73
votes
18
replies
65k
views
12 follow
72
votes
60
replies
22k
views
16 follow
updated 6 days ago by
Mahmoud.Bassyouni
•
0
•
written 5.2 years ago by
Kevin Blighe
84k
13
votes
8
replies
1.9k
views
37
votes
8
replies
8.1k
views
10 follow
Tutorial:
Methylation Analysis Tutorial in R_part1
updated 6 days ago by
krushnach80
★
1.1k
•
written 2.2 years ago by
Hamid Ghaedi
2.8k
78
votes
41
replies
27k
views
24 follow
40
votes
9
replies
10k
views
10 follow
13 days ago by
Ahill
★
1.9k
17
votes
19
replies
6.2k
views
10 follow
Tutorial:
Create de novo repeat library
15 hours ago by
Juke34
7.4k
60
votes
6
replies
8.8k
views
7
votes
8
replies
2.9k
views
34
votes
4
replies
5.4k
views
Recent Votes
Recent Locations •
All
United States, just now
United States, 3 minutes ago
United States, 5 minutes ago
Japan, 12 minutes ago
United States, 14 minutes ago
Canada, 15 minutes ago
Australia, 17 minutes ago
Recent Awards •
All
Scholar to
Mensur Dlakic
★
21k
Popular Question to
colindaven
4.2k
Popular Question to
bala
•
0
Popular Question to
amitpande74
▴
20
Scholar to
Pierre Lindenbaum
151k
Teacher to
dare_devil
★
1.7k
Recent Replies
Comment: Transform Data into DNA picture
by
anasjamshed1994
▴
120
How can I annotate with mutations?
Comment: open-cravat: variant annotation tool
by
allison_cox
•
0
Hello,
I am trying to use open-cravat to add annotations to vcf files. I have set up a venv, activated, installed open-cravat, installed th…
Comment: Automated way to pull representative/RefSeq genome using full species name?
by
GenoMax
123k
Download using accession numbers : https://www.biostars.org/p/9544394/#9545941
Comment: Automated way to pull representative/RefSeq genome using full species name?
by
predeus
★
1.8k
Hi Mirian,
Thank you for your comment! I wanted to maybe avoid downloading all the bacterial species, and only download the assemblies an…
Comment: Transform Data into DNA picture
by
anasjamshed1994
▴
120
what does genotype mean in rsid? What does it indicate?![rsid][1]
[1]: /media/images/7638ed2f-7ed2-4cc0-8ce4-58ab0226
Comment: Any good tools for biological annotation of ChIP-seq broadpeak (H3K9me3, H3K27me
by
hiroyuki.kato.911
•
0
Thanks! I got it!
Answer: Inquiry related to processing multiple db file simulataneously
by
Pierre Lindenbaum
151k
how about calling `dbDisconnect` after `dbGetQuery` ?
Answer: Automated way to pull representative/RefSeq genome using full species name?
by
MirianT_NCBI
▴
340
Hi Alex,
You can use [NCBI Datasets][1]. `datasets` allows users to download genome and associated annotation files as a data package. I…
Comment: bedtools getfasta error: Error: malformed GFF entry at line 15. Coordinate detec
by
Pierre Lindenbaum
151k
but it's decoded AS a GFF/GTF file because bedtools can see columns 4 and 5 are integers. move columns 4 and 5 to columns 2 and 3 to create…
Comment: BioMart dropping and duplicating Ensembl IDs while retrieving corresponding gene
by
Matthias Zepper
2.4k
I already linked the MANE website above. Navigate to *Accessing MANE data* and download [this file][1]. It is an equivalence table and cont…
Comment: bedtools getfasta error: Error: malformed GFF entry at line 15. Coordinate detec
by
Simone
•
0
It's not a GFF file, it's a TSV annotation file, output from BUSCO. The annotations are coordinates for BUSCO genes. I've tried using BEDOP…
Comment: What are Supplementary Reads?
by
cmdcolin
★
2.5k
Large insertions or deletions can cause supplementary alignments to be created, even though it is still linear. But, minimap2 will try to a…
Comment: How to find rna strand direction before alignment?
by
swbarnes2
12k
OP said he didn't want to align. That script takes a bad and a bam as input.
Comment: GO enrichment analysis graphs after goseq: any easy solutions?
by
afsanarupa1
•
0
Please can you tell me details step by step how can these types of graphs be generated using output files from goseq as stated in trinity p…
Comment: What's Supplementary Reads?
by
Istvan Albert
96k
one concept the "linearity" of the alignment is important. A chimeric alignment is found to be "chimeric" if the entire read is represented…
Traffic: 1282 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6