276
votes
39
replies
164k
views
29 follow
5
votes
1
reply
1.7k
views
updated 2 hours ago by
Ram
38k
•
written 7.7 years ago by
Luke Crichton
▴
370
1
vote
0
replies
1.9k
views
Tutorial:
A short primer to pairwise alignment
updated 2 hours ago by
Ram
38k
•
written 7.7 years ago by
Luke Crichton
▴
370
Recent Votes
Recent Locations •
All
United States, 3 minutes ago
United States, 8 minutes ago
Karachi, 11 minutes ago
Turkey, 12 minutes ago
United States, 13 minutes ago
United States, 15 minutes ago
Canada, 16 minutes ago
Recent Awards •
All
Popular Question to
randalljellis
▴
90
Popular Question to
RvV
▴
10
Popular Question to
farzaneafzali
▴
70
Scholar to
MirianT_NCBI
▴
460
Popular Question to
Ap1438
▴
50
Popular Question to
genomes_and_MGEs
▴
10
Recent Replies
Answer: Cellranger sequencing
by
ATpoint
70k
Not that I am aware of. Unlike methods such as salmon it does genome alignment and does not resolve the exact transcript expression composi…
Answer: Assembly at lineage level from shotgun data ?
by
Mensur Dlakic
★
23k
The paper I list below is meant for improving the existing MAG assemblies. Yet the program will do what you want: if you give it a referenc…
Comment: Ortholog assembly and extraction
by
GenoMax
127k
Many seem to use `orthofinder` for this purpose. See if it is useful: https://github.com/davidemms/OrthoFinder
Answer: Python formatting when visualizing Primer3-py dimers
by
Wayne
★
1.6k
Try this so you'll see that using [tabulate](https://github.com/astanin/python-tabulate) to print the dataframe causes it to respect the li…
Comment: Python formatting when visualizing Primer3-py dimers
by
bhumm
▴
30
Glad I am making this more clear. The 'test1' in practice will be the 'primer name' to allow for tracking of other metrics (Tm, hairpin str…
Comment: Python formatting when visualizing Primer3-py dimers
by
Wayne
★
1.6k
Starting to understand what you want and why.
My question is now also then do you actually want the brackets? They seem to shift the rela…
Comment: Python formatting when visualizing Primer3-py dimers
by
bhumm
▴
30
Hi Wayne,
Thanks for the response. I have updated the code to be more representative of the toy example I have provided - apologies for an…
Comment: chloroplast genome gaps
by
Pierre Lindenbaum
153k
> , but the alignment results show different size gaps.
what does it mean ?
Comment: lncTar
by
Ram
38k
I see that you added an answer to a 2 year old post. Don't do that - what you added was "I have this problem too" comment, not an answer. I…
Comment: LncTar error
by
Ram
38k
Do not add answers unless you're answering the top level question. Given that you've opened a new question, I'm deleting this post.
Comment: Samtools fixmate: whta's wrong with the terminal?
by
Ram
38k
Lol I started writing first, then discovered each issue as I was writing. All I saw was the `-0` but then oh my goodness, so many problems!
Comment: SKAT in R
by
Pierre Lindenbaum
153k
cross-posted: https://bioinformatics.stackexchange.com/questions/20772
Comment: Samtools fixmate: whta's wrong with the terminal?
by
Pierre Lindenbaum
153k
oh , Ram was too fast ! :-D
Answer: Samtools fixmate: whta's wrong with the terminal?
by
Pierre Lindenbaum
153k
1) your [standard][1] output is redirected to the terminal instead of a [file][2].
2) there is no such option `-0` (zero) . your want …
Traffic: 1612 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6