Tutorial:
introduce a tool for fast identification of SARS-CoV-2 and other microbes from sequencing data
10
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reply
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40k
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23 follow
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18
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7.5k
views
10 follow
Tutorial:
Create de novo repeat library
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0
replies
897
views
Tutorial:
BrainArray CDF, annotation, etc
updated 11 weeks ago by
Ram
39k
•
written 2.7 years ago by
Kevin Blighe
85k
12
votes
0
replies
2.2k
views
updated 11 weeks ago by
Ram
39k
•
written 2.8 years ago by
rpolicastro
12k
76
votes
70
replies
16k
views
18 follow
updated 11 weeks ago by
Ram
39k
•
written 5.3 years ago by
Kevin Blighe
85k
1
vote
1
reply
1.1k
views
updated 11 weeks ago by
Ram
39k
•
written 2.8 years ago by
opheevallee
•
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4
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3
replies
4.0k
views
4
votes
1
reply
1.1k
views
updated 11 weeks ago by
Ram
39k
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written 2.8 years ago by
sdsubaru33
▴
40
3
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0
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3.0k
views
Tutorial:
Sorting GFF/GTF files
20
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6
replies
5.0k
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Tutorial:
Open Targets and programmatic access
2
votes
2
replies
1.6k
views
updated 11 weeks ago by
Ram
39k
•
written 2.9 years ago by
Arup Ghosh
3.2k
12
votes
5
replies
1.9k
views
Tutorial:
FASTA file split
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0
replies
1.4k
views
updated 11 weeks ago by
Ram
39k
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written 3.0 years ago by
brian.fristensky
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450
0
votes
0
replies
829
views
updated 11 weeks ago by
Ram
39k
•
written 3.0 years ago by
brian.fristensky
▴
450
2
votes
1
reply
1.3k
views
70
votes
26
replies
25k
views
15 follow
updated 3 months ago by
Ram
39k
•
written 9.3 years ago by
Istvan Albert
98k
59
votes
43
replies
19k
views
18 follow
20
votes
7
replies
5.7k
views
updated 11 weeks ago by
Ram
39k
•
written 4.6 years ago by
ahmad mousavi
▴
750
4
votes
0
replies
1.5k
views
12
votes
1
reply
5.0k
views
Tutorial:
scRNA-seq CITE-seq-count bioinformatics
updated 11 weeks ago by
Ram
39k
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written 3.2 years ago by
colindaven
4.8k
10
votes
4
replies
9.5k
views
updated 11 weeks ago by
Ram
39k
•
written 3.9 years ago by
colindaven
4.8k
0
votes
0
replies
1.0k
views
Tutorial:
Training GeneMark-EP+ ab-initio tool
2
votes
1
reply
2.6k
views
updated 11 weeks ago by
Ram
39k
•
written 3.3 years ago by
Asad Prodhan
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5
votes
0
replies
2.8k
views
Tutorial:
How to run CWL with Nextflow
5
votes
2
replies
2.0k
views
updated 11 weeks ago by
Ram
39k
•
written 4.4 years ago by
linuxborg2
▴
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50
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3
replies
4.2k
views
19
votes
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6.1k
views
8 follow
Tutorial:
Interactive Perl Learning
277
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39
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168k
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29 follow
64
votes
26
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12k
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7 follow
Tutorial:
Parallel processing in R
updated 11 weeks ago by
Ram
39k
•
written 5.7 years ago by
Kevin Blighe
85k
34
votes
15
replies
5.3k
views
6 follow
updated 11 weeks ago by
Ram
39k
•
written 4.0 years ago by
Shicheng Guo
★
9.3k
20
votes
4
replies
2.3k
views
Tutorial:
Bash One-liners collection on Github
updated 11 weeks ago by
Ram
39k
•
written 4.1 years ago by
nim.1111.ou
▴
180
14
votes
7
replies
5.6k
views
2
votes
0
replies
4.0k
views
0
votes
0
replies
924
views
updated 11 weeks ago by
Ram
39k
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written 4.0 years ago by
Shicheng Guo
★
9.3k
16
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11
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13k
views
7 follow
10
votes
5
replies
19k
views
Tutorial:
Y-DNA and mtDNA Haplogroup Predictor
updated 11 weeks ago by
Ram
39k
•
written 4.9 years ago by
Shicheng Guo
★
9.3k
34
votes
15
replies
18k
views
12 follow
6
votes
3
replies
4.1k
views
0
votes
0
replies
945
views
Tutorial:
Introduction to Gen3 Webinar
0
votes
1
reply
1.2k
views
updated 11 weeks ago by
Ram
39k
•
written 5.3 years ago by
helgasaraswati
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4
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2
replies
3.3k
views
28
votes
4
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3.9k
views
Tutorial:
Modern Statistics for Modern Biology
updated 11 weeks ago by
Ram
39k
•
written 4.4 years ago by
Jean-Karim Heriche
26k
60
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6
replies
9.0k
views
4
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0
replies
686
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5
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2
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Tutorial:
NCBI submissions: SRA and TSA
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32
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4
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6.6k
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58
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37k
views
15 follow
Tutorial:
Protocol To Downlad TCGA Data From GDC
updated 11 weeks ago by
Ram
39k
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written 6.9 years ago by
Shicheng Guo
★
9.3k
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Recent Replies
Comment: Help with running ATAC using Encode pipeline
by
Chris
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Sure, here is my json file, I have 8 fastq files:
{
"atac.title" : “atac)”,
"atac.description" : “Encode”,
…
Comment: Differential protein expression analysis
by
dsull
★
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Yes, you need to log-transform.
I've had a good experience using limma for proteomics analyses (limma uses a moderated t-test).
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Never mind. Someone had put all the 16S files into the ITS folder and vice versa. After using the 16S dada2 pipeline on the actual 16S file…
Comment: Getting Pairwise Sequence Alignment Score With Biopython
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Dear Alexander,
to answer 2) first: This is just a fasta file that you can obtain essentially from every multiple sequence alignment soft…
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ATpoint
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Batches for what? Processing/sequencing, what data are we talking about? If this is indeed paired then you basically must keep samples of a…
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That's a really good question. Short version: not much to my knowledge, aside from looking at it, or filtering it (as it's a PAF like forma…
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i.sudbery
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BTW - Most TCGA cancer types do have normals amoungst the samples.
Comment: Alignment of case vs. control from different origin
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i.sudbery
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The assumption of these studies is that any batch effect within a batch affects both treatment and control equally, so that when you divide…
Answer: Stratified sample assignment for analysis
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Vincent Laufer
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First, you didn't tell us what kind of data you are working with. For arguments sake, I'll assume bulk RNA-seq.
Generally, your options …
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Ben_Ensembl
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You can use the ---show_ref_allele flag when running the VEP query. This will add the reference allele in the output and is mainly useful f…
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For R-users might be interesting to look at notebook "CAFA5: train set GO terms" https://www.kaggle.com/code/antoninadolgorukova/cafa5-trai…
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Alexander
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Thanks for sharing ! Just these days I am trying to wrap my mind on protein alignments.
I wonder: 1) "PID" in your post is "percentage o…
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You should read the [cellranger documentation][1] to understand how the analysis are performed. For example, it uses `graphclust` for clust…
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Hi,
I don't know if there are tools designed to predict pseudogenes, but If i understand correctly from your post you could predict all th…
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Maybe quite late, but in case other people are looking for this. Pairwise sequence identity can be easily calculated using basic python fun…
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