Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
384 results • Page
2 of 8
Sort: Votes
Rank
Views
Votes
Replies
50
votes
1
reply
7.9k
views
Tutorial:
Basic normalization, batch correction and visualization of RNA-seq data
edger
RNA-seq
updated 9 months ago by
Ram
41k • written 3.2 years ago by
ATpoint
78k
49
votes
7
replies
11k
views
7 follow
Tutorial:
Genome Assembly Review Papers
assembly
papers
updated 9 months ago by
Ram
41k • written 11.3 years ago by
Istvan Albert
99k
48
votes
30
replies
9.4k
views
11 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 5 weeks ago by
ATpoint
78k • written 7.8 years ago by
Ram
41k
47
votes
19
replies
13k
views
8 follow
Tutorial:
Fastq Quality Control And Reporting - Aka Fastqc Versus The New Contenders
quality-control
fastqc
updated 11 months ago by
Ram
41k • written 10.8 years ago by
Istvan Albert
99k
45
votes
2
replies
36k
views
Tutorial:
Mapping Reads With Bwa And Bowtie
bowtie
bwa
updated 9 months ago by
Ram
41k • written 11.7 years ago by
MSU course 2011
▴ 540
44
votes
6
replies
23k
views
Tutorial:
Greatly speed up conda by using mamba
software
updated 22 months ago by
cameron.cowan
▴ 40 • written 2.7 years ago by
rpolicastro
12k
44
votes
3
replies
12k
views
Tutorial:
A Wet-Lab Guide to 'what I wish I had known' for Computational Biology
bioinformatics
computational-biology
updated 8 months ago by
Ram
41k • written 7.7 years ago by
Sinji
★ 3.2k
43
votes
6
replies
12k
views
Tutorial:
Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
ensembl
maf
tcga
vcf
updated 9 months ago by
Ram
41k • written 9.9 years ago by
Cyriac Kandoth
6.0k
42
votes
2
replies
18k
views
Tutorial:
Sequencing Technology Review Papers
sequencing
papers
updated 9 months ago by
Ram
41k • written 11.3 years ago by
Istvan Albert
99k
42
votes
16
replies
23k
views
15 follow
Tutorial:
Tutorial: Analyze exome Copy number variation (CNV) in single patient or in population.
GISTIC
varscan2
CNV
copy-number
updated 16 months ago by
Ram
41k • written 8.2 years ago by
Chirag Nepal
★ 2.4k
42
votes
19
replies
7.6k
views
8 follow
Tutorial:
Designing Command-Line Interfaces (Clis) For Scientific Software
software
updated 9 months ago by
Ram
41k • written 10.8 years ago by
Daniel Standage
4.1k
40
votes
9
replies
11k
views
10 follow
Tutorial:
Resources for flow cytometry bioinformatics
single-cell
flow-cytometry
updated 9 months ago by
Ram
41k • written 9.6 years ago by
Ahill
★ 1.9k
39
votes
8
replies
12k
views
10 follow
Tutorial:
Methylation Analysis Tutorial in R_part1
cancer
R
methylation
updated 9 months ago by
Ram
41k • written 3.2 years ago by
Hamid Ghaedi
3.1k
39
votes
6
replies
19k
views
Tutorial:
Creating chromosome karyotype plot with R and ggplot2
ggplot2
R
chromosome
karyotype
updated 6 months ago by
Ram
41k • written 6.3 years ago by
steve
★ 3.4k
36
votes
14
replies
32k
views
14 follow
Tutorial:
installing samtools with conda - overcoming two common errors
samtools
conda
updated 29 days ago by
psschlogl
▴ 50 • written 3.3 years ago by
lavinia.gordon
▴ 160
36
votes
5
replies
5.9k
views
Tutorial:
[Beginner] Introduction to bioinformatics file types
fastq
fasta
bed
SAM
updated 12 weeks ago by
gallardodiazmiriam
▴ 20 • written 8.4 years ago by
Luke Crichton
▴ 410
35
votes
17
replies
16k
views
12 follow
Tutorial:
Machine Learning For Cancer Classification - Part 3 - Predicting With A Random Forest Classifier
machine-learning
classification
updated 7 months ago by
GenoMax
136k • written 10.0 years ago by
Obi Griffith
20k
34
votes
15
replies
6.0k
views
6 follow
Tutorial:
How to do data cleaning for VCF genetic file
vcf
updated 8 months ago by
Ram
41k • written 4.5 years ago by
Shicheng Guo
★ 9.3k
34
votes
15
replies
19k
views
12 follow
Tutorial:
TCGA UUIDS to TCGA barcode (SampleID) in R
next-gen
GDC
R
TCGA
updated 8 months ago by
Ram
41k • written 7.2 years ago by
martinguerrerog89
▴ 310
32
votes
12
replies
29k
views
7 follow
Tutorial:
So What Does The Sequence Duplication Rate Really Mean In A Fastqc Report
quality-control
fastqc
updated 9 months ago by
Ram
41k • written 10.1 years ago by
Istvan Albert
99k
32
votes
4
replies
7.3k
views
Tutorial:
Fast LD computation from VCF files using tomahawk
ld
snp
vcf
vcftools
bcftools
updated 8 months ago by
Ram
41k • written 5.1 years ago by
firestar
★ 1.6k
31
votes
6
replies
11k
views
Tutorial:
A simple tutorial for a complex ComplexHeatmap
clustering
pam
arthritis
ComplexHeatmap
updated 8 months ago by
Ram
41k • written 3.5 years ago by
Kevin Blighe
86k
31
votes
8
replies
11k
views
7 follow
Tutorial:
How To Create A Bioinformatics Pipeline Using Spotify !
python
pipeline
updated 9 months ago by
Ram
41k • written 9.7 years ago by
Rad
▴ 810
30
votes
14
replies
16k
views
8 follow
Tutorial:
Installation of the MuSiC suite on unsupported Linux distributions
genome-music
linux
smg
updated 9 months ago by
Ram
41k • written 10.8 years ago by
Cyriac Kandoth
6.0k
30
votes
6
replies
22k
views
Tutorial:
Transforming And Manipulating Color Space Reads
conversion
solid
updated 14 months ago by
Ram
41k • written 11.6 years ago by
Istvan Albert
99k
29
votes
10
replies
73k
views
9 follow
Tutorial:
Installing an updated R version (>=4.0) using conda
software-error
R
updated 9 months ago by
Ram
41k • written 2.7 years ago by
Nitin Narwade
★ 1.5k
29
votes
5
replies
6.2k
views
Tutorial:
Gnu Parallel Tutorial
parallel
gnu-parallel
updated 9 months ago by
Ram
41k • written 10.2 years ago by
ole.tange
★ 4.4k
28
votes
4
replies
4.2k
views
Tutorial:
Modern Statistics for Modern Biology
statistics
updated 8 months ago by
Ram
41k • written 4.9 years ago by
Jean-Karim Heriche
26k
28
votes
13
replies
12k
views
9 follow
Tutorial:
How to get FASTQ reads from the Short Read Archive (SRA)
fastq
sra
updated 22 months ago by
liorglic
★ 1.3k • written 2.1 years ago by
Istvan Albert
99k
27
votes
0
replies
3.4k
views
Tutorial:
Building Docker images
singularity
docker
container
16 months ago by
ATpoint
78k
26
votes
17
replies
7.4k
views
8 follow
Tutorial:
virtualenv - running Python based software in isolation
python
virtualenv
updated 14 months ago by
Ram
41k • written 9.3 years ago by
Ian
6.0k
26
votes
0
replies
2.3k
views
Tutorial:
Resources / databases for clinical interpretation of cancer variants
interpretation
cancer
annotation
variant
updated 8 months ago by
Ram
41k • written 4.1 years ago by
Malachi Griffith
19k
25
votes
15
replies
8.6k
views
8 follow
Tutorial:
Syllabus To Learn Bioinformatics From Online Video Resources
course
training
mooc
updated 9 months ago by
Ram
41k • written 10.9 years ago by
Medhat
9.7k
24
votes
4
replies
7.2k
views
Tutorial:
Using EnrichedHeatmap for visualization of NGS experiments
heatmap
chip-seq
atac-seq
EnrichedHeatmap
updated 8 months ago by
Ram
41k • written 4.3 years ago by
ATpoint
78k
23
votes
19
replies
6.4k
views
10 follow
Tutorial:
MutScan: Detect important mutations by scanning FastQ files directly
fastq
mutation
cancer
target
updated 8 months ago by
Ram
41k • written 7.2 years ago by
chen
★ 2.5k
23
votes
8
replies
5.2k
views
Tutorial:
A Practical (And Opinionated) Guide To Analyzing Human Methylation 450K Data
450K
methylation
updated 23 months ago by
Ram
41k • written 9.3 years ago by
brentp
24k
22
votes
2
replies
5.8k
views
Tutorial:
Use a workflow management tool to manage your computational pipelines
workflow-management
snakemake
pipeline
updated 7 months ago by
Ram
41k • written 7.1 years ago by
Eric Lim
★ 2.1k
22
votes
1
reply
3.1k
views
Tutorial:
Introduction To R Course Materials Available
R
updated 11 months ago by
Ram
41k • written 11.6 years ago by
Sean Davis
26k
21
votes
5
replies
6.6k
views
Tutorial:
Analysis of single-cell RNA-seq data
single-cell
RNA-Seq
updated 8 months ago by
Ram
41k • written 7.4 years ago by
Geparada
★ 1.5k
21
votes
10
replies
6.3k
views
Tutorial:
Finding the significance of the overlap between 2 or more gene sets using simulation in R.
tidyverse
gene
R
updated 8 months ago by
Ram
41k • written 3.3 years ago by
rpolicastro
12k
21
votes
9
replies
6.3k
views
8 follow
Tutorial:
Interactive Perl Learning
perl
updated 9 months ago by
Ram
41k • written 10.5 years ago by
Medhat
9.7k
21
votes
2
replies
5.1k
views
Tutorial:
Extracting genomic feature sequences from GTF/GFF files with AGAT
extract
GTF
GFF
sequence
updated 15 months ago by
eggrandio
▴ 40 • written 2.6 years ago by
Juke34
8.4k
20
votes
7
replies
6.1k
views
Tutorial:
Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2
RNA-Seq
R
updated 8 months ago by
Ram
41k • written 5.1 years ago by
ahmad mousavi
▴ 770
20
votes
2
replies
7.8k
views
Tutorial:
Creating a karyotype plot with genes using karyoploteR
karyoploteR
visualization
R
genome
updated 6 months ago by
Ram
41k • written 6.0 years ago by
bernatgel
★ 3.4k
20
votes
14
replies
3.7k
views
Tutorial:
Video-tutorials: How to get started using EaSeq for interactive ChIP-seq data visualization and exploration (Windows)
ChIP-Seq
visualization
Windows
EaSeq
updated 8 months ago by
Ram
41k • written 7.6 years ago by
Mads Lerdrup
▴ 460
20
votes
4
replies
2.5k
views
Tutorial:
Bash One-liners collection on Github
bash
linux
shell
updated 8 months ago by
Ram
41k • written 4.6 years ago by
nim.1111.ou
▴ 180
20
votes
4
replies
8.4k
views
Tutorial:
DE analysis by edgeR
RNA-Seq
R
edgeR
updated 8 months ago by
Ram
41k • written 7.2 years ago by
fi1d18
★ 4.2k
20
votes
6
replies
5.3k
views
Tutorial:
Open Targets and programmatic access
open-targets
disease
API
drug
updated 8 months ago by
Ram
41k • written 7.2 years ago by
Denise CS
★ 5.2k
20
votes
0
replies
8.6k
views
Tutorial:
Metagenomics Review Papers
metagenomics
papers
updated 9 months ago by
Ram
41k • written 11.3 years ago by
Istvan Albert
99k
20
votes
4
replies
14k
views
Tutorial:
How To Install A Specific Cdf Package For Use In Bioconductor
bioconductor
affymetrix
updated 9 months ago by
Ram
41k • written 10.7 years ago by
Obi Griffith
20k
384 results • Page
2 of 8
Recent Votes
Problems with colors in FeaturePlot after integration in Seurat
Problems with colors in FeaturePlot after integration in Seurat
A: Get number of variations in a huge VCF using Tabix?
Peak annotation with HOMER. Statistics with the annStats parameter
Answer: How to create a mutation frequency comparison plot?
Answer: Ambient RNA removal method that generates whole (integer) counts
A: Is It Valid To Convert A Fold Change Matrix Into Z Score?
Recent Locations •
All
USA,
just now
Cambridge, MA,
4 minutes ago
Netherlands,
5 minutes ago
United States,
10 minutes ago
Whitefish, MT,
10 minutes ago
France,
12 minutes ago
Oviedo,
12 minutes ago
Recent Awards •
All
Scholar
to
rpolicastro
12k
Teacher
to
ATpoint
78k
Popular Question
to
Omics data mining
▴ 220
Commentator
to
Carambakaracho
★ 3.2k
Popular Question
to
kirillkirilenko
▴ 20
Popular Question
to
bioinfo
▴ 60
Commentator
to
Devon Ryan
104k
Recent Replies
Comment: Resolving over clustered NGS with Q-scores
by
sam.himes92
• 0
Yes at 5%.
Comment: Resolving over clustered NGS with Q-scores
by
ATpoint
78k
Has phiX been spiked in to increase nucleotide diversity.
Comment: How is "integer score for display" calculated in MACS2
by
SplitInf
▴ 10
since this is one of the top search results, I'm cross-posting this comment from another user (alexbarrera) "that the values of the 5th co…
Comment: Very low successfully assigned alignments with feature counts
by
Istvan Albert
99k
Load up your data in IGV and visualize it relative to your annotation file. It will tell you where the data aligns. 5% match on a 99% ali…
Answer: Ambient RNA removal method that generates whole (integer) counts
by
jared.andrews07
★ 16k
I've definitely just rounded soupX output and had no issues with pseudobulking. A colleague speaks highly of Cellbender, though it take…
Comment: Curated model organism gene functional annotations
by
manaswwm
▴ 490
I thought Interproscan already has species-specific information, for example [this][1] page for Buchnera aphidicola. You can try to search …
Comment: Aligning sequences with multiple genetic codes!
by
5heikki
11k
I don't understand your problem. What do you mean when you write: > These genes even in the same species may use different genetic codes. …
Comment: An issue with gtf file (ballgownrsem)
by
cucindarko51
• 0
I also encountered issues when running ballgownrsem with gff files. Ballgown object was created, there is no informations about TPM and FPK…
Answer: Scanpy Pearson residual PCA error
by
Maëlick
• 0
I had the same problems and then realize that I forgot the preprocessing! If you add this commands before running the PCA, it should work:…
Comment: Calculate GC content for entire chromosome
by
colindaven
5.8k
Try tripling your example seq length, see 20bp min region -l INT min region length to output [20] To answer your question, it …
Comment: Very low successfully assigned alignments with feature counts
by
GenoMax
136k
Is the genome/annotation from the same source i.e. Ensembl or so it appears?
Comment: Calculate GC content for entire chromosome
by
ATpoint
78k
What does this do? It's not documented well and does not work for me in terms of, it produces no output: cat foo.fa >chr1 GCGC…
Comment: Need help to find FASTA sequence from dbSNP
by
GenoMax
136k
Did you not see the last part in my comment above about how to get the sequence?
Comment: Execute R command on specific termimal
by
QX
• 0
Hi @atpoint Thank you for your answer!
Comment: Need help to find FASTA sequence from dbSNP
by
syedahumairagillani
• 0
Thank you for your response. Actually I am looking for fasta sequence of SNP as I shared via image, rather than just location. Would you p…
Traffic: 2308 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6