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Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
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Tutorial:
DNA Methylation: Sequencing Techniques
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Tutorial:
Gene Set Enrichment Analysis
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Michael
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This seems like a model case for why we need better sustainable bioinformatics data and services. I don't know the exact background behind …
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Art1ess
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this is names.dmp:![names.dmp][1]
and nodes.dmp![nodes.dmp][2]
[1]: /media/images/33cc9a8b-4818-48b4-913d-1c2b2185
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see also : https://www.biostars.org/p/9537698/ ; https://www.biostars.org/p/9464312/ ; https://www.biostars.org/p/417123/
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
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what's the gray section ? it's the read you want ? do you only want the reads that end at the splice event (single point location) ?
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yes if there is more than one sample genotyped.
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Is it typical to observe such a profile in the context of diploid organism ?
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Yes you can use ggplot2 to create your own plots from a table of results from a differential methylation analysis. You just need to adapt a…
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This forum is not dedicated to this type of request, there are many online tutorials for creating heatmaps accessible with simple internet …
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Download the CPC2 tool supported by python 3 from here [https://github.com/gao-lab/CPC2_standalone/releases/tag/v1.0.1][1].
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let me know the scope and scale of the request (e.g. I need to do this for every record in Pubmed) and can help
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I was able to come up with a workaround using the requests library:
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Thanks for you answer! Actually I have already filtered my peak according to blacklist by bedtools. You mean it's meaningless to compare on…
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More than likely not since the database query seems to work for the redirected PMID but not the original.
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Blast showed PDB: 8J07_n9(human) as best template with 62.99%.
I also used swissmodel to model the protein and it showed:
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