13 days ago by
firestar
★
1.5k
1
vote
0
replies
188
views
10
votes
7
replies
801
views
Tutorial:
Sequence Alignment from Scratch with BWA
1
vote
1
reply
272
views
Tutorial:
Converting TSV file to VCF
updated 25 days ago by
Pierre Lindenbaum
152k
•
written 25 days ago by
barslmn
★
1.2k
77
votes
19
replies
68k
views
13 follow
194
votes
44
replies
67k
views
33 follow
updated 27 days ago by
Ram
37k
•
written 10.4 years ago by
Obi Griffith
20k
92
votes
105
replies
32k
views
25 follow
updated 6 days ago by
s.w.vanderlaan
▴
40
•
written 4.4 years ago by
Kevin Blighe
84k
68
votes
26
replies
24k
views
15 follow
updated 12 days ago by
Ram
37k
•
written 9.0 years ago by
Istvan Albert
96k
10
votes
3
replies
4.1k
views
updated 16 days ago by
Ram
37k
•
written 8.4 years ago by
Nowlan Freese
▴
860
94
votes
25
replies
31k
views
11 follow
Tutorial:
Fastq Quality Control Shootout
47
votes
19
replies
12k
views
8 follow
updated 26 days ago by
Ram
37k
•
written 9.9 years ago by
Istvan Albert
96k
Recent Votes
Recent Locations •
All
Malta, 1 minute ago
Japan, 2 minutes ago
Swansea, 2 minutes ago
Poland, 2 minutes ago
Bologna, 2 minutes ago
France, 2 minutes ago
Finland, 3 minutes ago
Recent Awards •
All
Popular Question to
Papyrus
★
2.3k
Guru to
Adrian Altenhoff
★
1.0k
Popular Question to
Sebastian Hesse
▴
320
Popular Question to
Omics data mining
▴
210
Popular Question to
choijamtsm
▴
50
Popular Question to
MboiTui
•
0
Popular Question to
MatthewP
★
1.2k
Recent Replies
Comment: Question on how to filter DESeq2 results correctly and use of the results functi
by
Frederik
•
0
Thanks alot :)
Comment: Is it possible to do bedtools multicov across the entire genome?
by
amy__
▴
50
Amazing, thank you so much!
BW,
Amy
Answer: Is it possible to do bedtools multicov across the entire genome?
by
GenoMax
125k
`mosdepth` ([**LINK**][1]) is an excellent/fast alternative.
[1]: https://github.com/brentp/mosdepth
Answer: Index with unmasked or masked in HISAT2
by
GenoMax
125k
Use `top level` file.
See [**README**][1] more information about other files you are referring to.
[1]: https://ftp.ebi.ac.uk/en…
Answer: Is it possible to do bedtools multicov across the entire genome?
by
Nicolas Rosewick
10k
Simply use then `bedtools genomecov` with `-d` parameter : https://bedtools.readthedocs.io/en/latest/content/tools/genomecov.html
Answer: How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
by
GenoMax
125k
Programs do not use all the threads/cores all the time. They will do so during appropriate part of the analysis. As long as you have enable…
Comment: Clustering and dynamic tree cutting
by
andres.firrincieli
3.1k
Help me to understand. Is this a clustering analysis of differentially expressed genes or an unsupervised clustering analysis (eg WGCNA)?
Answer: Obtaining every"Protein ID" from a genome in OMA
by
Adrian Altenhoff
★
1.0k
Dear Christy,
thanks for your interest in the OMA browser. indeed, there seems to be an issue with listing all the genes of a species. W…
Answer: Error, (in LoadSpliceMap) string to parse is too long
by
Adrian Altenhoff
★
1.0k
Dear Ziqing
this error seems to be related to the splicing information file of one of the genomes. Given that it worked previously, I as…
Comment: RNA Editing data from RNA-seq
by
i.sudbery
16k
RNA editing is detected by identifying differences between the DNA sequence and the RNAseq. If you compare your RNAseq data to the referen…
Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
by
i.sudbery
16k
DEXSeq is probably not the correct tool for what you are trying to do. If focuses of changes to which exons are included and which exclude…
Answer: How to use CAFE from Orthofinder Results
by
dariober
14k
I have been looking into something similar (maybe, not sure myself) and I didn't know about cafe. It looks good, thanks for bringing it up.…
Comment: Gene Set Enrichment Analysis after DESeq2
by
Lada
▴
10
HI Sreeraj,
I don't know what is your model organism. For humans, mouse, drosophila and similar stuff, I guess it's easy because you can …
Comment: Clustering and dynamic tree cutting
by
harish
•
0
I am very new to RNAseq analysis and clustering. Can you please elaborate on it, do you mean to say that Pearson correlation is not enough …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
•
0
I'm sorry. I was not aware that the .pvar file was where I had to look for the correct IDs. The .pvar file really does contain the IDs as "…
Traffic: 2053 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6