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10 results • Page
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Tutorial:
Analysis of Smart-Seq3 data with kallisto-bustools
single-cell
kallisto
transcriptomics
smart-seq3
pipeline
13 days ago by
firestar
★ 1.5k
10
votes
7
replies
801
views
Tutorial:
Sequence Alignment from Scratch with BWA
alignment
bwa
DNA
10 days ago by
barslmn
★ 1.2k
1
vote
1
reply
272
views
Tutorial:
Converting TSV file to VCF
vcf
preprocessing
frequency
updated 25 days ago by
Pierre Lindenbaum
152k • written 25 days ago by
barslmn
★ 1.2k
77
votes
19
replies
68k
views
13 follow
Tutorial:
How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
samtools
bcftools
htslib
Tutorial
updated 14 days ago by
jcurry01
• 0 • written 4.5 years ago by
otwtgin2010
▴ 530
194
votes
44
replies
67k
views
33 follow
Tutorial:
Analysing Microarray Data In Bioconductor
microarray-analysis
bioconductor
updated 27 days ago by
Ram
37k • written 10.4 years ago by
Obi Griffith
20k
92
votes
105
replies
32k
views
25 follow
Tutorial:
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Tutorial
1000
genomes
PCA
PLINK
updated 6 days ago by
s.w.vanderlaan
▴ 40 • written 4.4 years ago by
Kevin Blighe
84k
68
votes
26
replies
24k
views
15 follow
Tutorial:
How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
rna-seq
tutorial
Tutorial
updated 12 days ago by
Ram
37k • written 9.0 years ago by
Istvan Albert
96k
10
votes
3
replies
4.1k
views
Tutorial:
Video: Alternative Splicing and Primer Design
RNA-Seq
IGB
updated 16 days ago by
Ram
37k • written 8.4 years ago by
Nowlan Freese
▴ 860
94
votes
25
replies
31k
views
11 follow
Tutorial:
Fastq Quality Control Shootout
quality
fastq
trimming
qc
tutorial
Tutorial
updated 6 days ago by
Ram
37k • written 10.4 years ago by
Istvan Albert
96k
47
votes
19
replies
12k
views
8 follow
Tutorial:
Fastq Quality Control And Reporting - Aka Fastqc Versus The New Contenders
quality-control
fastqc
updated 26 days ago by
Ram
37k • written 9.9 years ago by
Istvan Albert
96k
10 results • Page
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Recent Votes
Comment: Question on how to filter DESeq2 results correctly and use of the results functi
Answer: Is it possible to do bedtools multicov across the entire genome?
Answer: Is it possible to do bedtools multicov across the entire genome?
Answer: Is it possible to do bedtools multicov across the entire genome?
Answer: Is it possible to do bedtools multicov across the entire genome?
Answer: Obtaining every"Protein ID" from a genome in OMA
A: How To Split A Multiple Fasta
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Papyrus
★ 2.3k
Guru
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Adrian Altenhoff
★ 1.0k
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▴ 320
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Recent Replies
Comment: Question on how to filter DESeq2 results correctly and use of the results functi
by
Frederik
• 0
Thanks alot :)
Comment: Is it possible to do bedtools multicov across the entire genome?
by
amy__
▴ 50
Amazing, thank you so much! BW, Amy
Answer: Is it possible to do bedtools multicov across the entire genome?
by
GenoMax
125k
`mosdepth` ([**LINK**][1]) is an excellent/fast alternative. [1]: https://github.com/brentp/mosdepth
Answer: Index with unmasked or masked in HISAT2
by
GenoMax
125k
Use `top level` file. See [**README**][1] more information about other files you are referring to. [1]: https://ftp.ebi.ac.uk/en…
Answer: Is it possible to do bedtools multicov across the entire genome?
by
Nicolas Rosewick
10k
Simply use then `bedtools genomecov` with `-d` parameter : https://bedtools.readthedocs.io/en/latest/content/tools/genomecov.html
Answer: How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
by
GenoMax
125k
Programs do not use all the threads/cores all the time. They will do so during appropriate part of the analysis. As long as you have enable…
Comment: Clustering and dynamic tree cutting
by
andres.firrincieli
3.1k
Help me to understand. Is this a clustering analysis of differentially expressed genes or an unsupervised clustering analysis (eg WGCNA)?
Answer: Obtaining every"Protein ID" from a genome in OMA
by
Adrian Altenhoff
★ 1.0k
Dear Christy, thanks for your interest in the OMA browser. indeed, there seems to be an issue with listing all the genes of a species. W…
Answer: Error, (in LoadSpliceMap) string to parse is too long
by
Adrian Altenhoff
★ 1.0k
Dear Ziqing this error seems to be related to the splicing information file of one of the genomes. Given that it worked previously, I as…
Comment: RNA Editing data from RNA-seq
by
i.sudbery
16k
RNA editing is detected by identifying differences between the DNA sequence and the RNAseq. If you compare your RNAseq data to the referen…
Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
by
i.sudbery
16k
DEXSeq is probably not the correct tool for what you are trying to do. If focuses of changes to which exons are included and which exclude…
Answer: How to use CAFE from Orthofinder Results
by
dariober
14k
I have been looking into something similar (maybe, not sure myself) and I didn't know about cafe. It looks good, thanks for bringing it up.…
Comment: Gene Set Enrichment Analysis after DESeq2
by
Lada
▴ 10
HI Sreeraj, I don't know what is your model organism. For humans, mouse, drosophila and similar stuff, I guess it's easy because you can …
Comment: Clustering and dynamic tree cutting
by
harish
• 0
I am very new to RNAseq analysis and clustering. Can you please elaborate on it, do you mean to say that Pearson correlation is not enough …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
• 0
I'm sorry. I was not aware that the .pvar file was where I had to look for the correct IDs. The .pvar file really does contain the IDs as "…
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