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Tutorial: How To Ask Good Questions On Technical And Scientific Forums
tutorial Tutorial
written 7.8 years ago by 11k
5
votes
0
replies
154
views
Tutorial: Pipes in R: An introduction and some advanced tips and tricks.
R
12 days ago by rpolicastro 5.1k
224
votes
175
replies
67k
views
72 follow
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
RNA-Seq TCGA Survival Tutorial
updated 16 days ago by 32k • written 5.7 years ago by ★ 4.3k
9
votes
0
replies
225
views
Tutorial: Greatly speed up conda by using mamba
software
17 days ago by rpolicastro 5.1k
6
votes
0
replies
122
views
Tutorial: data.frames in R: How vectorization can save you time and heartache
R
12 days ago by rpolicastro 5.1k
7
votes
2
replies
168
views
Tutorial: Installing an updated R version (>=4.0) using conda
R software error Tutorial
updated 21 days ago by 12k • written 21 days ago by ▴ 480
7
votes
1
reply
134
views
Tutorial: Split a 'linearised' (flattened) FASTA sequence into multi-line using AWK
awk fasta Tutorial
23 days ago by Kevin Blighe 72k
10
votes
6
replies
874
views
Tutorial: Finding the significance of the overlap between 2 or more gene sets using simulation in R.
R tidyverse gene Tutorial
updated 23 days ago by ▴ 730 • written 7 months ago by 5.1k
12
votes
2
replies
215
views
Tutorial: Factors in R - How do they work, and how did I break my data?
R Tutorial
12 days ago by rpolicastro 5.1k
143
votes
34
replies
49k
views
31 follow
Tutorial: Tools For Metagenomic Data Analysis
metagenomics next-gen tutorial Tutorial
updated 25 days ago by ▴ 90 • written 8.4 years ago by ★ 1.6k
4
votes
2
replies
903
views
Tutorial: *FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
R linux bioinformatics Tutorial
updated 27 days ago by • 0 • written 9 weeks ago by ▴ 40
4
votes
0
replies
550
views
Tutorial: Building mosdepth on macOS
mosdepth nim Tutorial
7 days ago by ATpoint 47k
39
votes
8
replies
2.4k
views
7 follow
Tutorial: Gene Set Enrichment Analysis
microarray RNA-Seq Tutorial enrichment GSEA
1 day ago by Hamid Ghaedi ★ 1.3k
17
votes
3
replies
3.1k
views
Tutorial: Using EnrichedHeatmap for visualization of NGS experiments
enrichedheatmap chip-seq atac-seq heatmap Tutorial
6 days ago by ATpoint 47k
8
votes
0
replies
567
views
Tutorial: Long versus wide data for plotting genomics data in R.
R tidyverse ggplot2 Tutorial data.table
12 days ago by rpolicastro 5.1k
67
votes
68
replies
10k
views
16 follow
Tutorial: Clustering of DAVID gene enrichment results from gene expression studies
enrichment Tutorial david
updated 10 days ago by ▴ 900 • written 3.1 years ago by 72k
1
vote
0
replies
1.4k
views
Tutorial: A short primer to pairwise alignment
pam Tutorial pairwise blosum blastp alignment
updated 1 day ago by 32k • written 5.7 years ago by ▴ 370
17 results • Page 1 of 1
Recent Votes
Answer: Creating reference genome for mapping and then selecting
Comment: Creating reference genome for mapping and then selecting
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Answer: Tool to find chromosome specific repeats
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Recent Replies
Answer: Expression of gene of interest across conditions in single-cell data by jared.andrews07 9.1k
Take a look at [dittoSeq](http://www.bioconductor.org/packages/release/bioc/vignettes/dittoSeq/inst/doc/dittoSeq.html) for viz options - it…
Comment: Extracting only tumor samples from Single cell RNASeq by jared.andrews07 9.1k
You need pre-defined variants for Vartrix. Typically it's used in conjuction with WGS/WES from bulk tissue to look for clonal variants in d…
Comment: Cell composition in each condition of single cell data by paria.alipour ▴ 20
Oh, I'm sorry. I already posted it in here the https://www.biostars.org/p/457243/#9464486. I've added the images
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens by Quanyou • 0
This seems OK when one gene generates only one transcirpt. But when one gene has multiple transcripts, these code would return a table wher…
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens by Quanyou • 0
This seems feasible. But I want to convert tens of thousands of transcript IDs. Could you tell me how can I make it through sequene search?
Answer: bbmap, mapq and uniquelly mapped reads filtering by GenoMax 99k
Many threads exist that show how to extract uniquely mapped reads. Here are a couple of examples:<br> https://www.biostars.org/p/276216/#27…
Comment: Cell composition in each condition of single cell data by rpolicastro 5.1k
The images seem to be missing from your post
Comment: Limma experiment design and making contrasts by kra277 • 0
Thank you very much for this. Much appreciated.
Comment: Limma experiment design and making contrasts by Kevin Blighe 72k
Hi, these follow the same principles as formulae used in regression modelling, so, you may want to focus on that (when searching). What lim…
Comment: Limma experiment design and making contrasts by kra277 • 0
That is very insightful. Thank you very much for the answer. Also, if I may ask, could you please point me to the articles for understandin…
Comment: Keep values from VCF file into Ensembl VEP annotation by brunobsouzaa ▴ 510
Thanks Man... I've wroten a simple awk command for this task! Everything is working fine.
Comment: Raw read processing using trimmomatic by boczniak767 ▴ 740
Do you have exact command used by the author? I guess that not all details was presented in the paper. You can always ask the corresponding…
Comment: should stop codon be counted as part of CDS by sullis02 • 0
Your github page appears to live here now https://github.com/NBISweden/GAAS/blob/master/annotation/knowledge/gxf.md
Comment: How do I compare degree and betweenness centrality for different PPI networks? by Istvan Albert 87k
I am not all that knowledgeable of Cytoscapes features and scripting capabilities, but if it does not support that operation you can expo…
Comment: Creating reference genome for mapping and then selecting by Istvan Albert 87k
you would get the counts as you would get them in any other case, how do you know something maps to chromosome 1 of human genome? Because i…
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