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408 results • Page
3 of 9
Sort: Views
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Views
Votes
Replies
3
votes
3
replies
8.7k
views
Tutorial:
High Speed Downloading of SRA, SAM and Fastq Files
fastq
sam
Aspera-Connect
sra
updated 10 months ago by
Ram
43k • written 6.3 years ago by
Wenhu_Cao
▴ 100
9
votes
0
replies
8.6k
views
Tutorial:
Installing And Running Ncbi Blast
blast
updated 13 months ago by
Ram
43k • written 12.0 years ago by
MSU course 2011
▴ 540
49
votes
1
reply
8.6k
views
Tutorial:
Basic normalization, batch correction and visualization of RNA-seq data
edger
RNA-seq
updated 13 months ago by
Ram
43k • written 3.5 years ago by
ATpoint
81k
20
votes
4
replies
8.6k
views
Tutorial:
DE analysis by edgeR
RNA-Seq
R
edgeR
updated 11 months ago by
Ram
43k • written 7.5 years ago by
zizigolu
★ 4.3k
81
votes
8
replies
8.5k
views
6 follow
Tutorial:
Current Topics in Genome Analysis 2014 (collection of educational lectures)
workshop
lectures
genomics
training
updated 12 months ago by
Ram
43k • written 9.8 years ago by
Malachi Griffith
19k
14
votes
0
replies
8.3k
views
Tutorial:
Video: ChIP-Seq Analysis and Visualization using Galaxy and IGB.
IGB
ChIP-Seq
Galaxy
MACS
RNA-Seq
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Nowlan Freese
▴ 860
8
votes
7
replies
8.3k
views
Tutorial:
Getting Cegma/Genewise To Work On Centos, Rhel
centos
genewise
rhel
cegma
updated 2.1 years ago by
Ram
43k • written 10.3 years ago by
Adrian Pelin
★ 2.6k
12
votes
5
replies
8.3k
views
Tutorial:
How To Install BioPerl Without Root Privileges in Ubuntu/Linxu
bioperl
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Shicheng Guo
★ 9.4k
16
votes
11
replies
8.2k
views
Tutorial:
How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking
meta
how-to
documentation
12 months ago by
Ram
43k
0
votes
0
replies
8.0k
views
Tutorial:
Multicollinearity VIF (Variance Inflation Factor) Analysis in Panel data EVIEWS 9
R
eviews
updated 10 months ago by
Ram
43k • written 6.2 years ago by
helgasaraswati
▴ 10
20
votes
2
replies
8.0k
views
Tutorial:
Creating a karyotype plot with genes using karyoploteR
karyoploteR
visualization
R
genome
updated 10 months ago by
Ram
43k • written 6.4 years ago by
bernatgel
★ 3.4k
12
votes
0
replies
7.8k
views
Tutorial:
Plot average methylation levels across TSS region
bedtools
RRBS
R
methylation
updated 23 months ago by
Ram
43k • written 9.2 years ago by
TriS
★ 4.7k
6
votes
1
reply
7.8k
views
Tutorial:
Expression Analysis Of Rna-Seq Experiments With Tophat And Cufflinks
tophat
RNA-seq
cufflinks
updated 13 months ago by
Ram
43k • written 11.9 years ago by
Istvan Albert
100k
42
votes
19
replies
7.8k
views
8 follow
Tutorial:
Designing Command-Line Interfaces (Clis) For Scientific Software
software
updated 13 months ago by
Ram
43k • written 11.1 years ago by
Daniel Standage
4.1k
32
votes
4
replies
7.8k
views
Tutorial:
Fast LD computation from VCF files using tomahawk
ld
snp
vcf
vcftools
bcftools
updated 12 months ago by
Ram
43k • written 5.4 years ago by
firestar
★ 1.6k
26
votes
17
replies
7.7k
views
8 follow
Tutorial:
virtualenv - running Python based software in isolation
python
virtualenv
updated 18 months ago by
Ram
43k • written 9.6 years ago by
Ian
6.0k
24
votes
4
replies
7.5k
views
Tutorial:
Using EnrichedHeatmap for visualization of NGS experiments
heatmap
chip-seq
atac-seq
EnrichedHeatmap
updated 12 months ago by
Ram
43k • written 4.6 years ago by
ATpoint
81k
6
votes
4
replies
7.4k
views
Tutorial:
Overlay Multiple Tracks In Ucsc Browser [Quick Minimal Tutorial]
visualization
ChIP-seq
RNA-seq
ucsc-genome-browser
bigwig
updated 13 months ago by
Ram
43k • written 11.0 years ago by
Sukhi Singh
11k
12
votes
11
replies
7.4k
views
Tutorial:
How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
NCBI
Bioproject
SRA
BioSample
updated 10 months ago by
Ram
43k • written 7.1 years ago by
CandiceChuDVM
★ 2.4k
60
votes
2
replies
7.3k
views
Tutorial:
Table Of Contents To All Review Paper Compilations On Biostar
papers
updated 13 months ago by
Ram
43k • written 11.6 years ago by
Istvan Albert
100k
64
votes
5
replies
7.2k
views
10 follow
Tutorial:
Informatics of RNA-Seq.
next-gen
RNA-Seq
updated 17 months ago by
Ram
43k • written 8.6 years ago by
GouthamAtla
12k
4
votes
2
replies
7.2k
views
Tutorial:
Analyzing Genomewide Association Study Data: A Tutorial Using Plink
plink
gwas
updated 13 months ago by
Ram
43k • written 11.9 years ago by
Istvan Albert
100k
15
votes
1
reply
7.1k
views
Tutorial:
A compilation of conversion tools for BED, SAM/BAM, psl, pslx, blast tabular and blast xml
psl
SAM
blast
BED
updated 10 months ago by
Ram
43k • written 6.4 years ago by
Joseph Hughes
★ 3.0k
5
votes
5
replies
6.9k
views
Tutorial:
use firehose_get to download TCGA data
tcga
RNA-Seq
updated 10 months ago by
Ram
43k • written 6.4 years ago by
jmzeng1314
▴ 130
16
votes
9
replies
6.9k
views
Tutorial:
TCGA transcriptome data to R (DESeq2)
TCGA
GDC
DESeq2
updated 21 months ago by
dk0319
▴ 70 • written 2.3 years ago by
Barry Digby
★ 1.3k
22
votes
10
replies
6.9k
views
Tutorial:
Finding the significance of the overlap between 2 or more gene sets using simulation in R.
tidyverse
gene
R
updated 12 months ago by
Ram
43k • written 3.6 years ago by
rpolicastro
13k
15
votes
2
replies
6.8k
views
Tutorial:
Genotype And Snp Calling Review Papers
snp
updated 13 months ago by
Ram
43k • written 11.6 years ago by
Istvan Albert
100k
2
votes
0
replies
6.8k
views
Tutorial:
How to - Install Python packages in a virtual environment (virtualenv)
ubuntu
cutadapt
virtualenv
python
windows
updated 10 months ago by
Ram
43k • written 6.3 years ago by
vimalkvn
▴ 320
23
votes
19
replies
6.8k
views
10 follow
Tutorial:
MutScan: Detect important mutations by scanning FastQ files directly
fastq
mutation
cancer
target
updated 11 months ago by
Ram
43k • written 7.5 years ago by
chen
★ 2.5k
21
votes
5
replies
6.7k
views
Tutorial:
Analysis of single-cell RNA-seq data
single-cell
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Geparada
★ 1.5k
8
votes
12
replies
6.7k
views
Tutorial:
Create your own VPN to access work resources from home
tinyproxy
OpenVPN
VPN
updated 11 months ago by
Ram
43k • written 7.8 years ago by
John
13k
11
votes
0
replies
6.6k
views
Tutorial:
Yes .. BBMap can do that! - Part II randomreads (read simulation), demuxbyname/filterbyname, bbsplit (read binning/decontamination) and pileup (cover…
bbmap
updated 12 months ago by
Ram
43k • written 3.2 years ago by
GenoMax
140k
14
votes
31
replies
6.6k
views
6 follow
Tutorial:
gene set filter/selection for training ab initio annotation tools
geneset
genome
gene
abinitio
updated 12 months ago by
Ram
43k • written 4.6 years ago by
Juke34
8.5k
16
votes
0
replies
6.6k
views
Tutorial:
Introduction To Ngs Bioinformatics By The Bioinformatics Team At The University Of Texas
course
training
updated 13 months ago by
Ram
43k • written 11.8 years ago by
Istvan Albert
100k
8
votes
2
replies
6.5k
views
Tutorial:
Troubleshooting issues with SURPI pipeline for pathogen identification from complex metagenomic NGS data.
metagenomics
clinical-genomics
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
GouthamAtla
12k
21
votes
9
replies
6.5k
views
8 follow
Tutorial:
Interactive Perl Learning
perl
updated 13 months ago by
Ram
43k • written 10.8 years ago by
Medhat
9.7k
19
votes
7
replies
6.4k
views
Tutorial:
scRNA-seq CITE-seq-count bioinformatics
CITE-seq-count
scRNA-seq
RNA-Seq
updated 8 months ago by
ATpoint
81k • written 4.0 years ago by
colindaven
6.3k
14
votes
2
replies
6.4k
views
Tutorial:
ChIP-seq analysis tutorial
ChIP-Seq
updated 12 months ago by
Ram
43k • written 8.6 years ago by
Ming Tommy Tang
★ 3.9k
34
votes
15
replies
6.4k
views
6 follow
Tutorial:
How to do data cleaning for VCF genetic file
vcf
updated 12 months ago by
Ram
43k • written 4.8 years ago by
Shicheng Guo
★ 9.4k
16
votes
6
replies
6.4k
views
Tutorial:
How to make your snakefiles self-documenting
snakemake
updated 11 months ago by
Ram
43k • written 7.4 years ago by
Botond Sipos
★ 1.7k
6
votes
0
replies
6.4k
views
Tutorial:
Leveraging Flow Order And Flow Signals From Ion Torrent Data
ion-torrent
updated 13 months ago by
Ram
43k • written 11.9 years ago by
Biostar User
▴ 360
15
votes
7
replies
6.4k
views
Tutorial:
Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
ChIP-Seq
peaks
R
HOMER
updated 12 months ago by
Ram
43k • written 7.9 years ago by
steve
★ 3.5k
29
votes
5
replies
6.3k
views
Tutorial:
Gnu Parallel Tutorial
parallel
gnu-parallel
updated 13 months ago by
Ram
43k • written 10.5 years ago by
ole.tange
★ 4.4k
20
votes
7
replies
6.3k
views
Tutorial:
Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2
RNA-Seq
R
updated 12 months ago by
Ram
43k • written 5.5 years ago by
ahmad mousavi
▴ 800
4
votes
1
reply
6.1k
views
Tutorial:
Chip-Seq Data Analysis Tutorial
chip-seq
updated 13 months ago by
Ram
43k • written 11.9 years ago by
Biostar User
▴ 360
13
votes
7
replies
6.1k
views
Tutorial:
STARsolo config for 10x Chromium v1, v2, v3
Chromium
10x
STARsolo
STAR
updated 12 months ago by
Ram
43k • written 3.5 years ago by
Kevin Blighe
87k
36
votes
5
replies
6.0k
views
Tutorial:
[Beginner] Introduction to bioinformatics file types
fastq
fasta
bed
SAM
updated 6 months ago by
gallardodiazmiriam
▴ 20 • written 8.7 years ago by
Luke Crichton
▴ 410
22
votes
2
replies
6.0k
views
Tutorial:
Use a workflow management tool to manage your computational pipelines
workflow-management
snakemake
pipeline
updated 11 months ago by
Ram
43k • written 7.4 years ago by
Eric Lim
★ 2.1k
13
votes
6
replies
5.9k
views
Tutorial:
Trim & align paired-end reads in a single pass
align
trim
fastq
pipe
paired-end
updated 11 months ago by
Ram
43k • written 7.8 years ago by
dariober
14k
18
votes
2
replies
5.9k
views
Tutorial:
Update kraken databases
database
kraken
k-mer
python
updated 10 months ago by
Ram
43k • written 6.9 years ago by
Sej Modha
5.3k
408 results • Page
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Recent Votes
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Comment: Error in openning FastQC
by
friszd
• 0
fastqc -o output.html input.fastq ctrl+c ctrl+v
Comment: Error running local blastn in R using system2
by
GenoMax
140k
What do you see if you `cat nt_euk.nal`? Do the number of pieces mentioned in that file match with what you locally have?
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
It is your data and if you want to do that it is up to you. You may be throwing away essentially good data (you should remove the nextera s…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
Some things never change ... the most common mistake is still the one on top there
Comment: Low number of both surviving reads after trimming
by
Ram
43k
I see that the code content was not added again, just the formatting modified. The output is still mangled. Compare it to the output you se…
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Mensur Dlakic
★ 26k
I was trying to avoid re-living traumatic events, but here goes. This is an attempt to delete all the files with a certain extension but in…
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your response. There was no particular reason of `LEADING:20 and TRAILING:20`, but I used the same parameters as I had used …
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
A significant fraction of your reads appear to have the nextera sequence, that combined to this directive `LEADING:20` (do you have a reaso…
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Here is my fastqc, especially adapter content graph, before trimming(R1 and R2): ![enter image description here][1] And this after trimm…
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thanks, I modified.
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Pierre Lindenbaum
160k
11 years ago: https://www.biostars.org/p/7126/
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
haha yes exactly! After the first or second ruined fasta, I started "catting" all fasta files and piping to other commands, just to reduce …
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
... ha, beat me to it, posted at the same time ... this error rules them all .. here is a cool trick on how to count fasta headers in file…
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
I've definitely ruined some genome fasta files by running `grep ^> mygenome.fasta` instead of `grep "^>" mygenome.fasta`
Comment: Error in CIBERSORTx
by
o.nad
• 0
Hello. I faced the same problem but not able to resolve it. I don't have double quotation and no NA values and the dataset used is in the f…
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