Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
184 results • Page
3 of 4
Sort: Views
Rank
Views
Votes
Replies
18
votes
13
replies
2.1k
views
Tutorial:
Screen shots of text (please don't)!
meta
updated 10 months ago by
Ram
43k • written 7.0 years ago by
Michael
54k
0
votes
0
replies
2.1k
views
Tutorial:
New GATB-Core Tutorial: learn the Genome Analysis Tool Box... online
next-gen
GATB
updated 11 months ago by
Ram
43k • written 7.4 years ago by
patrick.durand
▴ 140
2
votes
0
replies
2.1k
views
Tutorial:
How to display Agilent CGH array in IGV
IGV
CGH
updated 10 months ago by
Ram
43k • written 6.3 years ago by
sacha
★ 2.4k
2
votes
3
replies
1.9k
views
Tutorial:
Help demonstrate reproducibility in bioinformatics with the GA4GH's tool execution Challenge
GA4GH
Docker
CWL
Rabix
updated 11 months ago by
Ram
43k • written 7.1 years ago by
adrian.sharma
▴ 20
7
votes
2
replies
1.9k
views
Tutorial:
Introduction to Human Genomics for Clinical Informaticists
genome
updated 10 months ago by
Ram
43k • written 6.6 years ago by
bdolin
▴ 90
0
votes
1
reply
1.9k
views
Tutorial:
Nonparametric Regression STATA 15
STATA-15
Nonparametric-Regression
STATA
updated 10 months ago by
Ram
43k • written 6.3 years ago by
helgasaraswati
▴ 10
3
votes
0
replies
1.9k
views
Tutorial:
Project-based bioinformatics workshops online
ChIP-Seq
RNA-Seq
genome
gene
updated 11 months ago by
Ram
43k • written 7.6 years ago by
elia.brodsky
▴ 340
4
votes
1
reply
1.8k
views
Tutorial:
One of the easy way to achieve read count and RPKM file
RNA-Seq
updated 10 months ago by
Ram
43k • written 6.6 years ago by
maleknias
▴ 40
1
vote
1
reply
1.8k
views
Tutorial:
Live webinar: Implications of Next Generation Sequencing in Molecular Diagnosis of Cancer on 28 Sep 2016
alignment
sequencing
genome
SNP
updated 11 months ago by
Ram
43k • written 7.6 years ago by
Genomics
▴ 70
2
votes
0
replies
1.7k
views
Tutorial:
How to get protein sequence from UniProtID or any other accession
protein
uniprot
sequence
updated 11 months ago by
Ram
43k • written 7.7 years ago by
Whoknows
▴ 960
7
votes
2
replies
1.7k
views
Tutorial:
A tale of two heatmap function
clustering
heatmap
updated 11 months ago by
Ram
43k • written 7.5 years ago by
Ming Tommy Tang
★ 3.9k
3
votes
1
reply
1.7k
views
Tutorial:
Various youtube tutorials, including using proteomicsdb, finding adaptors, etc.
RNA
Python
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Jordan Anaya
★ 1.1k
5
votes
2
replies
1.6k
views
Tutorial:
ENCODE 2016: Research Applications and Users Meeting
ChIP-Seq
next-gen
ENCODE
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Ar
★ 1.1k
1
vote
0
replies
1.6k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
bioconductor
subversion
updated 10 months ago by
Ram
43k • written 6.6 years ago by
Bohdan Khomtchouk
▴ 350
0
votes
0
replies
1.6k
views
Tutorial:
PLS SEM (Partial Least Square Sructural Equation Modeling) Analysis WarpPLS 6
R
updated 10 months ago by
Ram
43k • written 6.2 years ago by
helgasaraswati
▴ 10
0
votes
0
replies
1.6k
views
Tutorial:
MWD (Mackinnon, White And Davidson) In R
R
updated 10 months ago by
Ram
43k • written 6.2 years ago by
helgasaraswati
▴ 10
0
votes
0
replies
1.6k
views
Tutorial:
Free Online Course "Code of Life" started today
genome
gene
sequence
updated 11 months ago by
Ram
43k • written 7.4 years ago by
stefanie.schweiger
• 0
2
votes
0
replies
1.5k
views
Tutorial:
Webinar: Extracting research evidence from publications
text-mining
ontology
pubmed
updated 10 months ago by
Ram
43k • written 6.1 years ago by
Maria_Levchenko
▴ 60
5
votes
0
replies
1.5k
views
Tutorial:
GEO data mining (IB) - Downloading Sequence Read Archive (SRA) raw data
geo
RNA-Seq
data-mining
SRA
updated 9 months ago by
Ram
43k • written 15 months ago by
Novogene
▴ 410
1
vote
2
replies
1.5k
views
Tutorial:
ViennaRNA package installation in Windows
windows
rna
mfold
viennarna
updated 9 months ago by
Ram
43k • written 18 months ago by
Sandhiya
▴ 20
0
votes
0
replies
1.5k
views
Tutorial:
RAE Method for DNAcopy
R
updated 11 months ago by
Ram
43k • written 8.1 years ago by
sainiisha22
• 0
1
vote
0
replies
1.4k
views
Tutorial:
Fall 2017 Introduction to Human Genomics for Clinical Informaticists
genome
updated 10 months ago by
Ram
43k • written 6.2 years ago by
bdolin
▴ 90
2
votes
0
replies
1.4k
views
Tutorial:
Principal Component Analysis (PCA ON T-BIOINFO)
RNA-Seq
next-gen
updated 10 months ago by
Ram
43k • written 5.8 years ago by
elia.brodsky
▴ 340
0
votes
0
replies
1.4k
views
Tutorial:
Data Panel In R Commander
R
updated 10 months ago by
Ram
43k • written 6.3 years ago by
helgasaraswati
▴ 10
11
votes
3
replies
1.4k
views
Tutorial:
Creating great documentation for bioinformatics software
Software-Documentation
updated 11 months ago by
Ram
43k • written 7.7 years ago by
venu
7.1k
0
votes
0
replies
1.3k
views
Tutorial:
Webinar: Accelerating skin research by pre-screening of molecules for skin sensitization risk
skin-sensitization
chemoinformatics
updated 11 months ago by
Ram
43k • written 7.3 years ago by
indhupriya.b
▴ 10
0
votes
0
replies
1.2k
views
Tutorial:
In the cloud - Guide to running VerifyBamID to estimate DNA sample contamination
sequence
cloud
dna
sequencing
updated 10 months ago by
Ram
43k • written 5.7 years ago by
corlinp
• 0
2
votes
0
replies
1.2k
views
Tutorial:
GEO data mining (III) - Gene pathway enrichment analysis with complete code sharing
geo
R
data-mining
Gene-pathway-enrichment
RNA-Seq
updated 9 months ago by
Ram
43k • written 15 months ago by
Novogene
▴ 410
2
votes
0
replies
1.1k
views
Tutorial:
Analysis of Smart-Seq3 data with kallisto-bustools
single-cell
kallisto
transcriptomics
smart-seq3
pipeline
updated 4 months ago by
Ali
• 0 • written 14 months ago by
firestar
★ 1.6k
3
votes
3
replies
1.1k
views
Tutorial:
multi-omics data integration: a case study with transcriptomics and genomics mutation data
mutation
RNAseq
multiomics
updated 12 weeks ago by
sil_bioinfo
▴ 40 • written 7 months ago by
Ming Tommy Tang
★ 3.9k
6
votes
2
replies
1.0k
views
Tutorial:
Updated List of Unix tutorials 2023
Unix
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.4k
4
votes
2
replies
1.0k
views
Tutorial:
How to use UCSC genome browser to check the transcription factor binding at your favorite gene
UCSC
transcription
factor
ChIP-seq
8 months ago by
Ming Tommy Tang
★ 3.9k
4
votes
0
replies
923
views
Tutorial:
How to make a heatmap in R and deep understand it
heatmap
r
10 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
3
replies
922
views
Tutorial:
Gibbs Sampling Algorithm Implementation for Searching DNA Motifs
montecarlo
DNA
motif
gibbssampling
splice
12 months ago by
barslmn
★ 2.1k
1
vote
2
replies
847
views
Tutorial:
How to ask computational biology questions
computational-biology
updated 9 months ago by
Ram
43k • written 9 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
796
views
Tutorial:
List of Machine Learning-Based Scoring Function Papers
machine-learning
docking
papers
updated 4 months ago by
Ram
43k • written 12 months ago by
Milad
▴ 10
4
votes
0
replies
732
views
Tutorial:
How to do GSEA in R for RNAseq data
gsea
RNAseq
rstats
9 months ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
706
views
Tutorial:
best practices for single-cell RNAseq analysis
cell
single
scRNAseq
9 months ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
682
views
Tutorial:
Get a list of genes associated with a drug in 1 min
drug
genes
drug-targets
updated 9 months ago by
Ram
43k • written 9 months ago by
Coremine Medical
▴ 20
1
vote
0
replies
668
views
Tutorial:
How to pre-process scRNAseq data from fastq to count matrix with two lines of code
unix
scRNA-seq
single-cell
rstats
updated 9 months ago by
Ram
43k • written 9 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
4
replies
662
views
Tutorial:
Reverse pharmacology: how to predict drugs with genes or disease names?
drugs
drug-targets
genes
4 months ago by
Coremine Medical
▴ 20
1
vote
0
replies
658
views
Tutorial:
How to convert gene ids in R
computational-biology
gene-id
rstats
updated 8 months ago by
Ram
43k • written 8 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
648
views
Tutorial:
How to start disease research quickly and easily?
proteins
pathways
disease
research-design
genes
9 months ago by
Coremine Medical
▴ 20
0
votes
0
replies
643
views
Tutorial:
T Cell Clonal Analysis Using Single-cell RNA Sequencing and Reference Maps
RNAseq
TCR
single-cell
computational
biology
7 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
624
views
Tutorial:
How to read all files into a single dataframe (merge all RNAseq count table)
RNA-seq
rstats
updated 9 months ago by
Ram
43k • written 9 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
621
views
Tutorial:
Free Book : Computational Biology of a cell signalling pathway using R
cell-signalling
R
Computational-Biology
9 months ago by
sinha.shriprakash
▴ 20
1
vote
0
replies
614
views
Tutorial:
common mistakes in using spreadsheets
excel
spreadsheet
structured-data
updated 8 months ago by
Ram
43k • written 8 months ago by
Ming Tommy Tang
★ 3.9k
3
votes
1
reply
608
views
Tutorial:
Coordinate Systems and genomic variant description
coordinate-system
HGVS
normalization
VCF
updated 8 months ago by
Ram
43k • written 8 months ago by
Juke34
8.5k
1
vote
0
replies
588
views
Tutorial:
How to make a perfect heatmap using RNAseq data
heatmap
RNAseq
rstats
9 months ago by
Ming Tommy Tang
★ 3.9k
7
votes
0
replies
570
views
Tutorial:
Polygenic Risk Score Calculation
genetic-burden
r
prs
ggplot
glm
7 months ago by
barslmn
★ 2.1k
184 results • Page
3 of 4
Recent Votes
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Recent Locations •
All
China,
just now
UCLA,
just now
United States,
2 minutes ago
Europe,
11 minutes ago
Cambridge, MA,
14 minutes ago
United States,
25 minutes ago
Peru,
28 minutes ago
Recent Awards •
All
Teacher
to
Pierre Lindenbaum
160k
Popular Question
to
brian.fristensky
▴ 460
Popular Question
to
Ann
★ 2.4k
Commentator
to
GenoMax
140k
Commentator
to
Devon Ryan
104k
Popular Question
to
amitpande74
▴ 20
Popular Question
to
beacamara
• 0
Recent Replies
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
by
GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
The question you should be looking into is why the Q scores are dropping there? Are there `N` calls indicating some issue with that cycle?
Comment: Error in openning FastQC
by
GenoMax
140k
What is `ctrl+c ctrl+v`? You may actually be killing the running fastqc process. If you run `fastqc` interactively (like what was shown ab…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
Ugh. I've definitely done this one before as well. And was none too happy about it.
Comment: Error in openning FastQC
by
friszd
• 0
fastqc -o output.html input.fastq ctrl+c ctrl+v
Comment: Error running local blastn in R using system2
by
GenoMax
140k
What do you see if you `cat nt_euk.nal`? Do the number of pieces mentioned in that file match with what you locally have?
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
It is your data and if you want to do that it is up to you. You may be throwing away essentially good data (you should remove the nextera s…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
Some things never change ... the most common mistake is still the one on top there
Traffic: 1671 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6