updated 10 days ago by
psb7
▴
20
•
written 5.6 years ago by
Kevin Blighe
87k
98
votes
106
replies
46k
views
26 follow
85
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 18 hours ago by
Gordon
•
0
•
written 3.5 years ago by
Hamid Ghaedi
3.2k
49
votes
30
replies
11k
views
13 follow
updated 21 days ago by
Istvan Albert
100k
•
written 8.1 years ago by
Ram
43k
10
votes
6
replies
4.1k
views
updated 22 days ago by
Ram
43k
•
written 6.2 years ago by
Kevin Blighe
87k
0
votes
0
replies
62
views
Tutorial:
DNA Methylation: Sequencing Techniques
0
votes
0
replies
196
views
Tutorial:
Parsing HMMER output
Recent Votes
Recent Locations •
All
France, just now
United States, 1 minute ago
Belgium, 2 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 3 minutes ago
United States, 4 minutes ago
United States, 5 minutes ago
Canada, 6 minutes ago
Recent Awards •
All
Commentator to
GenoMax
141k
Centurion to
jkbonfield
★
1.2k
Popular Question to
yueli7
▴
250
Popular Question to
Randy H
▴
110
Popular Question to
ManuelDB
▴
80
Popular Question to
lefthandgergo
▴
10
Recent Replies
Comment: DEG analysis of RNA-seq data across multiple tissues and two conditions
by
BioinfGuru
★
1.7k
great guidance ... thank you
Comment: error in CPC2
by
Ram
43k
Ashok, what is CPC2? Please edit your post and add as much context as you can.
Comment: python file for cpc2
by
Ram
43k
Ashok - someone else had to (guess and) add context to your post. Please give us as much information as you can in the first place - we can…
Comment: python file for cpc2
by
Pierre Lindenbaum
161k
https://academic.oup.com/nar/article/45/W1/W12/3831091
> CPC2: a fast and accurate coding potential calculator based on sequence intrinsic…
Comment: error in CPC2
by
GenoMax
141k
Looks like you are running code that was written for `python v.2.x` but you probably have `python v.3.x` or a newer version than `python v.…
Comment: Per base sequence content failed miserably
by
GenoMax
141k
If this is 16S sequencing just follow the standard workflows like Qiime2.https://docs.qiime2.org/2024.2/tutorials/overview/
Comment: Out Of Disk Space With Picard Tools ?
by
kjngo
•
0
Thanks changing the tmp dir fixed the out of disk space error for me as well.
Answer: Downloaded pdb's on rcsb.org
by
GenoMax
141k
Download services for PDB are described on this page: https://www.rcsb.org/docs/programmatic-access/file-download-services
It could be as …
Answer: How to compare the quality of assemblies
by
shelkmike
★
1.2k
Since BUSCO results are almost identical but the assembly sizes differ significantly, I suppose that the difference between the assemblies …
Comment: differential gene expression analysis when not all samples have an untreated cou
by
nhaus
▴
300
Thank you very much for your answer, that was very helpful!
> Impossible to say. It depends on your data, particularly on how the donors …
Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
by
bk11
★
2.3k
This could be because they are probably merging two or more datasets. If you are merging two or more datasets, it will be very important th…
Answer: Problem with Mirdeep2 and Randfold output
by
otieno43
▴
30
I sorted this out by first removing white space in the first line of the reference genome. Then indexed, the ran the mapper.pl script follo…
Comment: Questions about a bug when transferring cram file to bam file
by
GenoMax
141k
Just to be certain, you are saying that if OP runs `samtools view` without the explicit reference it will be automatically downloaded from …
Comment: Questions about a bug when transferring cram file to bam file
by
jkbonfield
★
1.2k
That SQ M5 is chr1 in my copy of GRCh38 (Homo_sapiens.GRCh38_full_analysis_set_plus_decoy_hla.fa).
I'm assuming your hg38.fa is not the sa…
Comment: What happened to Tombo Re-squiggle
by
Ram
43k
Please do not add answers unless you're answering the top level question. Instead, use `Add Comment` or `Add Reply` as appropriate. I've mo…
Traffic: 2514 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6