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Tutorial:
Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm
rna-seq
bioconductor
updated 6 days ago by
Ram
40k • written 10.0 years ago by
Irsan
★ 7.7k
36
votes
5
replies
5.8k
views
Tutorial:
[Beginner] Introduction to bioinformatics file types
fastq
fasta
bed
SAM
updated 26 days ago by
gallardodiazmiriam
▴ 20 • written 8.2 years ago by
Luke Crichton
▴ 410
19
votes
13
replies
6.9k
views
9 follow
Tutorial:
Setting up Aspera Connect (ascp) on Linux and macOS
ascp
aspera
updated 4 days ago by
dariober
14k • written 15 months ago by
ATpoint
77k
18
votes
22
replies
8.1k
views
10 follow
Tutorial:
Create de novo repeat library
de-novo
repeat
annotation
updated 11 days ago by
evoecogen
▴ 20 • written 3.8 years ago by
Juke34
8.3k
4
votes
2
replies
2.3k
views
Tutorial:
Building mosdepth on macOS
nim
mosdepth
updated 28 days ago by
GenoMax
135k • written 3.4 years ago by
ATpoint
77k
1
vote
0
replies
190
views
Tutorial:
Managing your data (BAM, VCF, sample, phenotype) with RDF and SPARQL.
rdf
sparql
data-management
graph
updated 20 days ago by
Ram
40k • written 20 days ago by
Pierre Lindenbaum
157k
0
votes
1
reply
190
views
Tutorial:
TAPIS installation and usage
APA
Iso-seq
splicing
TAPIS
analysis
alternative
updated 21 days ago by
ATpoint
77k • written 22 days ago by
JC
▴ 30
7 results • Page
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Answer: 18S taxonomy assignment SILVA database formatting
C: Extract Reads From A Bam File That Fall Within A Given Region
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Imputation server failing to see samples in VCF files
Answer: Imputation server failing to see samples in VCF files
Need help to setup a PGS pipeline
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Recent Replies
Comment: Error in checkFullRank(modelMatrix) :
by
Basti
★ 1.7k
Apart from the response below, your design is strange. Why did you want to adjust for sample if you want to compare the expression between …
Comment: 18S taxonomy assignment SILVA database formatting
by
mbuenner
• 0
Changing it a bit to $ awk 'BEGIN{FS=";"; OFS=";"} /^>/ { print $4,$5,$6,$7,$8;$9;$10; next; }; { print; }' SILVA_132_taxonomy_assignment…
Answer: 18S taxonomy assignment SILVA database formatting
by
antonioggsousa
2.9k
I'm not an expert on `awk`, but I tried the following and it seems to work. Instead of using the original downloaded file, give your latest…
Comment: 18S taxonomy assignment SILVA database formatting
by
mbuenner
• 0
Thank you for editing the post and for your answer. Sadly, the linked formatted database does not contain Fungi, e.g. when I grep 'Fungi'…
Comment: pheatmap
by
Sara
▴ 30
Thank you for your comment, but it did not help!
Comment: 18S taxonomy assignment SILVA database formatting
by
antonioggsousa
2.9k
Please, whenever you need to add more information, just edit your original post and do not add answers below unless you found the solution …
Comment: Clustalo failing to complete multiple sequence alignments
by
saamhasan55
▴ 10
Hi, I know this is an old thread, but I am encountering a similar problem. I am trying to do an msa for the cds sequences of 5 bumblebee sp…
Comment: 18S taxonomy assignment SILVA database formatting
by
antonioggsousa
2.9k
Hi! Please share first with us an example how the data looks like, the command-line you're running and the problem that you're getting. If…
Answer: Finding sequences in unannotated genomes using reference coordinates
by
Prangan
▴ 20
I may have stumbled on a solution for this problem. What I wanted was the SNPs or mutations in the VCF to be incorporated in the reference.…
Comment: Differentially Expressed Genes between two conditions (scRNA, single GEO dataset
by
prietto
• 0
Thank you. I tried doing a pseudobulk analysis by doing the following: I have 9 patient ids in a column `Patient` in my metadata, and a co…
Comment: STAR Genome index Error
by
ATpoint
77k
How much memory does you machine have?
Comment: tximport error: vroom
by
ATpoint
77k
It's a problem with the import of the text files (quant.sf) I would say. I cannot really debug the error itself, but can you try ```r …
Comment: Converting from BED to SAF/GFF
by
ATpoint
77k
It's recommended to make a `Tool` post with usage examples that you can link to.
Answer: Error in checkFullRank(modelMatrix) :
by
ATpoint
77k
Sample is nested with condition and with itself, meaning that each sample is either condition1 or 2, but for a paired design each sample wo…
Comment: The Biostar Handbook. A bioinformatics e-book for beginners.
by
Michael
53k
Software carpentry provides some good [introductory courses in Linux, Git, Python and R][1]. We are using these materials in our local soft…
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