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Limit : this year
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318 results • Page
2 of 7
Sort: Votes
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Votes
Replies
40
votes
9
replies
11k
views
10 follow
Tutorial:
Resources for flow cytometry bioinformatics
single-cell
flow-cytometry
updated 8 months ago by
Ram
41k • written 9.6 years ago by
Ahill
★ 1.9k
39
votes
8
replies
12k
views
10 follow
Tutorial:
Methylation Analysis Tutorial in R_part1
cancer
R
methylation
updated 8 months ago by
Ram
41k • written 3.2 years ago by
Hamid Ghaedi
3.1k
39
votes
6
replies
18k
views
Tutorial:
Creating chromosome karyotype plot with R and ggplot2
ggplot2
R
chromosome
karyotype
updated 6 months ago by
Ram
41k • written 6.3 years ago by
steve
★ 3.4k
36
votes
14
replies
32k
views
14 follow
Tutorial:
installing samtools with conda - overcoming two common errors
samtools
conda
updated 22 days ago by
psschlogl
▴ 50 • written 3.3 years ago by
lavinia.gordon
▴ 160
36
votes
5
replies
5.9k
views
Tutorial:
[Beginner] Introduction to bioinformatics file types
fastq
fasta
bed
SAM
updated 11 weeks ago by
gallardodiazmiriam
▴ 20 • written 8.4 years ago by
Luke Crichton
▴ 410
35
votes
17
replies
16k
views
12 follow
Tutorial:
Machine Learning For Cancer Classification - Part 3 - Predicting With A Random Forest Classifier
machine-learning
classification
updated 6 months ago by
GenoMax
136k • written 10.0 years ago by
Obi Griffith
20k
34
votes
15
replies
19k
views
12 follow
Tutorial:
TCGA UUIDS to TCGA barcode (SampleID) in R
next-gen
GDC
R
TCGA
updated 8 months ago by
Ram
41k • written 7.2 years ago by
martinguerrerog89
▴ 310
34
votes
15
replies
6.0k
views
6 follow
Tutorial:
How to do data cleaning for VCF genetic file
vcf
updated 8 months ago by
Ram
41k • written 4.4 years ago by
Shicheng Guo
★ 9.3k
32
votes
12
replies
29k
views
7 follow
Tutorial:
So What Does The Sequence Duplication Rate Really Mean In A Fastqc Report
quality-control
fastqc
updated 9 months ago by
Ram
41k • written 10.1 years ago by
Istvan Albert
99k
32
votes
4
replies
7.3k
views
Tutorial:
Fast LD computation from VCF files using tomahawk
ld
snp
vcf
vcftools
bcftools
updated 8 months ago by
Ram
41k • written 5.1 years ago by
firestar
★ 1.6k
31
votes
8
replies
11k
views
7 follow
Tutorial:
How To Create A Bioinformatics Pipeline Using Spotify !
python
pipeline
updated 8 months ago by
Ram
41k • written 9.6 years ago by
Rad
▴ 810
31
votes
6
replies
11k
views
Tutorial:
A simple tutorial for a complex ComplexHeatmap
clustering
pam
arthritis
ComplexHeatmap
updated 8 months ago by
Ram
41k • written 3.5 years ago by
Kevin Blighe
86k
30
votes
14
replies
16k
views
8 follow
Tutorial:
Installation of the MuSiC suite on unsupported Linux distributions
genome-music
linux
smg
updated 9 months ago by
Ram
41k • written 10.8 years ago by
Cyriac Kandoth
6.0k
29
votes
5
replies
6.2k
views
Tutorial:
Gnu Parallel Tutorial
parallel
gnu-parallel
updated 9 months ago by
Ram
41k • written 10.2 years ago by
ole.tange
★ 4.4k
29
votes
10
replies
73k
views
9 follow
Tutorial:
Installing an updated R version (>=4.0) using conda
software-error
R
updated 8 months ago by
Ram
41k • written 2.7 years ago by
Nitin Narwade
★ 1.5k
28
votes
4
replies
4.1k
views
Tutorial:
Modern Statistics for Modern Biology
statistics
updated 8 months ago by
Ram
41k • written 4.9 years ago by
Jean-Karim Heriche
26k
26
votes
0
replies
2.3k
views
Tutorial:
Resources / databases for clinical interpretation of cancer variants
interpretation
cancer
annotation
variant
updated 8 months ago by
Ram
41k • written 4.1 years ago by
Malachi Griffith
19k
25
votes
15
replies
8.6k
views
8 follow
Tutorial:
Syllabus To Learn Bioinformatics From Online Video Resources
course
training
mooc
updated 9 months ago by
Ram
41k • written 10.9 years ago by
Medhat
9.7k
24
votes
4
replies
7.1k
views
Tutorial:
Using EnrichedHeatmap for visualization of NGS experiments
heatmap
chip-seq
atac-seq
EnrichedHeatmap
updated 8 months ago by
Ram
41k • written 4.3 years ago by
ATpoint
78k
23
votes
19
replies
6.4k
views
10 follow
Tutorial:
MutScan: Detect important mutations by scanning FastQ files directly
fastq
mutation
cancer
target
updated 7 months ago by
Ram
41k • written 7.2 years ago by
chen
★ 2.5k
22
votes
1
reply
3.1k
views
Tutorial:
Introduction To R Course Materials Available
R
updated 10 months ago by
Ram
41k • written 11.6 years ago by
Sean Davis
26k
22
votes
2
replies
5.8k
views
Tutorial:
Use a workflow management tool to manage your computational pipelines
workflow-management
snakemake
pipeline
updated 7 months ago by
Ram
41k • written 7.1 years ago by
Eric Lim
★ 2.1k
21
votes
10
replies
6.3k
views
Tutorial:
Finding the significance of the overlap between 2 or more gene sets using simulation in R.
tidyverse
gene
R
updated 8 months ago by
Ram
41k • written 3.2 years ago by
rpolicastro
12k
21
votes
5
replies
6.6k
views
Tutorial:
Analysis of single-cell RNA-seq data
single-cell
RNA-Seq
updated 7 months ago by
Ram
41k • written 7.4 years ago by
Geparada
★ 1.5k
21
votes
9
replies
6.3k
views
8 follow
Tutorial:
Interactive Perl Learning
perl
updated 9 months ago by
Ram
41k • written 10.5 years ago by
Medhat
9.7k
20
votes
4
replies
2.5k
views
Tutorial:
Bash One-liners collection on Github
bash
linux
shell
updated 8 months ago by
Ram
41k • written 4.5 years ago by
nim.1111.ou
▴ 180
20
votes
0
replies
8.6k
views
Tutorial:
Metagenomics Review Papers
metagenomics
papers
updated 9 months ago by
Ram
41k • written 11.2 years ago by
Istvan Albert
99k
20
votes
4
replies
8.4k
views
Tutorial:
DE analysis by edgeR
RNA-Seq
R
edgeR
updated 7 months ago by
Ram
41k • written 7.2 years ago by
fi1d18
★ 4.2k
20
votes
7
replies
6.1k
views
Tutorial:
Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2
RNA-Seq
R
updated 8 months ago by
Ram
41k • written 5.1 years ago by
ahmad mousavi
▴ 760
20
votes
14
replies
3.7k
views
Tutorial:
Video-tutorials: How to get started using EaSeq for interactive ChIP-seq data visualization and exploration (Windows)
ChIP-Seq
visualization
Windows
EaSeq
updated 7 months ago by
Ram
41k • written 7.5 years ago by
Mads Lerdrup
▴ 460
20
votes
2
replies
7.7k
views
Tutorial:
Creating a karyotype plot with genes using karyoploteR
karyoploteR
visualization
R
genome
updated 6 months ago by
Ram
41k • written 6.0 years ago by
bernatgel
★ 3.4k
20
votes
6
replies
5.3k
views
Tutorial:
Open Targets and programmatic access
open-targets
disease
API
drug
updated 8 months ago by
Ram
41k • written 7.2 years ago by
Denise CS
★ 5.2k
20
votes
4
replies
14k
views
Tutorial:
How To Install A Specific Cdf Package For Use In Bioconductor
bioconductor
affymetrix
updated 9 months ago by
Ram
41k • written 10.7 years ago by
Obi Griffith
20k
19
votes
4
replies
8.7k
views
Tutorial:
Rna Seq Experimental Design For Measuring Differential Gene Expression
RNA-seq
updated 9 months ago by
Ram
41k • written 10.7 years ago by
Istvan Albert
99k
19
votes
2
replies
3.3k
views
Tutorial:
Beginner's Handbook to Next Generation Sequencing
NGS
updated 6 months ago by
Ram
41k • written 6.6 years ago by
support
▴ 640
19
votes
13
replies
7.9k
views
10 follow
Tutorial:
Setting up Aspera Connect (ascp) on Linux and macOS
ascp
aspera
updated 27 days ago by
jude
• 0 • written 17 months ago by
ATpoint
78k
18
votes
7
replies
6.0k
views
Tutorial:
scRNA-seq CITE-seq-count bioinformatics
CITE-seq-count
scRNA-seq
RNA-Seq
updated 4 months ago by
ATpoint
78k • written 3.7 years ago by
colindaven
5.7k
18
votes
22
replies
8.4k
views
10 follow
Tutorial:
Create de novo repeat library
de-novo
repeat
annotation
updated 9 weeks ago by
evoecogen
▴ 20 • written 4.0 years ago by
Juke34
8.4k
18
votes
2
replies
5.7k
views
Tutorial:
Update kraken databases
database
kraken
k-mer
python
updated 6 months ago by
Ram
41k • written 6.6 years ago by
Sej Modha
5.3k
17
votes
13
replies
2.0k
views
Tutorial:
Screen shots of text (please don't)!
meta
updated 6 months ago by
Ram
41k • written 6.7 years ago by
Michael
53k
16
votes
11
replies
14k
views
7 follow
Tutorial:
retrieve full TCGA datasets from cBioportal with R
TCGA
RNA-seq
data-retrieval
cBioportal
R
updated 8 months ago by
Ram
41k • written 7.1 years ago by
TriS
★ 4.7k
16
votes
0
replies
6.5k
views
Tutorial:
Introduction To Ngs Bioinformatics By The Bioinformatics Team At The University Of Texas
course
training
updated 9 months ago by
Ram
41k • written 11.4 years ago by
Istvan Albert
99k
16
votes
5
replies
8.8k
views
Tutorial:
Using The Biomart Perl Api For Simple Queries
api
perl
biomart
updated 9 months ago by
Ram
41k • written 11.2 years ago by
Obi Griffith
20k
16
votes
11
replies
7.8k
views
Tutorial:
How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking
meta
how-to
documentation
8 months ago by
Ram
41k
16
votes
6
replies
6.2k
views
Tutorial:
How to make your snakefiles self-documenting
snakemake
updated 7 months ago by
Ram
41k • written 7.1 years ago by
Botond Sipos
★ 1.7k
16
votes
7
replies
15k
views
Tutorial:
Integrating VDJ sequencing data with Seurat
VDJ
Seurat
sc-RNAseq
clonotyping
updated 8 months ago by
Ram
41k • written 4.5 years ago by
atakanekiz
▴ 310
16
votes
0
replies
13k
views
Tutorial:
Workshop - Analysis Of Next Generation Sequencing Data
RNA-seq
updated 9 months ago by
Ram
41k • written 11.6 years ago by
David Langenberger
10k
15
votes
2
replies
6.7k
views
Tutorial:
Genotype And Snp Calling Review Papers
snp
updated 9 months ago by
Ram
41k • written 11.2 years ago by
Istvan Albert
99k
15
votes
5
replies
15k
views
Tutorial:
How to create a mutation lolliplot with GenVisR
bioconductor
graphics
R
genvisr
updated 7 months ago by
Ram
41k • written 7.5 years ago by
Obi Griffith
20k
15
votes
3
replies
4.5k
views
Tutorial:
NCBI blast tutorial
ncbi
blast
updated 7 months ago by
Ram
41k • written 7.6 years ago by
Eric Normandeau
11k
318 results • Page
2 of 7
Recent Votes
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
Answer: How should I run ssgsea analysis ?
Comment: Parsing XML file from dbGaP
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
Comment: SPAdes error: finished abnormally, OS return value: 21
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
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Comment: featureCounts results: low rate of 'Successfully assigned alignments'
by
kvn95ss
▴ 20
Almost all your samples have the over represented sequence, you can blast the top 10 recurring sequences and see what it could be.
Comment: How to deeply sequence long inserts
by
GenoMax
136k
Linked read kits have not been offered by 10x genomics from last 3-4 years so that is not an option. Illumina now offers a long read tech…
Comment: Viral genes not showing up in combined mouse+virus alignment
by
GenoMax
136k
Try taking out the additional header lines from the combined GTF file. `NC_005089.1` lines should be immediately followed by `NC_001846.1` …
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
by
Nitin Narwade
★ 1.5k
Hmmmmm, okay. In this case I could think of another workaround, instead of drawing line/marks, you can add another modality to your plot, …
Comment: featureCounts results: low rate of 'Successfully assigned alignments'
by
Hamtaro
▴ 10
I added the fastQC. What do you think of the possible cause I have proposed?
Comment: Problem in installing 'magick' R package
by
Jean-Karim Heriche
26k
This isn't a bioinformatics question. What do you mean by "install all the dependencies"? Did you read the error message? It's telling you …
Answer: Problem in installing 'magick' R package
by
DBScan
▴ 200
Have you read the error message? it tells you to try installing the Magick++ library: ``` Try installing: deb: libmagick++-dev (Debian, …
Answer: FVA on Sybil
by
Thomas
• 0
The first half of this vector should be your minimal fluxes per reaction and the second half your maximal fluxes per reaction. Thus this ve…
Comment: AttributeError: module 'collections' has no attribute 'Hashable'
by
jiyoung
▴ 20
Currently I am experiencing the same problem. Have you solved this?
Comment: Help doing differential expression analysis -experimental design and gProfiler T
by
rajabolacuan
• 0
Good Information Sir
Comment: Viral genes not showing up in combined mouse+virus alignment
by
cook.675
▴ 200
Hello I was curious to follow up and wonder if anyone knew why the viral genes are not showing up in the count matrix? I can't seem to solv…
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
CTLong
▴ 10
That makes sense. Thanks for the reminder.
Comment: bwa mem hangs after a few thousand reads
by
GenoMax
136k
Then you probably are best served by talking with your local sys admins to see where the issue may be.
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
GenoMax
136k
> even if tpe and tbo are trailing after adapter and quality trimming Priority/order of operations in coded in the program. Brian will be …
Comment: bwa mem hangs after a few thousand reads
by
cee28
• 0
Actually, I originally did both of those things that you suggested. My original command at the top of the post was submitted to our cluster…
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