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Tutorial: Principal Component Analysis (PCA ON T-BIOINFO)
RNA-Seq next-gen
updated 15 days ago by 39k • written 5.0 years ago by ▴ 340
0
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0
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2.8k
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Tutorial: Normality Test For JB (Jarque Bera) Test R Commander
Jarque-Bera-Test R-Commander
updated 21 days ago by 39k • written 5.5 years ago by ▴ 10
0
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0
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2.0k
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Tutorial: Transforming (Transformation) Data LN, Log, SQRT In R Commander
R
updated 21 days ago by 39k • written 5.4 years ago by ▴ 10
1
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0
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1.5k
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Tutorial: Using Subversion to update /devel branch of Bioconductor package
bioconductor subversion
updated 24 days ago by 39k • written 5.8 years ago by ▴ 350
0
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0
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3.4k
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Tutorial: Park Test for Heteroskedasticity In R Commander
R Park-Test
updated 21 days ago by 39k • written 5.4 years ago by ▴ 10
0
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0
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1.3k
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Tutorial: MWD (Mackinnon, White And Davidson) In R
R
updated 21 days ago by 39k • written 5.4 years ago by ▴ 10
2
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0
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1.4k
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Tutorial: Webinar: Extracting research evidence from publications
text-mining ontology pubmed
updated 20 days ago by 39k • written 5.3 years ago by ▴ 60
5
votes
0
replies
2.0k
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Tutorial: Installing multiprocessor-capable MEME to work with a Slurm job scheduler environment
slurm meme parallel
updated 23 days ago by 39k • written 5.7 years ago by 35k
0
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0
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7.6k
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Tutorial: Multicollinearity VIF (Variance Inflation Factor) Analysis in Panel data EVIEWS 9
R eviews
updated 21 days ago by 39k • written 5.4 years ago by ▴ 10
59 results • Page 2 of 2
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Tools To Calculate Average Coverage For A Bam File?
Comment: conda: command not found: gatk.
Answer: Finding Enhancers using Genomation library
Comment: If I execute "AddOrReplaceReadGroups" on a sarted and duplicate-marked .bam fil
Answer: Extract variants/SNPs with T>G substitution from a VCF file
Comment: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
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Comment: Can I send my PyMol results to a web-page as a result for a submitted query? If by Aatif Hashmi • 0
Basically I only want to show bases with disulphide bonds. like imagine I have a disulphide bond at 68 cys residue along with 145 cys. I …
Answer: How do I specify the Recalibration_data.table for "PrintReads" in GATK 4.3, if t by Pierre Lindenbaum 155k
do you want ApplyBQSR "Apply base quality score recalibration " ? https://gatk.broadinstitute.org/hc/en-us/articles/360036856671-ApplyBQSR
Answer: target vs. bait BED files for Illumina WES by Sounkou-bioinfo • 0
Hi @jacorvar , did you find the answer to that question ?
Comment: ChatGPT optimized for bioinformatics questions by Dr William Klubinski ▴ 100
That's an excellent point. A significant number of students are engaged in academic misconduct due to the use of fabricated references and …
Comment: Filtering content in heatmap to highest values by Papyrus ★ 2.5k
You mean something like this? depends on how you define "top" row or column # Create example (it is a data.table) ListerTFHeat <- …
Comment: conda: command not found: gatk. by 666billgaytes ▴ 10
Could there be an issue with your OS? I find a lot of colleagues having problems with Mac OS and much less if none at all on Windows.
Comment: ChatGPT optimized for bioinformatics questions by Dr William Klubinski ▴ 100
Great initiative :D
Answer: Extract variants/SNPs with T>G substitution from a VCF file by 4galaxy77 2.7k
Use ```bcftools view``` with the `-i` flag for including variants. ``` bcftools view -i'REF=="T" & AlT == "G"' ```
Comment: A question about the raw RNA-seq processing workflow by Dr William Klubinski ▴ 100
Hi there, the `Segmentation fault (core dumped)` seems to be related to memory issues. I would check the `core dump` that has been created …
Comment: Ensembl vep singularity by Ben_Ensembl ★ 2.2k
Hi Kiran - there is a description of downloading and running VEP with Singularity 3.5+ in the following blog post: https://www.ensembl.inf…
Comment: conda: command not found: gatk. by bestone ▴ 20
Is there anyone who can help me with this?
Comment: conda: command not found: gatk. by bestone ▴ 20
oops I didn't know I was going to evaluate them there, thanks for the warning, now I will evaluate them all. pls, could you pls with this i…
Comment: conda: command not found: gatk. by Pierre Lindenbaum 155k
> how about all your previous questions ? take a time to validate the good answers
Comment: conda: command not found: gatk. by bestone ▴ 20
I was using gatk before, but conda env create -n gatk -f gatkcondaenv.yml didn't run this command, so I wanted to delete gatk and install t…
Comment: conda: command not found: gatk. by Pierre Lindenbaum 155k
how about all your previous questions ? take a time to validate the good answers (green mark on the left). https://www.biostars.org/p/9565…
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