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85
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23k
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Tutorial: Gene Set Enrichment Analysis
microarray enrichment RNA-Seq GSEA
updated 2 days ago by • 0 • written 3.5 years ago by 3.2k
49
votes
30
replies
11k
views
13 follow
Tutorial: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation meta how-to
updated 19 days ago by 100k • written 8.1 years ago by 43k
10
votes
6
replies
4.1k
views
Tutorial: CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation corlevelplot
updated 20 days ago by 43k • written 6.2 years ago by 87k
0
votes
0
replies
191
views
Tutorial: Parsing HMMER output
HMMER
updated 25 days ago by 141k • written 25 days ago by ▴ 140
34
votes
16
replies
20k
views
14 follow
Tutorial: TCGA UUIDS to TCGA barcode (SampleID) in R
next-gen GDC R TCGA
updated 28 days ago by ▴ 30 • written 7.5 years ago by ▴ 310
98
votes
106
replies
46k
views
26 follow
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000genomes PLINK PCA
updated 8 days ago by ▴ 20 • written 5.6 years ago by 87k
6 results • Page 1 of 1
Recent Votes
Comment: Integration of transcriptomics and proteomics: difficult matching names
Comment: Integration of transcriptomics and proteomics: difficult matching names
A: How to filter mutant allele frequency in Variant Effect Predictor (VEP)?
Answer: Rename multiple fastq.gz files
Comment: VCF to human friendly form?
Comment: Integration of transcriptomics and proteomics: difficult matchin names
BRAKER3 genome annotation
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Comment: Rename multiple fastq.gz files by shenwei356 8.4k
I just provide another solution using [brename](https://www.biostars.org/p/9487877/) ([download](https://github.com/shenwei356/brename/rele…
Comment: How to filter columns in a raw sparse matrix in R by bgbs • 0
Hi, it worked, thank you so much!
Comment: Prediction tools summary - zero values by Дана • 0
Hello, Lucas. Would you be so kind to share the link or id of your Schizophrenia vcf dataset? I am a student in masters degree and I am int…
Comment: GSEA analysis in R by sansan_96 ▴ 80
One example: ``` ### ego3 <- gseGO(geneList = geneList, OrgDb = org.Hs.eg.db, ont = "CC", …
Comment: How to filter columns in a raw sparse matrix in R by bk11 ★ 2.3k
You can do this- good_cells <-c(all_good_cells_rhemac10$V1) combined_rhemac10_count_matrix_good_cells <- combined_rhemac10_count_m…
Comment: Integration of transcriptomics and proteomics: difficult matching names by ntsopoul ▴ 60
you are right! Excel just did not find it...
Answer: Integration of transcriptomics and proteomics: difficult matching names by ntsopoul ▴ 60
I found a good solution but it is really cumbersome. I use UniProt.ws to derive unique gene names (readable names) and also ambiguous name…
Comment: Merging Outputs from plink --assoc and --hardy to Produce Table by Koketso • 0
Thank you so much. How about calculating allelic odds ratios? Which plink/R command can I use for that?
Comment: Integration of transcriptomics and proteomics: difficult matching names by ATpoint 81k
For such analysis I always first translate everything to Ensembl Gene IDs (biomaRt is a good help here) and then I do the matching with thi…
Comment: Rename multiple fastq.gz files by bk11 ★ 2.3k
Of course! If it worked, accept the answer.
Comment: Integration of transcriptomics and proteomics: difficult matching names by GenoMax 141k
I can see this in the list GI:2387631 Nup42 O Gene nucleoporin 42 10.72 5 24369961 24389011 + AA867018|AB067574|AI426644|AK077066|AK07…
Comment: Rename multiple fastq.gz files by Jérémie • 0
Sorry, I misunderstood. Thank you so much for this.
Comment: Integration of transcriptomics and proteomics: difficult matching names by sansan_96 ▴ 80
Hello, This conversion tool has been useful to me, maybe it can help you: https://biit.cs.ut.ee/gprofiler/convert
Comment: BRAKER3 genome annotation by sansan_96 ▴ 80
Perhaps eggNOG-MAPPER can be useful for functional annotation: 1. https://academic.oup.com/nar/article/47/D1/D309/5173662 2. http://eggnog…
Comment: BRAKER3 genome annotation by Buffo ★ 2.4k
I suggest searching for the difference between structural annotation (identifying the coordinates of the ORFs in a sequence) and functional…
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