Limit : all time
all time today this week this month this year
353 results • Page 3 of 8
Sort: Votes
Rank Views Votes Replies
19
votes
9
replies
6.0k
views
8 follow
Tutorial: Interactive Perl Learning
Tutorial perl tutorial
updated 16 months ago by 37k • written 9.6 years ago by 9.5k
18
votes
2
replies
9.5k
views
Tutorial: Video: RNA-Seq Alignment and Visualization using Galaxy and IGB
RNA-Seq Galaxy IGB
updated 10 months ago by 37k • written 8.3 years ago by ▴ 860
18
votes
2
replies
5.4k
views
Tutorial: Update kraken databases
kraken k-mer database python Tutorial
4.9 years ago by Sej Modha 5.2k
18
votes
21
replies
6.6k
views
10 follow
Tutorial: Create de novo repeat library
de-novo repeat Tutorial annotation
updated 6 weeks ago by ▴ 20 • written 3.2 years ago by 7.5k
17
votes
40
replies
15k
views
16 follow
Tutorial: Easy way to run easily orthoMCL (Copy & paste)
run easy orthomcl all-v-all mcl Tutorial
updated 2.2 years ago by ★ 2.0k • written 6.6 years ago by ▴ 160
17
votes
3
replies
11k
views
Tutorial: bedGraphToBigWig Tutorial and Report
bedGraphToBigWig
updated 6 months ago by 37k • written 7.0 years ago by ★ 9.2k
17
votes
9
replies
4.2k
views
Tutorial: Finding the significance of the overlap between 2 or more gene sets using simulation in R.
R tidyverse gene Tutorial
updated 16 months ago by ★ 1.1k • written 2.4 years ago by 10k
17
votes
13
replies
1.6k
views
Tutorial: Screen shots of text (please don't)!
meta Forum Tutorial
5.8 years ago by Michael Dondrup 52k
16
votes
11
replies
7.2k
views
Tutorial: How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking
meta how-to documentation Tutorial
5 months ago by Ram 37k
16
votes
5
replies
8.3k
views
Tutorial: Using The Biomart Perl Api For Simple Queries
biomart perl api tutorial Tutorial
updated 4 months ago by 37k • written 10.4 years ago by 20k
16
votes
0
replies
12k
views
Tutorial: Workshop - Analysis Of Next Generation Sequencing Data
rna-seq analysis tutorial Tutorial
updated 10.5 years ago by 3.8k • written 10.8 years ago by 9.8k
16
votes
7
replies
12k
views
Tutorial: Integrating VDJ sequencing data with Seurat
Seurat clonotyping VDJ sc-RNAseq Tutorial
updated 23 months ago by 8.6k • written 3.6 years ago by ▴ 310
16
votes
11
replies
13k
views
7 follow
Tutorial: retrieve full TCGA datasets from cBioportal with R
cBioportal TCGA data_retrieval RNASeq R Tutorial
updated 3.7 years ago by ▴ 30 • written 6.3 years ago by ★ 4.6k
15
votes
1
reply
6.0k
views
Tutorial: A compilation of conversion tools for BED, SAM/BAM, psl, pslx, blast tabular and blast xml
BED SAM psl blast Tutorial
5.2 years ago by Joseph Hughes ★ 3.0k
15
votes
5
replies
11k
views
6 follow
Tutorial: Easy way to do GO enrichment in R
enrichr gene RNA-Seq R Tutorial
updated 8 months ago by 84k • written 5.2 years ago by ▴ 740
15
votes
2
replies
6.4k
views
Tutorial: Genotype And Snp Calling Review Papers
snp tutorial Tutorial
updated 6.0 years ago by ▴ 350 • written 10.4 years ago by 96k
15
votes
5
replies
13k
views
Tutorial: How to create a mutation lolliplot with GenVisR
genvisr graphics bioconductor R Tutorial
updated 6.4 years ago by • 0 • written 6.6 years ago by 20k
15
votes
2
replies
2.7k
views
Tutorial: Introduction to bedtools.
bedtools tutorial Tutorial
updated 11 months ago by 37k • written 8.2 years ago by 11k
15
votes
2
replies
1.3k
views
Tutorial: Germline variant calling pipeline using Snakemake
snakemake GATK germline_variant_calling
updated 3 months ago by ▴ 790 • written 16 months ago by ▴ 270
15
votes
1
reply
2.9k
views
Tutorial: Current Topics in Genome Analysis 2016 (collection of educational lectures)
workshop training genomics lectures Tutorial
6.7 years ago by Malachi Griffith 19k
15
votes
3
replies
4.1k
views
Tutorial: NCBI blast tutorial
ncbi blast tutorial Tutorial
updated 6.8 years ago by ▴ 540 • written 6.8 years ago by 11k
15
votes
0
replies
6.3k
views
Tutorial: Introduction To Ngs Bioinformatics By The Bioinformatics Team At The University Of Texas
bioinformatics training tutorial Tutorial
10.6 years ago by Istvan Albert 96k
14
votes
7
replies
5.4k
views
Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
ChIP-Seq R HOMER peaks Tutorial
3.5 years ago by steve ★ 3.3k
14
votes
2
replies
6.0k
views
Tutorial: ChIP-seq analysis tutorial
Tutorials ChIP-Seq
updated 4 months ago by 37k • written 7.4 years ago by ★ 2.9k
14
votes
0
replies
8.7k
views
Tutorial: How to generate PCA plot and heatmaps in R
RNA-Seq R PCA heatmap Tutorial
6.4 years ago by Ming Tang ★ 2.9k
14
votes
0
replies
7.9k
views
Tutorial: Video: ChIP-Seq Analysis and Visualization using Galaxy and IGB.
IGB ChIP-Seq Galaxy MACS RNA-Seq
updated 10 months ago by 37k • written 8.0 years ago by ▴ 860
14
votes
2
replies
2.6k
views
Tutorial: Methylation Analysis Tutorial in R_part2
RNA-Seq R methylation Tutorial cancer
4 months ago by Hamid Ghaedi 2.8k
14
votes
2
replies
2.1k
views
Tutorial: Exploring OpenSNP - an RMarkdown report on crowdsourced genotypes and phenotypes
SNP R Tutorial
5.0 years ago by Jeremy Leipzig 21k
13
votes
6
replies
5.1k
views
Tutorial: Trim & align paired-end reads in a single pass
trim align paired-end fastq pipe Tutorial
6.6 years ago by dariober 14k
13
votes
9
replies
3.5k
views
Tutorial: TCGA transcriptome data to R (DESeq2)
TCGA GDC DESeq2
updated 7 months ago by ▴ 40 • written 14 months ago by ★ 1.1k
13
votes
3
replies
4.6k
views
Tutorial: Video: Visualization of whole genome DNA methylation data in IGB
Bismark BS-Seq RNA-Seq IGB
updated 8 months ago by 37k • written 7.9 years ago by ▴ 860
13
votes
8
replies
2.4k
views
Tutorial: Setting up Aspera Connect (ascp) on Linux and macOS
aspera ascp
10 weeks ago by ATpoint 68k
13
votes
4
replies
4.0k
views
Tutorial: RNASeq tutorial for gene differential expression analysis
R RNA-Seq Transcriptomics Tutorial bioconductor
12 months ago by Thind amarinder ▴ 280
12
votes
6
replies
5.6k
views
Tutorial: How to make your snakefiles self-documenting
snakemake Tutorial
updated 5.9 years ago by ★ 2.0k • written 6.2 years ago by ★ 1.7k
12
votes
31
replies
4.5k
views
6 follow
Tutorial: gene set filter/selection for training ab initio annotation tools
gene geneset abinitio Tutorial genome
3 months ago by Juke34 7.5k
12
votes
1
reply
4.7k
views
Tutorial: scRNA-seq CITE-seq-count bioinformatics
RNA-Seq CITE-seq-count Tutorial scRNA-seq
5 months ago by colindaven 4.4k
12
votes
1
reply
1.8k
views
Tutorial: PCR Primer or Primer+Probe design
pcr probe rt-pcr qpcr primer
updated 20 months ago by ★ 14k • written 20 months ago by 84k
12
votes
0
replies
7.2k
views
Tutorial: Plot average methylation levels across TSS region
bedtools RRBS R methylation
updated 9 months ago by 37k • written 8.0 years ago by ★ 4.6k
12
votes
5
replies
7.5k
views
Tutorial: How To Install BioPerl Without Root Privileges in Ubuntu/Linxu
bioperl Tutorial
6.3 years ago by Shicheng Guo ★ 9.2k
12
votes
11
replies
6.5k
views
Tutorial: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
NCBI SRA Bioproject BioSample Tutorial
updated 5.5 years ago by ▴ 20 • written 5.9 years ago by ★ 2.4k
12
votes
4
replies
4.2k
views
Tutorial: *FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
Tutorial linux bioinformatics R
updated 14 months ago by • 0 • written 24 months ago by ▴ 120
12
votes
0
replies
2.0k
views
Tutorial: Long versus wide data for plotting genomics data in R.
R tidyverse ggplot2 Tutorial data.table
22 months ago by rpolicastro 10k
12
votes
17
replies
2.2k
views
Tutorial: How to find the mapping percentages for data deposited in the Zaire ebolavirus bioproject from the 2014 outbreak
ebola bwa
updated 5 weeks ago by 37k • written 7.6 years ago by 96k
12
votes
4
replies
1.8k
views
Tutorial: Tutorials for Library Normalization in DESeq2 and EdgeR
#DESeq2 #EdgeR #normalization Tutorial
5.4 years ago by KVC_bioinfo ▴ 560
12
votes
1
reply
4.7k
views
Tutorial: RepSeq data processing and analysis
immunology tcr repseq sequencing repertoire
updated 3 months ago by 37k • written 7.5 years ago by 3.5k
12
votes
20
replies
11k
views
10 follow
Tutorial: Associating VDJ clonotyping data with scRNA-seq in Seurat
seurat single cell RNA-Seq TCR Tutorial
20 months ago by jared.andrews07 ★ 14k
12
votes
2
replies
976
views
Tutorial: Factors in R - How do they work, and how did I break my data?
R Tutorial
22 months ago by rpolicastro 10k
11
votes
1
reply
2.1k
views
Tutorial: Guidelines for the computational analysis of single-cell RNA sequencing data
scRNA-seq Tutorial
updated 14 months ago by 68k • written 2.1 years ago by ★ 22k
11
votes
6
replies
4.5k
views
Tutorial: sharing some naive codes for microarray normalization in R with whom are too new in R alike me
R
updated 6 months ago by 37k • written 7.0 years ago by ★ 4.1k
11
votes
3
replies
1.1k
views
Tutorial: Creating great documentation for bioinformatics software
Software Documentation Tutorial
6.5 years ago by venu 7.0k
353 results • Page 3 of 8
Recent Votes
C: Reorder heatmap rows in a dataset with missing values
A: Difference between GTF file with CHR and without CHR. ENSEMBL
Answer: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Recent Locations • All
Berlin, just now
Hong Kong, 8 minutes ago
Iran, 8 minutes ago
Israel, 16 minutes ago
Romania, 21 minutes ago
United States, 29 minutes ago
Bologna, 37 minutes ago
Recent Awards • All
Popular Question to tianshenbio ▴ 160
Popular Question to maxdlf12 • 0
Teacher to Pierre Lindenbaum 152k
Popular Question to LDT ▴ 220
Popular Question to Michael Dondrup 52k
Popular Question to caochch • 0
Popular Question to timothy.kirkwood ▴ 130
Recent Replies
Answer: trainGlimmerHMM Error while training a genome by congliu37 • 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File? by Jeremy Leipzig 21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)? by Fabio Marroni ★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism by Rob ▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers by Pierre Lindenbaum 152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence by vvasta • 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation? by Fabio Marroni ★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2 by Fabio Marroni ★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file** by Pierre Lindenbaum 152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4 by Pierre Lindenbaum 152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file by Neel ▴ 10
**Error: unable to open file or unable to determine types for file** Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
Answer: Anti-miRNA oligonuclotide identification by Asan Emirsale • 0
You should find complementary sequences to make the miRNA silent. Should it be the Biopython or another tool. The solution might be as simp…
Comment: counting reads in a fastq file using a refrence fasta file by vaslanzadeh ▴ 10
Thanks, this works but it is extremely slow, is there any other alternatives?
Traffic: 833 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6