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66k
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Tutorial: Analysing Microarray Data In Bioconductor
tutorial bioconductor microarray analysis tutorial Tutorial
updated 6 days ago by 37k • written 10.0 years ago by 20k
89
votes
19
replies
30k
views
12 follow
Tutorial: Machine Learning For Cancer Classification - Part 1 - Preparing The Data Sets
classification microarray expression bioconductor Tutorial
updated 23 hours ago by 37k • written 8.9 years ago by 20k
29
votes
6
replies
20k
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Tutorial: Transforming And Manipulating Color Space Reads
conversion solid
updated 6 days ago by 37k • written 10.4 years ago by 94k
53
votes
5
replies
14k
views
6 follow
Tutorial: Machine Learning For Cancer Classification - Part 4 - Plotting A Kaplan-Meier Curve For Survival Analysis
r
updated 23 hours ago by 37k • written 8.8 years ago by ★ 1.2k
63
votes
5
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6.5k
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10 follow
Tutorial: Informatics of RNA-Seq.
RNA-Seq next-gen Tutorial
updated 5 days ago by 37k • written 7.2 years ago by 12k
11
votes
28
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3.6k
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6 follow
Tutorial: gene set filter/selection for training ab initio annotation tools
gene geneset abinitio Tutorial genome
2 days ago by Juke34 7.2k
2
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1
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2.7k
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Tutorial: Scripting for Biology - Online Virtual Classroom-based Module
perl python GO class
updated 2 days ago by 37k • written 7.1 years ago by ★ 1.1k
7 results • Page 1 of 1
Recent Votes
Comment: Convert Gene Ensemble IDs to Gene Symbols on R
Answer: How to use biomart on R to convert Ensembl Gene IDs to Symbols?
Answer: How to use biomart on R to convert Ensembl Gene IDs to Symbols?
Answer: How to use biomart on R to convert Ensembl Gene IDs to Symbols?
Answer: How to use biomart on R to convert Ensembl Gene IDs to Symbols?
Answer: How to use biomart on R to convert Ensembl Gene IDs to Symbols?
Answer: How to use biomart on R to convert Ensembl Gene IDs to Symbols?
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Recent Replies
Comment: Convert Gene Ensemble IDs to Gene Symbols on R by Marco Pannone ▴ 460
So naturally, you are not going to see them associated with any "Gene Symbol" when doing the conversion from "Ensembl ID".
Comment: Convert Gene Ensemble IDs to Gene Symbols on R by Amr ▴ 70
So, they have no symbols, right?
Comment: Convert Gene Ensemble IDs to Gene Symbols on R by Marco Pannone ▴ 460
If you simply google some of them you can see that these Ensembl IDs refer to transcripts of non-coding regions and not annotated regions.
Answer: Convert Gene Ensemble IDs to Gene Symbols on R by Amr ▴ 70
'ENSG00000276171','ENSG00000269227','ENSG00000280816','ENSG00000236269','ENSG00000182109','ENSG00000261254','ENSG00000278882','ENSG00000273…
Comment: Convert Gene Ensemble IDs to Gene Symbols on R by Marco Pannone ▴ 460
Can you give an example? It might be pseudogenes or transcripts not currently annotated.
Comment: How to add line breaks before each ">" header line in fasta file by Pierre Lindenbaum 149k
that will work ... most of the time :-D https://nsaunders.wordpress.com/2014/08/14/looking-for-in-all-the-wrong-places/ ``` > dbj|AB0475…
Comment: How to add line breaks before each ">" header line in fasta file by callmcgovern ▴ 10
This worked perfectly! Thanks
Comment: How to add line breaks before each ">" header line in fasta file by Marco Pannone ▴ 460
``` sed 's/>/\n&/g' file ```
Comment: Change of -t argument in featureCounts affecting annotation by Marco Pannone ▴ 460
I really like the quote! Just googled it, I did not know about it, but from now on I will definitely remember it. You are right, I will lo…
Comment: Change of -t argument in featureCounts affecting annotation by Mensur Dlakic ★ 20k
`When you have eliminated the impossible, whatever remains, however improbable, must be the truth.` You probably know the quote, or can fi…
Comment: Change of -t argument in featureCounts affecting annotation by Marco Pannone ▴ 460
Thanks for your reply. I have downloaded and tried two different .gtf files, one from Ensembl and one from Gencode, ending up having the sa…
Answer: Motifs and ELM database by Mensur Dlakic ★ 20k
Probability in this case is most likely a `p-value`, which is a probability that the observed similarity of the detected motif with your se…
Comment: Change of -t argument in featureCounts affecting annotation by Mensur Dlakic ★ 20k
I don't think any answer or comment here can substitute for you looking through the annotation file. Chances are that your assumption (gene…
Answer: Motifs and ELM database by Judit • 0
[MEME][1] is a tool for discovering motifs of protein or DNA sequence. [1]: https://meme-suite.org/meme/tools/meme
Comment: GenCodeMismatch in .sqn file, is there any solution? by Buffo ★ 1.9k
I'm using mac.table2asn (v1.26.643), and the problem was solved by adding the parent gene to the pseudo genes (I originally submitted just …
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