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Recent Replies
Answer: 18S taxonomy assignment SILVA database formatting
by
antonioggsousa
2.8k
I'm not an expert on `awk`, but I tried the following and it seems to work. Instead of using the original downloaded file, give your latest…
Comment: 18S taxonomy assignment SILVA database formatting
by
mbuenner
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0
Thank you for editing the post and for your answer.
Sadly, the linked formatted database does not contain Fungi, e.g. when I grep 'Fungi'…
Comment: 18S taxonomy assignment SILVA database formatting
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antonioggsousa
2.8k
Please, whenever you need to add more information, just edit your original post and do not add answers below unless you found the solution …
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saamhasan55
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Hi, I know this is an old thread, but I am encountering a similar problem. I am trying to do an msa for the cds sequences of 5 bumblebee sp…
Comment: 18S taxonomy assignment SILVA database formatting
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antonioggsousa
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Hi!
Please share first with us an example how the data looks like, the command-line you're running and the problem that you're getting. If…
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I may have stumbled on a solution for this problem. What I wanted was the SNPs or mutations in the VCF to be incorporated in the reference.…
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Thank you. I tried doing a pseudobulk analysis by doing the following:
I have 9 patient ids in a column `Patient` in my metadata, and a co…
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ATpoint
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It's a problem with the import of the text files (quant.sf) I would say. I cannot really debug the error itself, but can you try
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It's recommended to make a `Tool` post with usage examples that you can link to.
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Sample is nested with condition and with itself, meaning that each sample is either condition1 or 2, but for a paired design each sample wo…
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Software carpentry provides some good [introductory courses in Linux, Git, Python and R][1]. We are using these materials in our local soft…
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It is difficult for me to comment, as I am not too informed on your IT infrastructure. What I can say is that it would be better to run the…
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I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
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