Tutorial:
ChIP-Seq Analysis Tutorial
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13 days ago by
Milad
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3
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updated 6 weeks ago by
Ram
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written 11 months ago by
dare_devil
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1
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341
views
9 weeks ago by
firestar
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1.5k
10
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7
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1.1k
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Tutorial:
Sequence Alignment from Scratch with BWA
1
vote
1
reply
487
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Tutorial:
Converting TSV file to VCF
updated 11 weeks ago by
Pierre Lindenbaum
153k
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written 11 weeks ago by
barslmn
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1.4k
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425
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12 weeks ago by
Dr.Animo
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12 weeks ago by
Novogene
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28 days ago by
Novogene
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1
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3
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421
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82
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21
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13 follow
updated 5 weeks ago by
cmdcolin
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2.9k
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written 4.7 years ago by
otwtgin2010
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540
72
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60
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23k
views
16 follow
updated 6 weeks ago by
Ram
38k
•
written 5.6 years ago by
Kevin Blighe
84k
82
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28
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28k
views
19 follow
updated 6 weeks ago by
Ram
38k
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written 7.1 years ago by
Obi Griffith
20k
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4.7k
views
6 follow
1
vote
2
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547
views
1
vote
0
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315
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Tutorial:
Making LDA Score plot
6 months ago by
rohitsatyam102
▴
690
130
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123
replies
29k
views
23 follow
Tutorial:
Survival analysis with gene expression
updated 7 days ago by
krushnach80
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1.1k
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written 4.4 years ago by
Kevin Blighe
84k
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13
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82
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21
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15k
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Tutorial:
Gene Set Enrichment Analysis
updated 20 days ago by
Ram
38k
•
written 2.5 years ago by
Hamid Ghaedi
2.9k
27
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0
replies
2.7k
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Tutorial:
Building Docker images
8 months ago by
ATpoint
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1
vote
1
reply
19k
views
updated 8 months ago by
Vincent Laufer
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2.5k
•
written 8 months ago by
kodwings
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83
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34
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15k
views
21 follow
80
votes
2
replies
53k
views
updated 4 weeks ago by
Ram
38k
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written 9.8 years ago by
Eric Normandeau
11k
15
votes
5
replies
11k
views
6 follow
Tutorial:
Easy way to do GO enrichment in R
37
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8
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9.3k
views
10 follow
Tutorial:
Methylation Analysis Tutorial in R_part1
updated 20 days ago by
Ram
38k
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written 2.5 years ago by
Hamid Ghaedi
2.9k
3
votes
2
replies
1.4k
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Tutorial:
Running fastq_screen on your data
12 months ago by
rohitsatyam102
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690
7
votes
14
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2.1k
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6 follow
updated 5 months ago by
Angelina_G
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0
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written 13 months ago by
thehung92phuyen
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73
votes
14
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14k
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15 follow
Tutorial:
List Of Bioinformatics Books
25
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13
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6.8k
views
9 follow
updated 14 months ago by
liorglic
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1.2k
•
written 17 months ago by
Istvan Albert
97k
3
votes
13
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9.4k
views
13
votes
9
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4.1k
views
Tutorial:
TCGA transcriptome data to R (DESeq2)
updated 9 months ago by
dk0319
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40
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written 16 months ago by
Barry Digby
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1.1k
2
votes
0
replies
1.1k
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updated 7 weeks ago by
ATpoint
70k
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written 15 months ago by
sinha.shriprakash
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7.9k
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12
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4
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4.4k
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Tutorial:
*FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
updated 7 weeks ago by
Ram
38k
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written 2.1 years ago by
garden_giessen
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120
26
votes
10
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59k
views
9 follow
updated 20 days ago by
Ram
38k
•
written 2.0 years ago by
Nitin Narwade
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1.3k
6
votes
2
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2.5k
views
6 months ago by
Hamid Ghaedi
2.9k
41
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6
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18k
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Tutorial:
Greatly speed up conda by using mamba
updated 14 months ago by
cameron.cowan
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40
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written 2.0 years ago by
rpolicastro
11k
144
votes
68
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43k
views
18 follow
updated 16 days ago by
Ram
38k
•
written 5.4 years ago by
Kevin Blighe
84k
15
votes
2
replies
1.4k
views
updated 5 months ago by
brunobsouzaa
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810
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written 18 months ago by
nhaus
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280
194
votes
44
replies
68k
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33 follow
updated 11 weeks ago by
Ram
38k
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written 10.5 years ago by
Obi Griffith
20k
6
votes
2
replies
1.0k
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19 months ago by
Kevin Blighe
84k
0
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0
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897
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2
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0
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1.8k
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Tutorial:
Affymetrix HTA 2.0 id conversion
20 months ago by
Kevin Blighe
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Answer: Any tips in landing a bioinformatic job?
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Vincent Laufer
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Do you have a public facing github page (or equivalent) that provides examples of bioinformatics workflows you've created?
For myself, if …
Comment: Align miRNA library (small RNA-seq) without trimming
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Paola
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Hi Ming
Untrimmed reads have 76bp in average.
Answer: Align miRNA library (small RNA-seq) without trimming
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Ming Tommy Tang
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bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
Comment: Differences in RNAseq Variant Calling and Allele Specific Expression
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afei
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Hi!
I'm also confused by this. And the site (https://gatkforums.broadinstitute.org/gatk/categories/gatk-support-forum) is closed. Have you …
Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
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rebeliscu
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Indeed, I thought the quality might be a factor. Still, given the information, it seems odd to me that that call was made.
Thanks for you…
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To generate a VCF file one would normally pipe the input of an `mpileup` command into an actual `call` command. For example:
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bcftools …
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Your assumption is correct - AlphaFold pTM has nothing to do with post-translational modifications. See [**here**][1].
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I had this issue today and was able to resolve it by changing the random seed Admixture uses by adding `-s time` (which sets the random see…
Answer: Total No of Genes of GENCODE Release 43
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ahmad
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The following is the correct code
gtf_43<-rtracklayer::import('gencode.v43.primary_assembly.annotation.gtf')
dtgtf_43<-data.frame(gtf_4…
Comment: Total No of Genes of GENCODE Release 43
by
ahmad
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Hello,
thanks for replying, by mistake I paste the wrong code. the following is the corrected
gtf_43<-rtracklayer::import('gencode.v43…
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I have no idea what that is besides a bunch of jumbled sequences. You'll need look up the structure of the reads / library from wherever yo…
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First thing: kallisto cannot interface with UMI-tools (kallisto doesn't use read headers and therefore you're stuck with "the kallisto way"…
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There is some somatic SV study on these HCC1395: https://doi.org/10.1186/s13059-022-02816-6.
There is also a CNA preprint from years ago b…
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Just in case things are hard to find, for the WGS/WES, these are the data (what the file names mean: https://sites.google.com/view/seqc2/ho…
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Hmm, not sure why `subset` doesn't match to '0:CD8 T cell' but maybe it's the ":"?
An alternative option is the following:
```
idx <- whi…
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