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10 results • Page
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Tutorial:
Making Tile plots to show Synonymous Non-Synonymous mutation fraction
mutation
ggplotify
geom_tile
ggplot2
4 days ago by
rohitsatyam102
▴ 780
36
votes
14
replies
32k
views
14 follow
Tutorial:
installing samtools with conda - overcoming two common errors
samtools
conda
updated 22 days ago by
psschlogl
▴ 50 • written 3.3 years ago by
lavinia.gordon
▴ 160
0
votes
0
replies
236
views
Tutorial:
Using easyPubMed and scholar package to get all citations of your paper
scholar
easyPubMed
24 days ago by
rohitsatyam102
▴ 780
0
votes
4
replies
437
views
Tutorial:
Reverse pharmacology: how to predict drugs with genes or disease names?
drugs
drug-targets
genes
18 days ago by
Coremine Medical
▴ 20
90
votes
48
replies
31k
views
29 follow
Tutorial:
Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm
rna-seq
bioconductor
updated 26 days ago by
Ram
41k • written 10.1 years ago by
Irsan
★ 7.8k
48
votes
30
replies
9.3k
views
11 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 29 days ago by
ATpoint
78k • written 7.7 years ago by
Ram
41k
19
votes
13
replies
7.9k
views
10 follow
Tutorial:
Setting up Aspera Connect (ascp) on Linux and macOS
ascp
aspera
updated 27 days ago by
jude
• 0 • written 17 months ago by
ATpoint
78k
1
vote
0
replies
589
views
Tutorial:
List of Machine Learning-Based Scoring Function Papers
machine-learning
docking
papers
updated 22 days ago by
Ram
41k • written 8 months ago by
Milad
▴ 10
2
votes
0
replies
933
views
Tutorial:
Analysis of Smart-Seq3 data with kallisto-bustools
single-cell
kallisto
transcriptomics
smart-seq3
pipeline
updated 15 days ago by
Ali
• 0 • written 10 months ago by
firestar
★ 1.6k
5
votes
0
replies
4.2k
views
Tutorial:
Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates without alignment), mutate (create mutant genomes) and other miscellaneou…
bbmap
21 days ago by
GenoMax
136k
10 results • Page
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Recent Votes
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
Answer: How should I run ssgsea analysis ?
Comment: Parsing XML file from dbGaP
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
Comment: SPAdes error: finished abnormally, OS return value: 21
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
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Comment: featureCounts results: low rate of 'Successfully assigned alignments'
by
GenoMax
136k
> I run a blast with the sequences and most of them belongs to globin. Globin reads shown in your FastQC report are not going to add up to…
Comment: featureCounts results: low rate of 'Successfully assigned alignments'
by
kvn95ss
▴ 20
Almost all your samples have the over represented sequence, you can blast the top 10 recurring sequences and see what it could be.
Comment: How to deeply sequence long inserts
by
GenoMax
136k
Linked read kits have not been offered by 10x genomics from last 3-4 years so that is not an option. Illumina now offers a long read tech…
Comment: Viral genes not showing up in combined mouse+virus alignment
by
GenoMax
136k
Try taking out the additional header lines from the combined GTF file. `NC_005089.1` lines should be immediately followed by `NC_001846.1` …
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
by
Nitin Narwade
★ 1.5k
Hmmmmm, okay. In this case I could think of another workaround, instead of drawing line/marks, you can add another modality to your plot, …
Comment: featureCounts results: low rate of 'Successfully assigned alignments'
by
Hamtaro
▴ 10
I added the fastQC. What do you think of the possible cause I have proposed?
Comment: Problem in installing 'magick' R package
by
Jean-Karim Heriche
26k
This isn't a bioinformatics question. What do you mean by "install all the dependencies"? Did you read the error message? It's telling you …
Answer: Problem in installing 'magick' R package
by
DBScan
▴ 200
Have you read the error message? it tells you to try installing the Magick++ library: ``` Try installing: deb: libmagick++-dev (Debian, …
Answer: FVA on Sybil
by
Thomas
• 0
The first half of this vector should be your minimal fluxes per reaction and the second half your maximal fluxes per reaction. Thus this ve…
Comment: AttributeError: module 'collections' has no attribute 'Hashable'
by
jiyoung
▴ 20
Currently I am experiencing the same problem. Have you solved this?
Comment: Help doing differential expression analysis -experimental design and gProfiler T
by
rajabolacuan
• 0
Good Information Sir
Comment: Viral genes not showing up in combined mouse+virus alignment
by
cook.675
▴ 200
Hello I was curious to follow up and wonder if anyone knew why the viral genes are not showing up in the count matrix? I can't seem to solv…
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
CTLong
▴ 10
That makes sense. Thanks for the reminder.
Comment: bwa mem hangs after a few thousand reads
by
GenoMax
136k
Then you probably are best served by talking with your local sys admins to see where the issue may be.
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
GenoMax
136k
> even if tpe and tbo are trailing after adapter and quality trimming Priority/order of operations in coded in the program. Brian will be …
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