everything is working fine.
Comment: Raw read processing using trimmomatic
by
boczniak767
▴ 740
Do you have exact command used by the author? I guess that not all details was presented in the paper. You can always ask the corresponding…
Comment: should stop codon be counted as part of CDS
by
sullis02
• 0
Your github page appears to live here now https://github.com/NBISweden/GAAS/blob/master/annotation/knowledge/gxf.md
Comment: How do I compare degree and betweenness centrality for different PPI networks?
by
Istvan Albert
87k
I am not all that knowledgeable of Cytoscapes features and scripting capabilities, but if it does not support that operation you can expo…
Comment: Creating reference genome for mapping and then selecting
by
Istvan Albert
87k
you would get the counts as you would get them in any other case, how do you know something maps to chromosome 1 of human genome? Because i…
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