Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
184 results • Page
3 of 4
Sort: replies
Rank
Views
Votes
Replies
0
votes
1
reply
500
views
Tutorial:
TAPIS installation and usage
APA
Iso-seq
splicing
TAPIS
analysis
alternative
updated 6 months ago by
ATpoint
81k • written 6 months ago by
JC
▴ 30
0
votes
1
reply
470
views
Tutorial:
Single-cell RNA-seq: Preprocessing: Preprocessing the data of scRNA-seq with omicverse-1
scRNA-seq
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
Julia Ma
▴ 120
6
votes
1
reply
373
views
Tutorial:
Bulk RNA-seq: Different Expression Analysis
differential-expression
RNA-seq
updated 10 weeks ago by
Ram
43k • written 11 weeks ago by
Julia Ma
▴ 120
7
votes
1
reply
2.2k
views
Tutorial:
A gentle introduction to biogo
sequence
golang
biogo
updated 10 months ago by
Ram
43k • written 6.4 years ago by
Botond Sipos
★ 1.7k
3
votes
1
reply
2.3k
views
Tutorial:
Convert bam files to fastq in numbers as indicated in samtools flagstat stats.
samtools
bam
alignment
fastq
sequence
updated 10 months ago by
Ram
43k • written 6.8 years ago by
kirannbishwa01
★ 1.6k
15
votes
1
reply
3.2k
views
Tutorial:
Current Topics in Genome Analysis 2016 (collection of educational lectures)
genomics
training
lectures
workshop
updated 11 months ago by
Ram
43k • written 7.9 years ago by
Malachi Griffith
19k
0
votes
1
reply
1.9k
views
Tutorial:
Nonparametric Regression STATA 15
STATA-15
Nonparametric-Regression
STATA
updated 10 months ago by
Ram
43k • written 6.3 years ago by
helgasaraswati
▴ 10
0
votes
1
reply
246
views
Tutorial:
Single-cell RNA-seq: Annotation: Celltype auto annotation with MetaTiME
scRNA-seq
MetaTiME
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
Julia Ma
▴ 120
1
vote
1
reply
1.8k
views
Tutorial:
Live webinar: Implications of Next Generation Sequencing in Molecular Diagnosis of Cancer on 28 Sep 2016
alignment
sequencing
genome
SNP
updated 11 months ago by
Ram
43k • written 7.6 years ago by
Genomics
▴ 70
2
votes
0
replies
334
views
Tutorial:
Bulk RNA-seq: WGCNA (Weighted gene co-expression network analysis) analysis
WGCNA
RNA-seq
updated 10 weeks ago by
Ram
43k • written 11 weeks ago by
Julia Ma
▴ 120
1
vote
0
replies
224
views
Tutorial:
Single-cell RNA-seq: Annotation: Celltype auto annotation with SCSA
scRNA-seq
SCSA
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
Julia Ma
▴ 120
0
votes
0
replies
2.5k
views
Tutorial:
Rembrandt Glioma Data Analysis (PART II) - Are Gender specific genes related to cancer ?
gene
R
Rembrandt
updated 11 months ago by
Ram
43k • written 7.7 years ago by
majuang66
▴ 140
0
votes
0
replies
228
views
Tutorial:
Single-cell RNA-seq: Preprocessing: Data integration and batch correction-3
scRNA-seq
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
Julia Ma
▴ 120
0
votes
0
replies
1.4k
views
Tutorial:
Data Panel In R Commander
R
updated 10 months ago by
Ram
43k • written 6.3 years ago by
helgasaraswati
▴ 10
0
votes
0
replies
1.2k
views
Tutorial:
In the cloud - Guide to running VerifyBamID to estimate DNA sample contamination
sequence
cloud
dna
sequencing
updated 10 months ago by
Ram
43k • written 5.7 years ago by
corlinp
• 0
2
votes
0
replies
162
views
Tutorial:
Premade library preparation – considerations, tips and tricks (II)
Illumina.
Premade-library.
NovaSeqX.
4 weeks ago by
Novogene
▴ 410
5
votes
0
replies
2.2k
views
Tutorial:
Installing multiprocessor-capable MEME to work with a Slurm job scheduler environment
slurm
meme
parallel
updated 10 months ago by
Ram
43k • written 6.5 years ago by
Alex Reynolds
35k
2
votes
0
replies
6.8k
views
Tutorial:
How to - Install Python packages in a virtual environment (virtualenv)
ubuntu
cutadapt
virtualenv
python
windows
updated 10 months ago by
Ram
43k • written 6.3 years ago by
vimalkvn
▴ 320
2
votes
0
replies
1.1k
views
Tutorial:
Analysis of Smart-Seq3 data with kallisto-bustools
single-cell
kallisto
transcriptomics
smart-seq3
pipeline
updated 4 months ago by
Ali
• 0 • written 14 months ago by
firestar
★ 1.6k
4
votes
0
replies
393
views
Tutorial:
12 useful command line tools and tricks for genomics data science
unix
updated 8 weeks ago by
zx8754
11k • written 8 weeks ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
342
views
Tutorial:
Making Tile plots to show Synonymous Non-Synonymous mutation fraction
mutation
ggplotify
geom_tile
ggplot2
4 months ago by
rohitsatyam102
▴ 840
4
votes
0
replies
2.3k
views
Tutorial:
Accurate prediction of active enhancers using PARE
ChIP-Seq
histone-modification
enhancer
updated 10 months ago by
Ram
43k • written 7.0 years ago by
Sachin Pundhir
▴ 100
1
vote
0
replies
266
views
Tutorial:
Single-cell RNA-seq: Preprocessing: Data integration and batch correction
scRNA-seq
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
Julia Ma
▴ 120
0
votes
0
replies
2.1k
views
Tutorial:
PBS setting combination for bismark alignment to BS-seq or RRBS data
pbs
bismark
updated 11 months ago by
Ram
43k • written 7.4 years ago by
Shicheng Guo
★ 9.4k
2
votes
0
replies
3.2k
views
Tutorial:
use the tool slicer to split big files (like FASTQ) to smaller files for parallel processing
opengene
slicer
fastq
splitter
updated 9 months ago by
Ram
43k • written 6.4 years ago by
chen
★ 2.5k
1
vote
0
replies
2.5k
views
Tutorial:
GEO Data Mining (II) - Differential gene expression analysis and visualization with complete code sharing
geo
R
data-mining
differential-gene-expression
RNA-Seq
updated 9 months ago by
Ram
43k • written 15 months ago by
Novogene
▴ 410
1
vote
0
replies
211
views
Tutorial:
Bulk RNA-seq: TCGA database preprocess
RNA-seq
updated 10 weeks ago by
Ram
43k • written 11 weeks ago by
Julia Ma
▴ 120
0
votes
0
replies
3.1k
views
Tutorial:
Normality Test For JB (Jarque Bera) Test R Commander
Jarque-Bera-Test
R-Commander
updated 10 months ago by
Ram
43k • written 6.3 years ago by
helgasaraswati
▴ 10
0
votes
0
replies
269
views
Tutorial:
How to convert sra files to fastq files using parallelized fastq-dump
fastq
sra
9 weeks ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
189
views
Tutorial:
How to Label the Y Axis with percentage sign and Order Bars in ggplot2 using a single cell dataset
seurat
single-cell
ggplot2
10 weeks ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
3.6k
views
Tutorial:
Park Test for Heteroskedasticity In R Commander
R
Park-Test
updated 10 months ago by
Ram
43k • written 6.2 years ago by
helgasaraswati
▴ 10
1
vote
0
replies
1.4k
views
Tutorial:
Fall 2017 Introduction to Human Genomics for Clinical Informaticists
genome
updated 10 months ago by
Ram
43k • written 6.2 years ago by
bdolin
▴ 90
0
votes
0
replies
648
views
Tutorial:
How to start disease research quickly and easily?
proteins
pathways
disease
research-design
genes
9 months ago by
Coremine Medical
▴ 20
3
votes
0
replies
179
views
Tutorial:
Premade library preparation – considerations, tips and tricks (IA)
Premade-library
Illumina
NovaSeqX
4 weeks ago by
Novogene
▴ 410
14
votes
0
replies
9.5k
views
Tutorial:
How to generate PCA plot and heatmaps in R
heatmap
PCA
RNA-Seq
R
updated 11 months ago by
Ram
43k • written 7.5 years ago by
Ming Tommy Tang
★ 3.9k
7
votes
0
replies
3.0k
views
Tutorial:
On the concept of constant or intercept used in Differential Expression (DE) analysis
regression
limma
DESeq2
updated 11 months ago by
Ram
43k • written 7.9 years ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
1.6k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
bioconductor
subversion
updated 10 months ago by
Ram
43k • written 6.6 years ago by
Bohdan Khomtchouk
▴ 350
1
vote
0
replies
295
views
Tutorial:
CITEseq tutorial
CITEseq
Alevin
Seurat
3 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
1.6k
views
Tutorial:
MWD (Mackinnon, White And Davidson) In R
R
updated 10 months ago by
Ram
43k • written 6.2 years ago by
helgasaraswati
▴ 10
0
votes
0
replies
211
views
Tutorial:
Single-cell RNA-seq: Annotation: Celltype auto annotation with SCSA-3
scRNA-seq
SCSA
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
Julia Ma
▴ 120
1
vote
0
replies
795
views
Tutorial:
List of Machine Learning-Based Scoring Function Papers
machine-learning
docking
papers
updated 4 months ago by
Ram
43k • written 12 months ago by
Milad
▴ 10
2
votes
0
replies
706
views
Tutorial:
best practices for single-cell RNAseq analysis
cell
single
scRNAseq
9 months ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
2.3k
views
Tutorial:
How to do pathway analysis with transcriptomics data using ArrayAnalysis.org
transcriptomics
R
pathway-analysis
updated 11 months ago by
Ram
43k • written 7.8 years ago by
friederike.ehrhart
▴ 20
5
votes
0
replies
1.5k
views
Tutorial:
GEO data mining (IB) - Downloading Sequence Read Archive (SRA) raw data
geo
RNA-Seq
data-mining
SRA
updated 9 months ago by
Ram
43k • written 15 months ago by
Novogene
▴ 410
3
votes
0
replies
2.2k
views
Tutorial:
Deep Learning for Cancer Immunotherapy
keras
tensorflow
updated 10 months ago by
Ram
43k • written 6.2 years ago by
Jeremy Leipzig
22k
1
vote
0
replies
588
views
Tutorial:
How to make a perfect heatmap using RNAseq data
heatmap
RNAseq
rstats
9 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
2.8k
views
Tutorial:
Autocorrelation With Breusch Godfrey Serial Correlation LM Test R Commander
LM-Test
R
Autocorrelation
Breusch-Godfrey
updated 10 months ago by
Ram
43k • written 6.3 years ago by
helgasaraswati
▴ 10
0
votes
0
replies
1.6k
views
Tutorial:
PLS SEM (Partial Least Square Sructural Equation Modeling) Analysis WarpPLS 6
R
updated 10 months ago by
Ram
43k • written 6.2 years ago by
helgasaraswati
▴ 10
0
votes
0
replies
2.2k
views
Tutorial:
Transforming (Transformation) Data LN, Log, SQRT In R Commander
R
updated 10 months ago by
Ram
43k • written 6.2 years ago by
helgasaraswati
▴ 10
0
votes
0
replies
620
views
Tutorial:
Free Book : Computational Biology of a cell signalling pathway using R
cell-signalling
R
Computational-Biology
9 months ago by
sinha.shriprakash
▴ 20
184 results • Page
3 of 4
Recent Votes
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: Demonstrating lack of difference between two peaksets
Comment: Input arguments for AddOrReplaceReadGroups (Picard) from fastq
Answer: Input arguments for AddOrReplaceReadGroups (Picard) from fastq
Recent Locations •
All
United States,
just now
United States,
just now
France,
just now
United States,
1 minute ago
Berlin,
1 minute ago
United States,
2 minutes ago
India,
2 minutes ago
Recent Awards •
All
Commentator
to
GenoMax
140k
Popular Question
to
Ann
★ 2.4k
Commentator
to
Devon Ryan
104k
Popular Question
to
amitpande74
▴ 20
Scholar
to
Pierre Lindenbaum
160k
Popular Question
to
beacamara
• 0
Popular Question
to
blur
▴ 280
Recent Replies
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thanks, I modified.
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Pierre Lindenbaum
160k
11 years ago: https://www.biostars.org/p/7126/
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
haha yes exactly! After the first or second ruined fasta, I started "catting" all fasta files and piping to other commands, just to reduce …
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
... ha, beat me to it, posted at the same time ... this error rules them all .. here is a cool trick on how to count fasta headers in file…
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
I've definitely ruined some genome fasta files by running `grep ^> mygenome.fasta` instead of `grep "^>" mygenome.fasta`
Comment: Error in CIBERSORTx
by
o.nad
• 0
Hello. I faced the same problem but not able to resolve it. I don't have double quotation and no NA values and the dataset used is in the f…
Answer: Annotation of Complex genomes using NCBI Genome Workbench
by
Lissa Cruz Saavedra
• 0
Hi Recently, I used https://www.gensas.org/ to make the annotation. It was pretty practical and in my opinion easy. You just need to up…
Comment: Hybrid assembly Pacbio- Nanopore
by
Lissa Cruz Saavedra
• 0
Hi Thanks for your answer. I think I have very good coverage. My genome size is 48M. I also have data from poreC and illumina, the last on…
Comment: Variant calling of GBS data
by
analyst
▴ 10
Anyone please suggest which variant caller can be the best choice for variant calling of GBS data for polyploid plant.
Comment: Variant calling of GBS data
by
analyst
▴ 10
Does GATK Haplotypecaller take care of ploidy because few plants are polyploid?
Comment: Looking for RPIP Illumina kit probe sequences
by
GenoMax
140k
More than likely they will only be available in the accompanying analysis app (Explify RPIP) in BaseSpace. Check with Illumina tech support…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Mensur Dlakic
★ 26k
Pretty sure I have done it, but can't remember the details. You know that thing about blocking out traumatic events ...
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
by
GenoMax
140k
> I have just noticed in the documentation that there is no argument to specify the number of CPUs to use for calculations. If the program…
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
Do you have a plot of adapter contamination for this data from FastQC? If you have a lot of adapter dimers, short inserts i.e. bad quality…
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
Looks like those appear to be "polycomb associated non-coding RNA". You probably know what they are. https://www.ncbi.nlm.nih.gov/nuccore/…
Traffic: 2933 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6