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Tutorial:
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updated 24 days ago by
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updated 18 days ago by
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Joe
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You will need to share an exerpt of your fasta file and ID file. Most likely the IDs and the sequence file don't match for some reason, or …
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sperezilvia
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I just checked the link.. I'm not sure the "productive" sequences are the same for all cases
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Hello! I am having the same issue with merged samples of tetraploids... Any update for this? Would you share the link of your question in G…
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sperezilvia
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I tried without the -o parameter and I still got the same message as before and no sequences in the screen
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dilokef367
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Moving to vcfanno, which is more flexible. Thanks for your help.
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Ram
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I'm not sure that the default for the tool is - I always specify `-c none` explicitly because I want CHROM+POS+REF+ALT level uniques.
Comment: Match variants from RNAseq with known databases
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dilokef367
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The default is CHROM+POS+REF+ALT ? I'm looking here https://samtools.github.io/bcftools/bcftools.html#isec with no luck
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If you are already working with pRESTO, why are you trying to come up with your own custom filtering instead of using [the tool that is par…
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I've used the R package `TFEA.ChIP` but it feels a little limited and hard to explain to a general biology audience.
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A hacky solution would be to use `trace(gostplot, edit=TRUE)` and manually change the size of the points. Changes are temporary and not rep…
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But you say here you have a reference genome:
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Your concern is valid. bcftools has options to match CHROM & POS, CHROM+POS+REF and CHROM+POS+REF+ALT. You either need to ensure your varia…
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Yeah, I know, thank you. Just please understand since I'm working with data not published I can't talk a lot about it.. I know what I have …
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