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356 results • Page
2 of 8
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0
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0
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957
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Tutorial:
Alignment-free RNA-seq Differential Gene Expression Analysis with Kallisto & Sleuth
dge
kallisto
rnaseq
sleuth
21 months ago by
mo
• 0
2
votes
0
replies
2.0k
views
Tutorial:
Affymetrix HTA 2.0 id conversion
biomart
HTA
affymetrix
Affymetrix
2.0
22 months ago by
Kevin Blighe
85k
45
votes
2
replies
36k
views
Tutorial:
Mapping Reads With Bwa And Bowtie
bowtie
bwa
updated 3 months ago by
Ram
39k • written 11.2 years ago by
MSU course 2011
▴ 540
92
votes
105
replies
36k
views
25 follow
Tutorial:
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000genomes
PLINK
PCA
updated 11 weeks ago by
Ram
39k • written 4.7 years ago by
Kevin Blighe
85k
0
votes
0
replies
807
views
Tutorial:
Event & tutorial: open software tools and AI for improving bioimaging (SLURM, containerisation)
containerisation
bioimaging
SLURM
health
23 months ago by
Erin Haskell | ELIXIR
▴ 470
1
vote
0
replies
1.0k
views
Tutorial:
Slurm and parallelization
slurm
23 months ago by
Juke34
7.9k
1
vote
0
replies
1.0k
views
Tutorial:
How to: make Camellia sinensis var. sinensis (black tea) custom annotation files for BINGO Cytoscape
bingo
cytoscape
24 months ago by
Pratik
▴ 880
12
votes
1
reply
2.2k
views
Tutorial:
PCR Primer or Primer+Probe design
pcr
probe
rt-pcr
qpcr
primer
updated 24 months ago by
jared.andrews07
★ 14k • written 24 months ago by
Kevin Blighe
85k
116
votes
66
replies
41k
views
20 follow
Tutorial:
[Deprecated] Fast download of FASTQ files from the European Nucleotide Archive (ENA)
aspera
fastq-dump
Fastq
ENA
updated 11 weeks ago by
Ram
39k • written 4.9 years ago by
ATpoint
72k
4
votes
0
replies
967
views
Tutorial:
Long Read Genome Assembly Video Series
long-read
genome-assembly
24 months ago by
pbpanigrahi
▴ 420
0
votes
1
reply
799
views
Tutorial:
Add Customized Filters in GDC
gdc
updated 24 months ago by
cpad0112
21k • written 24 months ago by
Zhenyu Zhang
▴ 800
65
votes
26
replies
11k
views
11 follow
Tutorial:
Generating consensus sequence from bam file
fasta
consensus
bam
updated 11 weeks ago by
Ram
39k • written 4.2 years ago by
finswimmer
16k
12
votes
20
replies
12k
views
10 follow
Tutorial:
Associating VDJ clonotyping data with scRNA-seq in Seurat
single-cell
RNA-Seq
seurat
TCR
updated 11 weeks ago by
Ram
39k • written 4.0 years ago by
jared.andrews07
★ 14k
4
votes
2
replies
2.1k
views
Tutorial:
Apply beagle5.0 to make imputation and phasing under CentOS and PBS
beagle5.0
beagle
updated 11 weeks ago by
Ram
39k • written 4.0 years ago by
Shicheng Guo
★ 9.3k
45
votes
14
replies
65k
views
10 follow
Tutorial:
Using R in Conda
R
updated 11 weeks ago by
Ram
39k • written 2.9 years ago by
rohitsatyam102
▴ 690
31
votes
9
replies
26k
views
11 follow
Tutorial:
installing samtools with conda - overcoming two common errors
samtools
conda
updated 11 weeks ago by
Ram
39k • written 2.8 years ago by
lavinia.gordon
▴ 140
99
votes
16
replies
30k
views
18 follow
Tutorial:
Heatmaps in R
heatmap
R
updated 11 weeks ago by
Ram
39k • written 6.8 years ago by
Jean-Karim Heriche
26k
21
votes
2
replies
4.1k
views
Tutorial:
Extracting genomic feature sequences from GTF/GFF files with AGAT
extract
GTF
GFF
sequence
updated 8 months ago by
eggrandio
▴ 40 • written 2.1 years ago by
Juke34
7.9k
31
votes
6
replies
9.4k
views
Tutorial:
A simple tutorial for a complex ComplexHeatmap
clustering
pam
arthritis
ComplexHeatmap
updated 11 weeks ago by
Ram
39k • written 3.0 years ago by
Kevin Blighe
85k
78
votes
42
replies
29k
views
25 follow
Tutorial:
Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm
rna-seq
bioconductor
updated 22 days ago by
Ram
39k • written 9.6 years ago by
Irsan
★ 7.7k
8
votes
0
replies
2.2k
views
Tutorial:
Pipes in R: An introduction and some advanced tips and tricks.
R
2.2 years ago by
rpolicastro
12k
238
votes
176
replies
85k
views
73 follow
Tutorial:
Survival analysis of TCGA patients integrating gene expression (RNASeq) data
RNA-Seq
Survival
TCGA
updated 6 days ago by
Ram
39k • written 7.8 years ago by
TriS
★ 4.6k
6
votes
0
replies
1.6k
views
Tutorial:
data.frames in R: How vectorization can save you time and heartache
R
2.2 years ago by
rpolicastro
12k
8
votes
1
reply
1.1k
views
Tutorial:
Split a 'linearised' (flattened) FASTA sequence into multi-line using AWK
fasta
awk
updated 11 weeks ago by
Ram
39k • written 2.2 years ago by
Kevin Blighe
85k
21
votes
10
replies
5.2k
views
Tutorial:
Finding the significance of the overlap between 2 or more gene sets using simulation in R.
tidyverse
gene
R
updated 11 weeks ago by
Ram
39k • written 2.7 years ago by
rpolicastro
12k
12
votes
2
replies
1.1k
views
Tutorial:
Factors in R - How do they work, and how did I break my data?
R
updated 11 weeks ago by
Ram
39k • written 2.2 years ago by
rpolicastro
12k
148
votes
35
replies
59k
views
33 follow
Tutorial:
Tools For Metagenomic Data Analysis
metagenomics
next-gen
updated 3 months ago by
Ram
39k • written 10.5 years ago by
vijay
★ 1.6k
14
votes
2
replies
3.0k
views
Tutorial:
Methylation Analysis Tutorial in R_part2
cancer
methylation
RNA-Seq
R
updated 11 weeks ago by
Ram
39k • written 2.7 years ago by
Hamid Ghaedi
2.9k
4
votes
0
replies
1.8k
views
Tutorial:
Building mosdepth on macOS
nim
mosdepth
updated 11 weeks ago by
Ram
39k • written 3.1 years ago by
ATpoint
72k
16
votes
7
replies
13k
views
Tutorial:
Integrating VDJ sequencing data with Seurat
VDJ
Seurat
sc-RNAseq
clonotyping
updated 11 weeks ago by
Ram
39k • written 4.0 years ago by
atakanekiz
▴ 310
277
votes
33
replies
94k
views
25 follow
Tutorial:
Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
coordinates
updated 3 months ago by
Ram
39k • written 9.6 years ago by
Obi Griffith
20k
5
votes
0
replies
3.7k
views
Tutorial:
Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates without alignment), mutate (create mutant genomes) and other miscellaneou…
bbmap
updated 11 weeks ago by
Ram
39k • written 2.4 years ago by
GenoMax
129k
10
votes
0
replies
4.9k
views
Tutorial:
Yes .. BBMap can do that! - Part II randomreads (read simulation), demuxbyname/filterbyname, bbsplit (read binning/decontamination) and pileup (cover…
bbmap
updated 11 weeks ago by
Ram
39k • written 2.4 years ago by
GenoMax
129k
10
votes
0
replies
3.1k
views
Tutorial:
Yes .. BBMap can do that! - Part I : bbmap (aligner), bbduk (scan/trim), repair (fix PE reads) and reformat (format conversions)
bbmap
updated 11 weeks ago by
Ram
39k • written 2.4 years ago by
GenoMax
129k
11
votes
1
reply
2.3k
views
Tutorial:
Guidelines for the computational analysis of single-cell RNA sequencing data
scRNA-seq
updated 11 weeks ago by
Ram
39k • written 2.4 years ago by
Mensur Dlakic
★ 23k
40
votes
9
replies
11k
views
10 follow
Tutorial:
Resources for flow cytometry bioinformatics
single-cell
flow-cytometry
updated 12 weeks ago by
Ram
39k • written 9.1 years ago by
Ahill
★ 1.9k
0
votes
1
reply
2.5k
views
Tutorial:
Getting the lineage of an organism from NCBI taxonomy data
biosql
python
taxonomy
updated 11 weeks ago by
Ram
39k • written 4.8 years ago by
vimalkvn
▴ 310
76
votes
13
replies
14k
views
12 follow
Tutorial:
Exploring cancer mutation data portals
TCGA
Cancer
ICGC
Data-Portal
Mutation
updated 19 months ago by
Ram
39k • written 9.0 years ago by
Malachi Griffith
19k
6
votes
10
replies
4.4k
views
Tutorial:
Differentially methylated regions: Easy & Fast Identification and ANnoTation
DMR
dna-methylation
updated 11 weeks ago by
Ram
39k • written 5.3 years ago by
dec986
▴ 360
43
votes
6
replies
11k
views
Tutorial:
Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
ensembl
maf
tcga
vcf
updated 12 weeks ago by
Ram
39k • written 9.3 years ago by
Cyriac Kandoth
5.9k
5
votes
3
replies
4.7k
views
Tutorial:
bam2rpkm by bedtools
bam
RNA-Seq
bedtools
rpkm
updated 10 weeks ago by
toxin08x
• 0 • written 5.6 years ago by
jmzeng1314
▴ 130
16
votes
11
replies
7.4k
views
Tutorial:
How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking
meta
how-to
documentation
11 weeks ago by
Ram
39k
45
votes
28
replies
7.3k
views
9 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
12 days ago by
Ram
39k
101
votes
6
replies
23k
views
6 follow
Tutorial:
Creating workflows with snakemake and conda
workflow
snakemake
conda
updated 11 weeks ago by
Ram
39k • written 4.7 years ago by
finswimmer
16k
18
votes
40
replies
16k
views
16 follow
Tutorial:
Easy way to run easily orthoMCL (Copy & paste)
all-v-all
orthomcl
updated 11 weeks ago by
Ram
39k • written 6.9 years ago by
Esaie
▴ 170
23
votes
4
replies
6.4k
views
Tutorial:
Using EnrichedHeatmap for visualization of NGS experiments
heatmap
chip-seq
atac-seq
EnrichedHeatmap
updated 11 weeks ago by
Ram
39k • written 3.8 years ago by
ATpoint
72k
15
votes
4
replies
4.2k
views
Tutorial:
RNASeq tutorial for gene differential expression analysis
Transcriptomics
bioconductor
RNA-Seq
R
updated 11 weeks ago by
Ram
39k • written 2.8 years ago by
Thind amarinder
▴ 310
26
votes
0
replies
2.1k
views
Tutorial:
Resources / databases for clinical interpretation of cancer variants
interpretation
cancer
annotation
variant
updated 11 weeks ago by
Ram
39k • written 3.6 years ago by
Malachi Griffith
19k
10
votes
1
reply
2.0k
views
Tutorial:
introduce a tool for fast identification of SARS-CoV-2 and other microbes from sequencing data
SARS-CoV-2
fastv
COVID-19
updated 11 weeks ago by
Ram
39k • written 3.2 years ago by
chen
★ 2.4k
60
votes
52
replies
40k
views
23 follow
Tutorial:
Creating Interactive Volcano Plots with R and Plot.ly
plotly
R
volcano-plot
updated 11 weeks ago by
Ram
39k • written 6.7 years ago by
steve
★ 3.3k
356 results • Page
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C: removing overrepresented sequences from rna-seq
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Answer: Peaks annotation on bacterial genome
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Maurice
• 0
Thank you for your kind reply! I have just a further question. Which is the difference between using annoPeaks and annotatePeaksinbatch wi…
Comment: Dada2 in Qiime2: losing reads during merging
by
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▴ 80
Thanks for the answer! I requested information from the lab. Indeed, a region was sequenced that does not overlap with such short reads o…
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by
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use_internal_data=TRUE the kegg analysis need read KEGG annotation online, so if your network is bad, the analysis maybe failed; …
Comment: CluserProfiler message "No gene can be mapped"
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13554221497
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use_internal_data=TRUE, add the params maybe can solve the problem. KEGG analysis need reading KEGG annotation online, so if your netw…
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> 'str' object has no attribute 'merge' It appears you are trying to merge file names rather than dataframes. You have to read in those f…
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I believe that the easiest option for paired-end data is to use `fastq-sample` from fastq-tools: ``` fastq-sample -n 5000000 pair_R1.fa…
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What makes you think everyone here is a "sir"?
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I also said that on this forum xD. But anyway, actually its probably not impossible. What I would do is first read through [the FAQ][1], …
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