Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
353 results • Page
2 of 8
Sort: replies
Rank
Views
Votes
Replies
20
votes
14
replies
3.2k
views
Tutorial:
Video-tutorials: How to get started using EaSeq for interactive ChIP-seq data visualization and exploration (Windows)
ChIP-Seq
visualization
EaSeq
Tutorial
Windows
6.7 years ago by
Mads Lerdrup
▴ 460
30
votes
14
replies
14k
views
8 follow
Tutorial:
Installation of the MuSiC suite on unsupported Linux distributions
install
genome
music
linux
smg
Tutorial
6.3 years ago by
Cyriac Kandoth
5.8k
74
votes
14
replies
13k
views
15 follow
Tutorial:
List Of Bioinformatics Books
bioinformatics
tutorial
books
Tutorial
updated 4 months ago by
Ram
37k • written 9.7 years ago by
Medhat
9.5k
7
votes
14
replies
1.8k
views
6 follow
Tutorial:
Install required dependencies for GATK4 on remote server without root privilege
gatk
updated 3 months ago by
Angelina_G
• 0 • written 11 months ago by
thehung92phuyen
▴ 30
63
votes
13
replies
12k
views
11 follow
Tutorial:
Tutorial (How to analyze) on Whole Exome sequencing. Common Errors. Best Practices.
muTect
GATK
Picard
Exome
updated 11 months ago by
Ram
37k • written 8.2 years ago by
Chirag Nepal
★ 2.3k
17
votes
13
replies
1.6k
views
Tutorial:
Screen shots of text (please don't)!
meta
Forum
Tutorial
5.8 years ago by
Michael Dondrup
52k
74
votes
13
replies
65k
views
10 follow
Tutorial:
Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
r
cancer
classification
updated 3 months ago by
Ram
37k • written 9.2 years ago by
Nicholas Spies
★ 1.2k
3
votes
13
replies
8.8k
views
Tutorial:
Merging multiple vcf files into Single vcf file
vcf
merge
bcftools
Tutorial
written 3.9 years ago by
jaybee
▴ 140
24
votes
13
replies
5.7k
views
9 follow
Tutorial:
How to get FASTQ reads from the Short Read Archive (SRA)
fastq
sra
updated 12 months ago by
liorglic
★ 1.1k • written 15 months ago by
Istvan Albert
96k
76
votes
13
replies
14k
views
12 follow
Tutorial:
Exploring cancer mutation data portals
TCGA
Cancer
ICGC
Data-Portal
Mutation
updated 15 months ago by
Ram
37k • written 8.7 years ago by
Malachi Griffith
19k
31
votes
12
replies
26k
views
7 follow
Tutorial:
So What Does The Sequence Duplication Rate Really Mean In A Fastqc Report
Tutorial
qualitycontrol
fastqc
tutorial
updated 14 months ago by
Ram
37k • written 9.3 years ago by
Istvan Albert
96k
8
votes
12
replies
6.0k
views
Tutorial:
Create your own VPN to access work resources from home
VPN
OpenVPN
tinyproxy
Tutorial
6.7 years ago by
John
13k
16
votes
11
replies
7.2k
views
Tutorial:
How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking
meta
how-to
documentation
Tutorial
5 months ago by
Ram
37k
6
votes
11
replies
4.3k
views
6 follow
Tutorial:
Add count numbers to headers in a fasta file
genome
Blog
Tutorial
updated 21 months ago by
Alex Reynolds
34k • written 6.1 years ago by
wu.zhiqiang.1020
▴ 50
16
votes
11
replies
13k
views
7 follow
Tutorial:
retrieve full TCGA datasets from cBioportal with R
cBioportal
TCGA
data_retrieval
RNASeq
R
Tutorial
updated 3.7 years ago by
raffael.azevedo
▴ 30 • written 6.3 years ago by
TriS
★ 4.6k
12
votes
11
replies
6.5k
views
Tutorial:
How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
NCBI
SRA
Bioproject
BioSample
Tutorial
updated 5.5 years ago by
Lucila
▴ 20 • written 5.9 years ago by
CandiceChuDVM
★ 2.4k
24
votes
10
replies
55k
views
9 follow
Tutorial:
Installing an updated R version (>=4.0) using conda
Tutorial
error
software
R
updated 8 months ago by
Chih
• 0 • written 22 months ago by
Nitin Narwade
★ 1.3k
6
votes
10
replies
4.2k
views
Tutorial:
Differentially methylated regions: Easy & Fast Identification and ANnoTation
dna methylation
Tutorial
DMR
2.1 years ago by
dec986
▴ 340
9
votes
9
replies
3.6k
views
Tutorial:
Determine % of reference genome covered by aligned SAM/BAM
ngs
reference coverage
Tutorial
updated 5.4 years ago by
Devon Ryan
102k • written 5.4 years ago by
Kevin Blighe
84k
19
votes
9
replies
6.0k
views
8 follow
Tutorial:
Interactive Perl Learning
Tutorial
perl
tutorial
updated 16 months ago by
Ram
37k • written 9.6 years ago by
Medhat
9.5k
65
votes
9
replies
47k
views
7 follow
Tutorial:
Reference Assembly - Mapping Reads To A Reference Genome
mapping
samtools
bwa
reference
Tutorial
updated 16 months ago by
Ram
37k • written 9.6 years ago by
Joseph Hughes
★ 3.0k
40
votes
9
replies
10k
views
10 follow
Tutorial:
Resources for flow cytometry bioinformatics
single-cell
Tutorial
flow-cytometry
9 weeks ago by
Ahill
★ 1.9k
13
votes
9
replies
3.5k
views
Tutorial:
TCGA transcriptome data to R (DESeq2)
TCGA
GDC
DESeq2
updated 7 months ago by
dk0319
▴ 40 • written 14 months ago by
Barry Digby
★ 1.1k
8
votes
9
replies
10k
views
Tutorial:
Extracting subset of records from FASTA/FASTQ files based on exact/pattern matches of IDs (ONE-LINERS)
Tutorial
fasta
fastq
updated 16 months ago by
Ram
37k • written 8.8 years ago by
umer.zeeshan.ijaz
★ 1.8k
17
votes
9
replies
4.2k
views
Tutorial:
Finding the significance of the overlap between 2 or more gene sets using simulation in R.
R
tidyverse
gene
Tutorial
updated 16 months ago by
krushnach80
★ 1.1k • written 2.4 years ago by
rpolicastro
10k
31
votes
9
replies
22k
views
11 follow
Tutorial:
installing samtools with conda - overcoming two common errors
samtools
conda
Tutorial
updated 8 months ago by
Verónica
• 0 • written 2.5 years ago by
lavinia.gordon
▴ 140
23
votes
8
replies
4.8k
views
Tutorial:
A Practical (And Opinionated) Guide To Analyzing Human Methylation 450K Data
450K
methylation
updated 13 months ago by
Ram
37k • written 8.4 years ago by
brentp
24k
99
votes
8
replies
26k
views
8 follow
Tutorial:
Guide to TCGA data
TCGA
cancer
tools
RNA-Seq
clinical
Tutorial
updated 6.2 years ago by
ewre
▴ 250 • written 6.9 years ago by
Jordan Anaya
★ 1.1k
30
votes
8
replies
10k
views
7 follow
Tutorial:
How To Create A Bioinformatics Pipeline Using Spotify !
bioinformatics
pipeline
python
tutorial
Tutorial
updated 8 months ago by
Ram
37k • written 8.8 years ago by
Rad
▴ 800
81
votes
8
replies
7.7k
views
6 follow
Tutorial:
Current Topics in Genome Analysis 2014 (collection of educational lectures)
genomics
workshop
Tutorial
lectures
training
updated 8 months ago by
Ram
37k • written 8.6 years ago by
Malachi Griffith
19k
37
votes
8
replies
8.6k
views
10 follow
Tutorial:
Methylation Analysis Tutorial in R_part1
cancer
Tutorial
R
methylation
updated 8 weeks ago by
krushnach80
★ 1.1k • written 2.3 years ago by
Hamid Ghaedi
2.8k
13
votes
8
replies
2.4k
views
Tutorial:
Setting up Aspera Connect (ascp) on Linux and macOS
aspera
ascp
10 weeks ago by
ATpoint
68k
7
votes
8
replies
3.0k
views
Tutorial:
Determine if a transcription factor is bound with CENTIPEDE
ChIP-Seq
transcription-factor
DNase-Seq
CENTIPEDE
updated 7 weeks ago by
Ram
37k • written 7.6 years ago by
Kamil
★ 2.1k
10
votes
7
replies
751
views
Tutorial:
Sequence Alignment from Scratch with BWA
alignment
bwa
DNA
4 days ago by
barslmn
★ 1.2k
20
votes
7
replies
5.5k
views
Tutorial:
Showing up and down regulated GO and pathway using enrichR and ggplot2
RNA-Seq
R
ggplot2
Tutorial
2.8 years ago by
ahmad mousavi
▴ 740
16
votes
7
replies
12k
views
Tutorial:
Integrating VDJ sequencing data with Seurat
Seurat
clonotyping
VDJ
sc-RNAseq
Tutorial
updated 23 months ago by
Friederike
8.6k • written 3.6 years ago by
atakanekiz
▴ 310
10
votes
7
replies
13k
views
Tutorial:
Removing rows with duplicate values based on 1 or more key values - linux awk
awk
bash
duplicates
linux
Tutorial
updated 5.4 years ago by
Alex Reynolds
34k • written 5.4 years ago by
Kevin Blighe
84k
10
votes
7
replies
4.2k
views
Tutorial:
STARsolo config for 10x Chromium v1, v2, v3
STAR
STARsolo
10x
Chromium
Tutorial
updated 13 months ago by
GenoMax
125k • written 2.4 years ago by
Kevin Blighe
84k
14
votes
7
replies
5.4k
views
Tutorial:
Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
ChIP-Seq
R
HOMER
peaks
Tutorial
3.5 years ago by
steve
★ 3.3k
9
votes
7
replies
5.0k
views
Tutorial:
ClusterProfiler A software for functional enrichment of differentially expressed genes- A tutorial
Software
clusterProfiler
Tool
rna-seq
tool
updated 4 months ago by
Shubham
• 0 • written 23 months ago by
Novogene
▴ 210
48
votes
7
replies
10k
views
7 follow
Tutorial:
Genome Assembly Review Papers
papers
assembly
tutorial
Tutorial
updated 10.0 years ago by
lh3
33k • written 10.4 years ago by
Istvan Albert
96k
8
votes
7
replies
7.6k
views
Tutorial:
Getting Cegma/Genewise To Work On Centos, Rhel
centos
genewise
rhel
cegma
updated 12 months ago by
Ram
37k • written 9.2 years ago by
Adrian Pelin
★ 2.6k
67
votes
6
replies
24k
views
7 follow
Tutorial:
Rna-Seq Review Papers
papers
rna-seq
tutorial
Tutorial
updated 7.0 years ago by
Art_SG
• 0 • written 10.4 years ago by
Istvan Albert
96k
41
votes
6
replies
16k
views
Tutorial:
Greatly speed up conda by using mamba
software
updated 12 months ago by
cameron.cowan
▴ 40 • written 22 months ago by
rpolicastro
10k
60
votes
6
replies
8.8k
views
Tutorial:
Minimum Standards For Bioinformatics Command Line Tools
command-line
tools
bioinformatics
Tutorial
updated 11 weeks ago by
Ram
37k • written 9.5 years ago by
Medhat
9.5k
41
votes
6
replies
11k
views
Tutorial:
Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
maf
vcf
ensembl
tcga
somatic
Tutorial
2.1 years ago by
Cyriac Kandoth
5.8k
13
votes
6
replies
5.1k
views
Tutorial:
Trim & align paired-end reads in a single pass
trim
align
paired-end fastq
pipe
Tutorial
6.6 years ago by
dariober
14k
11
votes
6
replies
4.5k
views
Tutorial:
sharing some naive codes for microarray normalization in R with whom are too new in R alike me
R
updated 6 months ago by
Ram
37k • written 7.0 years ago by
fi1d18
★ 4.1k
29
votes
6
replies
21k
views
Tutorial:
Transforming And Manipulating Color Space Reads
conversion
solid
updated 4 months ago by
Ram
37k • written 10.8 years ago by
Istvan Albert
96k
31
votes
6
replies
8.0k
views
Tutorial:
A simple tutorial for a complex ComplexHeatmap
complexheatmap
clustering
arthritis
pam
Tutorial
17 months ago by
Kevin Blighe
84k
353 results • Page
2 of 8
Recent Votes
Answer: Looking for a tool which provides mapping quality score distributions from BAM f
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
Answer: mirbase does not have miRNA annotation of my species, what are the alternatives?
Answer: Gviz python alternative
Answer: Gviz python alternative
Answer: Annotating snps with gene information
Comment: Plotting Correlation matrix
Recent Locations •
All
United States,
just now
Hong Kong,
5 minutes ago
Finland,
11 minutes ago
United States,
12 minutes ago
Canada,
15 minutes ago
Canada,
24 minutes ago
India,
24 minutes ago
Recent Awards •
All
Scholar
to
cmdcolin
★ 2.8k
Teacher
to
swbarnes2
13k
Popular Question
to
WUSCHEL
▴ 660
Scholar
to
jared.andrews07
★ 14k
Popular Question
to
mk
▴ 270
Scholar
to
LChart
1.8k
Scholar
to
chrchang523
9.9k
Recent Replies
Answer: Can someone help me search the minimal value of a two column csv file with a sin
by
seidel
10k
You want the minimum value of the second column of a csv file? You could use `sort` like so: cat foo.txt 0.24380519999999706,4…
Answer: Python Dictionary of Primer3-py Primer Designs
by
barslmn
★ 1.2k
You're so close. You can simply loop over sequence dictionaries like you did with the `design_output` and check if the keys with `startswit…
Comment: Unable to install clusterProfiler on Mac M1
by
GenoMax
125k
Have you installed `Xcode` and the command line tools that go with? If not you will need to install those.
Answer: SRA taxonomy analysis
by
Steve
• 0
Thanks @genomax I created an aws glue crawler to pull the data from s3://sra-pub-metadata-us-east-1/sra_tax_analysis_tool/ I wonder if it …
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
by
demoraesdiogo2017
▴ 80
thanks! however, shouldn't it also have a gtf/gff file with the annotations?
Comment: Getting a VCF file from plink .bed, .fam and .bim files
by
hi.there
• 0
Thanks Ram. Yes. I have read all of this documentation before. --file and --bfile. I have actually tried doing the complete liftover be…
Answer: SRA taxonomy analysis
by
GenoMax
125k
This data may only be available using `BigQuery` for [**SRA in cloud**][1]. For more information on querying: https://www.ncbi.nlm.nih.g…
Comment: MesKit error message - Join columns must be present in data.
by
CH1374
• 0
column names for the maf are: [1] "Hugo_Symbol" "Chromosome" "Start_Position" [4] "End_Position" "Variant_Classification" "Variant_Type" [7…
Answer: scaffold assembly inro chromosomal assembly using reference genome
by
samuel.a.odonnell
▴ 450
Have a look at ragtag and ragout. I use ragout for smaller assemblies (~20 Mb and less) and ragtag for larger genomes.
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl
by
Ram
37k
I've been meaning to work on a Biostars-specific code formatting manual for a while now but the basic is pretty simple: You can use backtic…
Comment: Multiline Fasta To Single Line Fasta
by
Onur
• 0
Thank you it's also worked for me too. Best,
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl
by
Estefania
▴ 10
Thanks Ram. Could you point to a manual on how to make the post look like yours? I just copy-pasted my R script and this is how it shows in…
Comment: extracting input files form Seurat
by
rasing02
• 0
Thank you jared.andrews07
Comment: extracting input files form Seurat
by
rasing02
• 0
Yes, I just need the input data so that investigators can use tools other than R to visualize the data in form of viloin plots or feature p…
Comment: Downloading 450k methylation data from GEO
by
GenoMax
125k
I don't think they have provided processed data as a single upload.
Traffic: 1534 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6