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14 results • Page
1 of 1
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76
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19
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68k
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13 follow
Tutorial:
How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
samtools
bcftools
htslib
Tutorial
updated 6 days ago by
jcurry01
• 0 • written 4.5 years ago by
otwtgin2010
▴ 520
194
votes
44
replies
67k
views
33 follow
Tutorial:
Analysing Microarray Data In Bioconductor
microarray-analysis
bioconductor
updated 19 days ago by
Ram
37k • written 10.3 years ago by
Obi Griffith
20k
60
votes
52
replies
38k
views
23 follow
Tutorial:
Creating Interactive Volcano Plots with R and Plot.ly
R
plotly
volcano plot
Tutorial
updated 24 days ago by
Ram
37k • written 6.3 years ago by
steve
★ 3.3k
68
votes
26
replies
24k
views
15 follow
Tutorial:
How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
rna-seq
tutorial
Tutorial
updated 4 days ago by
Ram
37k • written 9.0 years ago by
Istvan Albert
96k
47
votes
19
replies
12k
views
8 follow
Tutorial:
Fastq Quality Control And Reporting - Aka Fastqc Versus The New Contenders
quality-control
fastqc
updated 18 days ago by
Ram
37k • written 9.9 years ago by
Istvan Albert
96k
10
votes
3
replies
4.1k
views
Tutorial:
Video: Alternative Splicing and Primer Design
RNA-Seq
IGB
updated 8 days ago by
Ram
37k • written 8.4 years ago by
Nowlan Freese
▴ 860
22
votes
1
reply
2.9k
views
Tutorial:
Introduction To R Course Materials Available
R
updated 25 days ago by
Ram
37k • written 10.8 years ago by
Sean Davis
26k
3
votes
0
replies
1.8k
views
Tutorial:
Live webinar on 25 June: Copy Number Detection in Inherited Disorders and Somatic Cancer
copy-number-analysis
strand-ngs
cnv
DNA-seq
tumor
updated 25 days ago by
Ram
37k • written 7.6 years ago by
Genomics
▴ 70
0
votes
0
replies
1.7k
views
Tutorial:
Data Management and Collaboration in GeneSpring Suite of Products - An Overview and Demo
microarray
proteomics
genomics
updated 25 days ago by
Ram
37k • written 7.6 years ago by
Genomics
▴ 70
10
votes
7
replies
741
views
Tutorial:
Sequence Alignment from Scratch with BWA
alignment
bwa
DNA
2 days ago by
barslmn
★ 1.2k
0
votes
0
replies
409
views
Tutorial:
GEO Data Mining (II) - Differential gene expression analysis and visualization with complete code sharing
geo
mining
differential
data
expression
RNA-Seq
gene
R
29 days ago by
Novogene
▴ 210
1
vote
1
reply
247
views
Tutorial:
Converting TSV file to VCF
vcf
preprocessing
frequency
updated 17 days ago by
Pierre Lindenbaum
152k • written 17 days ago by
barslmn
★ 1.2k
1
vote
0
replies
212
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
rRNA
RNAmmer
Annotation
Genome
24 days ago by
Dr.Animo
▴ 40
1
vote
0
replies
144
views
Tutorial:
Analysis of Smart-Seq3 data with kallisto-bustools
single-cell
kallisto
transcriptomics
smart-seq3
pipeline
4 days ago by
firestar
★ 1.5k
14 results • Page
1 of 1
Recent Votes
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
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Recent Awards •
All
Popular Question
to
tianshenbio
▴ 160
Popular Question
to
maxdlf12
• 0
Teacher
to
Pierre Lindenbaum
152k
Popular Question
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LDT
▴ 220
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Michael Dondrup
52k
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timothy.kirkwood
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Recent Replies
Answer: trainGlimmerHMM Error while training a genome
by
congliu37
• 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File?
by
Jeremy Leipzig
21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)?
by
Fabio Marroni
★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism
by
Rob
▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers
by
Pierre Lindenbaum
152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence
by
vvasta
• 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation?
by
Fabio Marroni
★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2
by
Fabio Marroni
★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file**
by
Pierre Lindenbaum
152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4
by
Pierre Lindenbaum
152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file
by
Neel
▴ 10
**Error: unable to open file or unable to determine types for file** Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
Answer: Anti-miRNA oligonuclotide identification
by
Asan Emirsale
• 0
You should find complementary sequences to make the miRNA silent. Should it be the Biopython or another tool. The solution might be as simp…
Comment: counting reads in a fastq file using a refrence fasta file
by
vaslanzadeh
▴ 10
Thanks, this works but it is extremely slow, is there any other alternatives?
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