Tutorial:
CITEseq tutorial
5 days ago by
Ming Tommy Tang
★
3.6k
1
vote
0
replies
128
views
0
votes
0
replies
98
views
Tutorial:
download metadata using GEOquery
1 day ago by
Ming Tommy Tang
★
3.6k
Recent Votes
Recent Locations •
All
Germany, just now
Germany, just now
United States, just now
United States, just now
Stony Brook University, NY, just now
Spain, 1 minute ago
France, 1 minute ago
Recent Awards •
All
Scholar to
Pierre Lindenbaum
158k
Good Answer to
Yuri
★
1.6k
Scholar to
Istvan Albert
99k
Popular Question to
ta_awwad
▴
340
Teacher to
Dave Carlson
★
1.4k
Popular Question to
iamsmor
•
0
Recent Replies
Comment: How should I run ssgsea analysis ?
by
Ram
41k
Just add a statement to your comments stating that the text was generated using ChatGPT - it is a good tool but it's not aware of its own s…
Comment: Autocompleting paths within scripts
by
DanielEB_fisk
▴
20
Yep, sorry, you are right it is not a bioinformatics question. I asked here because it relates with the work we do anyway.
Comment: autodock vina on mac
by
Ram
41k
That section is for after you have virtualbox set up. You may have to run a really old version of macOS within the virtualbox, so be prepar…
Comment: ChatGPT optimized for bioinformatics questions
by
Ram
41k
I understand. The purpose of my comment is to serve as feedback.
Comment: How can I obtain the DNA sequences of each CDS for several genbank files?
by
Ram
41k
Look into passing command line parameters to a python script. You can pass the input file name as a parameter to the script and execute the…
Answer: Autocompleting paths within scripts
by
Michael
53k
Not really a Bioinformatics question but generally very useful: [vim can do that][1]
[type some prefix of path]<Ctrl-x><Ctrl-f>
This…
Comment: How can I obtain the DNA sequences of each CDS for several genbank files?
by
Raphaëlle
•
0
Hello,
Thank you very much for your quick reply. That was indeed the issue!
Another question: is there a simple way of automating this …
Answer: Cluster sub-set analysis using Seurat
by
j.gleixner
▴
10
There now is also `Seurat::FindSubCluster`
Comment: How can i control the cluster number in scRNASeq clustering by Seurat package
by
j.gleixner
▴
10
There is now also Seurat::BuildClusterTree that makes this easier.
Answer: How can i control the cluster number in scRNASeq clustering by Seurat package
by
j.gleixner
▴
10
If you want to get a certain number of clusters without resorting to trying different settings for the resolution parameter,
you can firs…
Comment: i ues schicexplorer's hicbuildmatrix code complains that two sam files do not ha
by
1125195245
•
0
I tried using bowtie2's --reorder command to output a sam file for each of the two files, and then used both sam files to build the matrix,…
Comment: How to speed-up to contruct phylogenetic tree
by
Nelo
▴
20
I used MEGA CC (comand line option) but there is no option to specify threads in its `--help` manual . And default thread is 4
Comment: How to speed-up to contruct phylogenetic tree
by
Nelo
▴
20
The average length of fasta sequences is ~300aa length.
I can't exclude any sequences as I have to provide them nomenclature aslo on the ba…
Comment: How to speed-up to contruct phylogenetic tree
by
Nelo
▴
20
I used Raxml for a trial fasta file of about only 33 sequences as: `raxmlHPC-PTHREADS-AVX -f a -T 80 -m PROTGAMMAWAG -n test1 -s bittergou…
Traffic: 2785 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6