Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
3 results • Page
1 of 1
Sort: Votes
Rank
Views
Votes
Replies
276
votes
39
replies
164k
views
29 follow
Tutorial:
How to download raw sequence data from GEO/SRA
fastq
SRA
bam
GEO
updated 2 hours ago by
Ram
38k • written 8.6 years ago by
Obi Griffith
20k
5
votes
1
reply
1.7k
views
Tutorial:
A Guide to DNA Sequencing Techniques Part 1
dna
sanger
sequencing
pyrosequencing
updated 2 hours ago by
Ram
38k • written 7.7 years ago by
Luke Crichton
▴ 370
1
vote
0
replies
1.9k
views
Tutorial:
A short primer to pairwise alignment
pairwise-alignment
blastp
pam
blosum
updated 2 hours ago by
Ram
38k • written 7.7 years ago by
Luke Crichton
▴ 370
3 results • Page
1 of 1
Recent Votes
Answer: Cellranger sequencing
Answer: Using STAR for RNA seq-alignment.
Answer: Download Specific Individuals From Dbsnps?
blastn command line returning empty file
C: The Biostar Handbook. A bioinformatics e-book for beginners.
A: What Makes One Probability Distribution Better For Rna-Seq Than Another?
Answer: How to demultiplex single end - dual index run - NextSeq 500
Recent Locations •
All
United States,
3 minutes ago
United States,
8 minutes ago
Karachi,
11 minutes ago
Turkey,
12 minutes ago
United States,
13 minutes ago
United States,
15 minutes ago
Canada,
16 minutes ago
Recent Awards •
All
Scholar
to
GenoMax
127k
Popular Question
to
randalljellis
▴ 90
Popular Question
to
RvV
▴ 10
Popular Question
to
farzaneafzali
▴ 70
Scholar
to
MirianT_NCBI
▴ 460
Popular Question
to
Ap1438
▴ 50
Popular Question
to
genomes_and_MGEs
▴ 10
Recent Replies
Comment: chloroplast genome gaps
by
ugur
• 0
after alignment, it occurs in different sizes of gaps
Answer: Cellranger sequencing
by
ATpoint
70k
Not that I am aware of. Unlike methods such as salmon it does genome alignment and does not resolve the exact transcript expression composi…
Answer: Assembly at lineage level from shotgun data ?
by
Mensur Dlakic
★ 23k
The paper I list below is meant for improving the existing MAG assemblies. Yet the program will do what you want: if you give it a referenc…
Comment: Ortholog assembly and extraction
by
GenoMax
127k
Many seem to use `orthofinder` for this purpose. See if it is useful: https://github.com/davidemms/OrthoFinder
Answer: Python formatting when visualizing Primer3-py dimers
by
Wayne
★ 1.6k
Try this so you'll see that using [tabulate](https://github.com/astanin/python-tabulate) to print the dataframe causes it to respect the li…
Comment: Python formatting when visualizing Primer3-py dimers
by
bhumm
▴ 30
Glad I am making this more clear. The 'test1' in practice will be the 'primer name' to allow for tracking of other metrics (Tm, hairpin str…
Comment: Python formatting when visualizing Primer3-py dimers
by
Wayne
★ 1.6k
Starting to understand what you want and why. My question is now also then do you actually want the brackets? They seem to shift the rela…
Comment: Python formatting when visualizing Primer3-py dimers
by
bhumm
▴ 30
Hi Wayne, Thanks for the response. I have updated the code to be more representative of the toy example I have provided - apologies for an…
Comment: chloroplast genome gaps
by
Pierre Lindenbaum
153k
> , but the alignment results show different size gaps. what does it mean ?
Comment: lncTar
by
Ram
38k
I see that you added an answer to a 2 year old post. Don't do that - what you added was "I have this problem too" comment, not an answer. I…
Comment: LncTar error
by
Ram
38k
Do not add answers unless you're answering the top level question. Given that you've opened a new question, I'm deleting this post.
Comment: Samtools fixmate: whta's wrong with the terminal?
by
Ram
38k
Lol I started writing first, then discovered each issue as I was writing. All I saw was the `-0` but then oh my goodness, so many problems!
Comment: SKAT in R
by
Pierre Lindenbaum
153k
cross-posted: https://bioinformatics.stackexchange.com/questions/20772
Comment: Samtools fixmate: whta's wrong with the terminal?
by
Pierre Lindenbaum
153k
oh , Ram was too fast ! :-D
Answer: Samtools fixmate: whta's wrong with the terminal?
by
Pierre Lindenbaum
153k
1) your [standard][1] output is redirected to the terminal instead of a [file][2]. 2) there is no such option `-0` (zero) . your want …
Traffic: 1612 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6