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117 results • Page 2 of 3
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81
votes
8
replies
7.7k
views
6 follow
Tutorial: Current Topics in Genome Analysis 2014 (collection of educational lectures)
genomics workshop Tutorial lectures training
updated 8 months ago by 37k • written 8.6 years ago by 19k
8
votes
7
replies
7.6k
views
Tutorial: Getting Cegma/Genewise To Work On Centos, Rhel
centos genewise rhel cegma
updated 12 months ago by 37k • written 9.2 years ago by ★ 2.6k
16
votes
11
replies
7.2k
views
Tutorial: How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking
meta how-to documentation Tutorial
5 months ago by Ram 37k
12
votes
0
replies
7.2k
views
Tutorial: Plot average methylation levels across TSS region
bedtools RRBS R methylation
updated 9 months ago by 37k • written 8.0 years ago by ★ 4.6k
63
votes
5
replies
6.6k
views
10 follow
Tutorial: Informatics of RNA-Seq.
next-gen RNA-Seq
updated 3 months ago by 37k • written 7.5 years ago by 12k
18
votes
21
replies
6.6k
views
10 follow
Tutorial: Create de novo repeat library
de-novo repeat Tutorial annotation
updated 7 weeks ago by ▴ 20 • written 3.2 years ago by 7.5k
26
votes
17
replies
6.5k
views
8 follow
Tutorial: virtualenv - running Python based software in isolation
python virtualenv
updated 4 months ago by 37k • written 8.5 years ago by 5.9k
8
votes
2
replies
6.2k
views
Tutorial: Troubleshooting issues with SURPI pipeline for pathogen identification from complex metagenomic NGS data.
metagenomics clinical-genomics
updated 12 months ago by 37k • written 8.2 years ago by 12k
14
votes
2
replies
6.0k
views
Tutorial: ChIP-seq analysis tutorial
Tutorials ChIP-Seq
updated 4 months ago by 37k • written 7.4 years ago by ★ 2.9k
41
votes
1
reply
5.8k
views
Tutorial: Basic normalization, batch correction and visualization of RNA-seq data
edger tutorial rna-seq
6 weeks ago by ATpoint 68k
34
votes
4
replies
5.5k
views
Tutorial: [Beginner] Introduction to bioinformatics file types
fastq fasta bed SAM
updated 11 weeks ago by 37k • written 7.5 years ago by ▴ 370
9
votes
7
replies
5.0k
views
Tutorial: ClusterProfiler A software for functional enrichment of differentially expressed genes- A tutorial
Software clusterProfiler Tool rna-seq tool
updated 4 months ago by • 0 • written 23 months ago by ▴ 210
34
votes
15
replies
4.7k
views
6 follow
Tutorial: How to do data cleaning for VCF genetic file
vcf Tutorial
updated 11 months ago by 37k • written 3.6 years ago by ★ 9.2k
12
votes
1
reply
4.7k
views
Tutorial: scRNA-seq CITE-seq-count bioinformatics
RNA-Seq CITE-seq-count Tutorial scRNA-seq
5 months ago by colindaven 4.4k
12
votes
1
reply
4.7k
views
Tutorial: RepSeq data processing and analysis
immunology tcr repseq sequencing repertoire
updated 3 months ago by 37k • written 7.5 years ago by 3.5k
13
votes
3
replies
4.6k
views
Tutorial: Video: Visualization of whole genome DNA methylation data in IGB
Bismark BS-Seq RNA-Seq IGB
updated 8 months ago by 37k • written 7.9 years ago by ▴ 860
12
votes
31
replies
4.5k
views
6 follow
Tutorial: gene set filter/selection for training ab initio annotation tools
gene geneset abinitio Tutorial genome
3 months ago by Juke34 7.5k
11
votes
6
replies
4.5k
views
Tutorial: sharing some naive codes for microarray normalization in R with whom are too new in R alike me
R
updated 6 months ago by 37k • written 7.0 years ago by ★ 4.1k
10
votes
3
replies
4.1k
views
Tutorial: Video: Alternative Splicing and Primer Design
RNA-Seq IGB
updated 10 days ago by 37k • written 8.4 years ago by ▴ 860
9
votes
0
replies
4.0k
views
Tutorial: Analysis of dbGaP data on the cloud
AWS dbGaP Cloud
updated 6 months ago by 37k • written 7.0 years ago by 19k
5
votes
1
reply
3.9k
views
Tutorial: Mini-tutorial: How to fix too-long sequence names in SyMAP
alignment
updated 6 weeks ago by 37k • written 7.6 years ago by 7.7k
6
votes
2
replies
3.6k
views
Tutorial: GATK method for filtering vcf lines using GT values at all or multisample level.
variant filtration vcf genotype genome Tutorial
11 months ago by kirannbishwa01 ★ 1.5k
13
votes
9
replies
3.5k
views
Tutorial: TCGA transcriptome data to R (DESeq2)
TCGA GDC DESeq2
updated 7 months ago by ▴ 40 • written 14 months ago by ★ 1.1k
1
vote
0
replies
3.5k
views
Tutorial: embarrassingly easy parallel in Python, Perl and R
parallel
updated 5 months ago by 37k • written 7.2 years ago by ▴ 70
9
votes
0
replies
3.4k
views
Tutorial: Video: Intro to All New Features in IGB 8.2
R paired-end IGB
updated 10 months ago by 37k • written 8.1 years ago by ▴ 860
21
votes
2
replies
3.3k
views
Tutorial: Extracting genomic feature sequences from GTF/GFF files with AGAT
extract GTF GFF sequence
updated 4 months ago by ▴ 40 • written 21 months ago by 7.5k
10
votes
2
replies
3.1k
views
Tutorial: How to find PubMed records where you were author (member) as part of a consortium
pubmed
updated 5 months ago by 37k • written 7.2 years ago by 20k
7
votes
8
replies
3.0k
views
Tutorial: Determine if a transcription factor is bound with CENTIPEDE
ChIP-Seq transcription-factor DNase-Seq CENTIPEDE
updated 7 weeks ago by 37k • written 7.6 years ago by ★ 2.1k
22
votes
1
reply
2.9k
views
Tutorial: Introduction To R Course Materials Available
R
updated 27 days ago by 37k • written 10.8 years ago by 26k
1
vote
0
replies
2.9k
views
Tutorial: Canadian Bioinformatics Workshops 2016 Series
Assembly SNP RNA-Seq ChIP-Seq alignment
updated 7 months ago by 37k • written 7.0 years ago by ▴ 30
1
vote
2
replies
2.8k
views
Tutorial: Standalone BLAST error: UnexpectedTagClassByte
software-error blast
updated 3 months ago by 37k • written 7.5 years ago by ▴ 10
2
votes
1
reply
2.7k
views
Tutorial: Scripting for Biology - Online Virtual Classroom-based Module
perl python GO class
updated 4 months ago by 37k • written 7.4 years ago by ★ 1.1k
15
votes
2
replies
2.7k
views
Tutorial: Introduction to bedtools.
bedtools tutorial Tutorial
updated 11 months ago by 37k • written 8.2 years ago by 11k
14
votes
2
replies
2.6k
views
Tutorial: Methylation Analysis Tutorial in R_part2
RNA-Seq R methylation Tutorial cancer
4 months ago by Hamid Ghaedi 2.8k
27
votes
0
replies
2.5k
views
Tutorial: Building Docker images
singularity docker container
6 months ago by ATpoint 68k
1
vote
0
replies
2.5k
views
Tutorial: How to auto-annotate sequences with the Genome Compiler service.
RNA-Seq genome sequence blast
updated 5 months ago by 37k • written 7.2 years ago by ▴ 40
8
votes
3
replies
2.4k
views
Tutorial: Free online interactive Ensembl training
ensembl training genome
updated 6 months ago by 37k • written 7.0 years ago by 23k
13
votes
8
replies
2.4k
views
Tutorial: Setting up Aspera Connect (ascp) on Linux and macOS
aspera ascp
10 weeks ago by ATpoint 68k
9
votes
0
replies
2.4k
views
Tutorial: Introduction to Next Generation Sequencing (Part 1)
polony emulsion-pcr next-gen-sequencing
updated 3 months ago by 37k • written 7.5 years ago by ▴ 90
0
votes
2
replies
2.4k
views
Tutorial: Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer' on 25 Feb
SNP cancer gene-regulation multiomics rna-seq
updated 9 months ago by 37k • written 8.0 years ago by ▴ 70
8
votes
17
replies
2.3k
views
Tutorial: Simple approach to RNA-seq (T-Bioinfo platform)
alignment next-gen-sequencing RNA-seq
updated 5 months ago by 37k • written 7.3 years ago by ▴ 340
0
votes
3
replies
2.3k
views
Tutorial: Automatic Primer Design
Assembly sequence
updated 5 months ago by 37k • written 7.2 years ago by ▴ 40
1
vote
0
replies
2.2k
views
Tutorial: Using wgsim to generate mate pair and single reads
wgsim
updated 5 months ago by 37k • written 7.3 years ago by ▴ 370
0
votes
0
replies
2.2k
views
Tutorial: Hands-on NGS analysis workshop in Bethesda, MD
NGS-Analysis
updated 3 months ago by 37k • written 7.5 years ago by • 0
12
votes
17
replies
2.2k
views
Tutorial: How to find the mapping percentages for data deposited in the Zaire ebolavirus bioproject from the 2014 outbreak
ebola bwa
updated 5 weeks ago by 37k • written 7.6 years ago by 96k
6
votes
2
replies
2.1k
views
Tutorial: Unsupervised clustering on gene expression data
gene RNA-seq expression clustering
4 months ago by Hamid Ghaedi 2.8k
11
votes
1
reply
2.0k
views
Tutorial: Dealing with nanopore fast5 files compressed with vbz
hdf5 nanopore fast5 vbz MinKNOW
updated 5 months ago by ★ 1.8k • written 12 months ago by 14k
1
vote
0
replies
1.8k
views
Tutorial: Visualizing protein annotations through ProtAnnot
RNA-Seq IGB protein-annotation
updated 5 months ago by 37k • written 7.1 years ago by ▴ 860
7
votes
14
replies
1.8k
views
6 follow
Tutorial: Install required dependencies for GATK4 on remote server without root privilege
gatk
updated 3 months ago by • 0 • written 11 months ago by ▴ 30
3
votes
0
replies
1.8k
views
Tutorial: Live webinar on 25 June: Copy Number Detection in Inherited Disorders and Somatic Cancer
copy-number-analysis strand-ngs cnv DNA-seq tumor
updated 27 days ago by 37k • written 7.7 years ago by ▴ 70
117 results • Page 2 of 3
Recent Votes
Answer: Looking for a tool which provides mapping quality score distributions from BAM f
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
Answer: mirbase does not have miRNA annotation of my species, what are the alternatives?
Answer: Gviz python alternative
Answer: Gviz python alternative
Answer: Annotating snps with gene information
Comment: Plotting Correlation matrix
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Recent Replies
Answer: Python Dictionary of Primer3-py Primer Designs by barslmn ★ 1.2k
You're so close. You can simply loop over sequence dictionaries like you did with the `design_output` and check if the keys with `startswit…
Comment: Unable to install clusterProfiler on Mac M1 by GenoMax 125k
Have you installed `Xcode` and the command line tools that go with? If not you will need to install those.
Answer: SRA taxonomy analysis by Steve • 0
Thanks @genomax I created an aws glue crawler to pull the data from s3://sra-pub-metadata-us-east-1/sra_tax_analysis_tool/ I wonder if it …
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives? by demoraesdiogo2017 ▴ 80
thanks! however, shouldn't it also have a gtf/gff file with the annotations?
Comment: Getting a VCF file from plink .bed, .fam and .bim files by hi.there • 0
Thanks Ram. Yes. I have read all of this documentation before. --file and --bfile. I have actually tried doing the complete liftover be…
Answer: SRA taxonomy analysis by GenoMax 125k
This data may only be available using `BigQuery` for [**SRA in cloud**][1]. For more information on querying: https://www.ncbi.nlm.nih.g…
Comment: MesKit error message - Join columns must be present in data. by CH1374 • 0
column names for the maf are: [1] "Hugo_Symbol" "Chromosome" "Start_Position" [4] "End_Position" "Variant_Classification" "Variant_Type" [7…
Answer: scaffold assembly inro chromosomal assembly using reference genome by samuel.a.odonnell ▴ 450
Have a look at ragtag and ragout. I use ragout for smaller assemblies (~20 Mb and less) and ragtag for larger genomes.
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl by Ram 37k
I've been meaning to work on a Biostars-specific code formatting manual for a while now but the basic is pretty simple: You can use backtic…
Comment: Multiline Fasta To Single Line Fasta by Onur • 0
Thank you it's also worked for me too. Best,
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl by Estefania ▴ 10
Thanks Ram. Could you point to a manual on how to make the post look like yours? I just copy-pasted my R script and this is how it shows in…
Comment: extracting input files form Seurat by rasing02 • 0
Thank you jared.andrews07
Comment: extracting input files form Seurat by rasing02 • 0
Yes, I just need the input data so that investigators can use tools other than R to visualize the data in form of viloin plots or feature p…
Comment: Downloading 450k methylation data from GEO by GenoMax 125k
I don't think they have provided processed data as a single upload.
Answer: extracting input files form Seurat by jared.andrews07 ★ 14k
You can get the data behind any of the plots easily enough: ``` p <- VlnPlot(Seurat_object, features = "X", group.by = "Names",split.by…
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