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Recent Replies
Comment: Issues with featureCounts
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biofalconch
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What does the summary say? (featureCounts generates a summary file with different classifications, more about it on the subread manual unde…
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biofalconch
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Providing what you have already tried as well as the error messages you get can go a long way :). Nevertheless, here is the github repo fro…
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Joe
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You will need to look at `seqkit`'s regex and other advanced matching tools in that case, since you can't use simple string matches.
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Matthias Zepper
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Not at all my field of expertise, but the [AMBER package][1] is what we used in our protein bioinfo classroom exercise back in the day. I t…
Comment: Convert amino acid sequences into nucleotide sequences
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sperezilvia
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I have a problem. The SeqID from the nucleotide.fasta doesn't match with the SeqID from the protein.fasta because in the protein.fasta the …
Comment: How to plot coverage and depth statistics of a bam file
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William
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Hi Jinli,
It seems to be related to the pandas version you are using. Which version are you using? Try to install the latest version and s…
Comment: QC of genetic data
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kl
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Thanks for the advice. What about the third column (GS in plink). I am used to it being 0?
And last question, what does it mean when there …
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You can align the data and then determine coverage over the exons, then checking which kit (based on what they promise to capture) it fits …
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https://github.com/ZihaoShu/Tax4Fun2 has tar file `Tax4Fun2_1.1.5.tar.gz`, download and [install from source](https://stackoverflow.com/q/…
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[NAR Genomics and Bioinformatics][1] also has Application Notes section for short (up to 3000 words) articles devoted to program, workflow,…
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it's just a log about : https://en.wikipedia.org/wiki/External_sorting and about https://en.wikipedia.org/wiki/Merge_sort
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DareDevil
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LR can be sensitive to the scale of your predictor variable. Since your gene expression values are all within a small range (between 8 and …
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Unfortunately, I got a new error:
MemoryError: bam file #0 could not be sorted by cells.
This is probably related to an ol…
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