updated 9 days ago by
psb7
▴
20
•
written 5.6 years ago by
Kevin Blighe
87k
98
votes
106
replies
46k
views
26 follow
49
votes
30
replies
11k
views
13 follow
updated 20 days ago by
Istvan Albert
100k
•
written 8.1 years ago by
Ram
43k
85
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 10 hours ago by
Gordon
•
0
•
written 3.5 years ago by
Hamid Ghaedi
3.2k
10
votes
6
replies
4.1k
views
updated 22 days ago by
Ram
43k
•
written 6.2 years ago by
Kevin Blighe
87k
0
votes
0
replies
27
views
Tutorial:
DNA Methylation: Sequencing Techniques
0
votes
0
replies
195
views
Tutorial:
Parsing HMMER output
Recent Votes
Recent Locations •
All
France/Nantes/Institut du Thorax - INSERM UMR1087, just now
United States, just now
United Kingdom, just now
Belgium, 1 minute ago
United Kingdom, 2 minutes ago
United Kingdom, 6 minutes ago
Norway, 8 minutes ago
Recent Awards •
All
Popular Question to
carlopecoraro2
★
2.5k
Student to
manaswiniparija3
▴
40
Popular Question to
tomas4482
▴
390
Popular Question to
vinayjrao
▴
250
Recent Replies
Answer: 10x VDJ (TCR/BCR) BAM to fastq
by
GenoMax
141k
Looking at the information about the BAM file in the link included at the end of this sentence, it seems that the BAM file does not contain…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
Jacky
•
0
I got it, thank you for your response.
Answer: DEseq2
by
ATpoint
81k
The DESeq2 input is a numeric count matrix (or data.frame) with rows being genes/observations and columns being samples/cells/specimen. Ple…
Comment: How to add motifs in cellranger-arc reference?
by
Ehsan
•
0
Hi. Do you have any updates on what you ended up doing? I am encountering same issue, cannot really find a good TF motif database for zebra…
Comment: biomaRt error for different R version
by
manaswwm
▴
490
Wonderful, and thanks for tagging Mike!
For those who come back for this problem, the following seemed to work for me:
Downgrading `dbply…
Answer: Assume "yes" as the answer to any prompts with bioconda
by
Juke34
8.5k
From my experience using `biocontainers` base container no need to set `yes` installation is done without any command prompt, otherwise as …
Comment: SLURM submission problem: Indexing the Reference Genome is not done in STAR
by
Dave Carlson
★
1.7k
You're allocating 4 compute nodes (`#SBATCH -N 4`), but STAR can't actually make use of more than 1 compute node. You can increase the num…
Answer: Assume "yes" as the answer to any prompts with bioconda
by
Dave Carlson
★
1.7k
```conda install -y bioconda::packageX conda-forge::packageY``` should do what you're looking for.
Comment: Supergnova stuck in tutorial
by
Murat
•
0
Hi GenoMax,
Thank you for your advice. I sent an email to them and have already opened an issue on Github. Let see if there is any other so…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
me
▴
750
You can't. The data does not exist. UniProt only annotates where a lysine is know to be acetylated. There is no way that UniProt can know w…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
Jacky
•
0
Yes, that's what I meant.
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
Jacky
•
0
I'm sorry, I didn't explain it clearly. Below are my operational steps: I enter 'Triticum aestivum' in the search box and perform a search.…
Comment: SLURM submission problem: Indexing the Reference Genome is not done in STAR
by
n_navy
•
0
I add these parameters;
#SBATCH -N 4
#SBATCH --tasks=1
#SBATCH -c 4
#SBATCH --time=24:00:00
But it keeps giving error
Comment: RNA seq differential expression analysis
by
rrehimi
•
0
Thanks!
Could you please explain the DEseq2 method using Galaxy step by step?
Input files?
Answer: Korean reference file
by
colindaven
6.3k
Is is this one - KOREF ? There might be multiple versions. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294231/
If it is, then take that…
Traffic: 2611 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6