Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
325 results • Page
3 of 7
Sort: replies
Rank
Views
Votes
Replies
29
votes
5
replies
6.1k
views
Tutorial:
Gnu Parallel Tutorial
parallel
gnu-parallel
updated 6 months ago by
Ram
40k • written 10.0 years ago by
ole.tange
★ 4.3k
64
votes
5
replies
7.0k
views
10 follow
Tutorial:
Informatics of RNA-Seq.
next-gen
RNA-Seq
updated 11 months ago by
Ram
40k • written 8.1 years ago by
GouthamAtla
12k
10
votes
5
replies
21k
views
Tutorial:
Y-DNA and mtDNA Haplogroup Predictor
haplogroup
updated 6 months ago by
Ram
40k • written 5.2 years ago by
Shicheng Guo
★ 9.3k
20
votes
5
replies
6.5k
views
Tutorial:
Analysis of single-cell RNA-seq data
single-cell
RNA-Seq
updated 5 months ago by
Ram
40k • written 7.2 years ago by
Geparada
★ 1.5k
2
votes
5
replies
2.0k
views
Tutorial:
Building OMA database on SGE
oma
updated 5 months ago by
Ram
40k • written 7.3 years ago by
javier.herrero
▴ 10
12
votes
5
replies
2.1k
views
Tutorial:
FASTA file split
fasta
updated 6 months ago by
Ram
40k • written 3.3 years ago by
Juke34
8.2k
10
votes
4
replies
3.2k
views
Tutorial:
CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation
corlevelplot
updated 4 months ago by
Ram
40k • written 5.6 years ago by
Kevin Blighe
86k
1
vote
4
replies
3.1k
views
Tutorial:
Applying machine learning to NGS transcriptomic data
next-gen
RNA-Seq
updated 4 months ago by
Ram
40k • written 5.4 years ago by
elia.brodsky
▴ 340
12
votes
4
replies
5.0k
views
Tutorial:
*FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
linux
R
updated 7 months ago by
Ram
40k • written 2.6 years ago by
garden_giessen
▴ 130
3
votes
4
replies
4.2k
views
Tutorial:
gencore: a tool to reduce sequencing noises by generating consensus reads
consensus
OpenGene
sequencing-noise
updated 4 months ago by
Ram
40k • written 5.4 years ago by
chen
★ 2.4k
1
vote
4
replies
3.1k
views
Tutorial:
How to install C++ compilers/make from GNU for Gromacs?
Gromacs
Cpp-compilers
GNU
updated 5 months ago by
Ram
40k • written 7.3 years ago by
Hassan Rasouli
▴ 10
6
votes
4
replies
7.2k
views
Tutorial:
Overlay Multiple Tracks In Ucsc Browser [Quick Minimal Tutorial]
visualization
ChIP-seq
RNA-seq
ucsc-genome-browser
bigwig
updated 7 months ago by
Ram
40k • written 10.5 years ago by
Sukhi Singh
11k
20
votes
4
replies
2.4k
views
Tutorial:
Bash One-liners collection on Github
bash
linux
shell
updated 6 months ago by
Ram
40k • written 4.4 years ago by
nim.1111.ou
▴ 180
24
votes
4
replies
6.9k
views
Tutorial:
Using EnrichedHeatmap for visualization of NGS experiments
heatmap
chip-seq
atac-seq
EnrichedHeatmap
updated 6 months ago by
Ram
40k • written 4.1 years ago by
ATpoint
76k
32
votes
4
replies
7.0k
views
Tutorial:
Fast LD computation from VCF files using tomahawk
ld
snp
vcf
vcftools
bcftools
updated 6 months ago by
Ram
40k • written 4.9 years ago by
firestar
★ 1.6k
15
votes
4
replies
4.3k
views
Tutorial:
RNASeq tutorial for gene differential expression analysis
Transcriptomics
bioconductor
RNA-Seq
R
updated 6 months ago by
Ram
40k • written 3.2 years ago by
Thind amarinder
▴ 330
3
votes
4
replies
3.5k
views
Tutorial:
Gene Set Enrichment Analysis on T-BioInfo
gene
RNA-Seq
updated 4 months ago by
Ram
40k • written 4.9 years ago by
elia.brodsky
▴ 340
20
votes
4
replies
14k
views
Tutorial:
How To Install A Specific Cdf Package For Use In Bioconductor
bioconductor
affymetrix
updated 7 months ago by
Ram
40k • written 10.5 years ago by
Obi Griffith
20k
9
votes
4
replies
4.0k
views
Tutorial:
Unsupervised clustering on gene expression data
gene-expression
clustering
RNA-seq
6 weeks ago by
Hamid Ghaedi
3.0k
19
votes
4
replies
8.6k
views
Tutorial:
Rna Seq Experimental Design For Measuring Differential Gene Expression
RNA-seq
updated 7 months ago by
Ram
40k • written 10.6 years ago by
Istvan Albert
98k
12
votes
4
replies
2.0k
views
Tutorial:
Tutorials for Library Normalization in DESeq2 and EdgeR
EdgeR
DESeq2
updated 6 months ago by
Ram
40k • written 6.0 years ago by
KVC_bioinfo
▴ 590
28
votes
4
replies
4.0k
views
Tutorial:
Modern Statistics for Modern Biology
statistics
updated 6 months ago by
Ram
40k • written 4.7 years ago by
Jean-Karim Heriche
26k
20
votes
4
replies
8.4k
views
Tutorial:
DE analysis by edgeR
RNA-Seq
R
edgeR
updated 5 months ago by
Ram
40k • written 7.0 years ago by
fi1d18
★ 4.2k
10
votes
4
replies
10k
views
Tutorial:
Using the MinION MinKNOW software on Ubuntu 1604
long-reads
oxford-nanopore
minion
updated 6 months ago by
Ram
40k • written 4.2 years ago by
colindaven
5.5k
0
votes
3
replies
50k
views
Tutorial:
Installation VMD on LINUX_64
gromacs
VMD
updated 5 months ago by
Ram
40k • written 7.3 years ago by
Hassan Rasouli
▴ 10
3
votes
3
replies
8.3k
views
Tutorial:
High Speed Downloading of SRA, SAM and Fastq Files
fastq
sam
Aspera-Connect
sra
updated 4 months ago by
Ram
40k • written 5.8 years ago by
Wenhu_Cao
▴ 100
15
votes
3
replies
4.4k
views
Tutorial:
NCBI blast tutorial
ncbi
blast
updated 5 months ago by
Ram
40k • written 7.4 years ago by
Eric Normandeau
11k
50
votes
3
replies
4.4k
views
Tutorial:
[[ Please read before posting a question ::: How To Ask A Good Question ]]
how-to
updated 6 months ago by
Ram
40k • written 4.7 years ago by
ATpoint
76k
44
votes
3
replies
12k
views
Tutorial:
A Wet-Lab Guide to 'what I wish I had known' for Computational Biology
bioinformatics
computational-biology
updated 5 months ago by
Ram
40k • written 7.5 years ago by
Sinji
★ 3.2k
6
votes
3
replies
5.5k
views
Tutorial:
High Throughput Sequence Analysis With R And Bioconductor
bioconductor
updated 7 months ago by
Ram
40k • written 11.2 years ago by
Istvan Albert
98k
1
vote
3
replies
3.0k
views
Tutorial:
resolving error of sspace_standard
software-error
Assembly
updated 5 months ago by
Ram
40k • written 7.1 years ago by
reza
▴ 300
5
votes
3
replies
5.0k
views
Tutorial:
bam2rpkm by bedtools
bam
RNA-Seq
bedtools
rpkm
updated 6 months ago by
toxin08x
• 0 • written 5.9 years ago by
jmzeng1314
▴ 130
10
votes
3
replies
4.3k
views
Tutorial:
Video: Alternative Splicing and Primer Design
RNA-Seq
IGB
updated 8 months ago by
Ram
40k • written 9.0 years ago by
Nowlan Freese
▴ 860
7
votes
3
replies
1.7k
views
Tutorial:
Automated dbSNP lookup by rsID position, plus genome build liftover
rsid
hg19
liftover
hg38
dbsnp
updated 5 months ago by
Randy H
▴ 110 • written 13 months ago by
Kevin Blighe
86k
2
votes
3
replies
2.5k
views
Tutorial:
It's about the journey, and not the destination
R
network
updated 4 months ago by
Ram
40k • written 6.5 years ago by
theobroma22
★ 1.2k
1
vote
3
replies
686
views
Tutorial:
Gibbs Sampling Algorithm Implementation for Searching DNA Motifs
montecarlo
DNA
motif
gibbssampling
splice
5 months ago by
barslmn
★ 1.8k
3
votes
3
replies
2.2k
views
Tutorial:
Generating count matrix for STAR counts in GDC v32.0 for RNA-Seq
GDC
TCGABiolinks
STAR
updated 7 months ago by
Ram
40k • written 17 months ago by
DareDevil
★ 3.3k
5
votes
3
replies
4.0k
views
Tutorial:
Chip Seq Review Papers
chip-seq
updated 7 months ago by
Ram
40k • written 10.8 years ago by
prtimilsina
▴ 80
6
votes
3
replies
4.3k
views
Tutorial:
Principles and Workflow of 16S/18S/ITS Amplicon Sequencing
alignment
sequencing
RNA-seq
gene
updated 6 months ago by
Ram
40k • written 4.9 years ago by
contact
▴ 40
51
votes
3
replies
22k
views
Tutorial:
Sam File Format - Lesser Known Tips And Tricks
sam
updated 7 months ago by
Ram
40k • written 10.7 years ago by
Ya
▴ 300
13
votes
3
replies
11k
views
Tutorial:
Plotting the coverage and depth (Y-axis) statistics of a bam file along the genome (X-axis), using Samtools, awk and R.
genome
plot
coverage
samtools
updated 5 weeks ago by
William
▴ 20 • written 6.5 years ago by
kirannbishwa01
★ 1.6k
4
votes
3
replies
4.3k
views
Tutorial:
How to get full taxonomy classification using taxize and myTAI
taxonomy
R
updated 6 months ago by
Ram
40k • written 5.5 years ago by
Daniel
★ 3.9k
9
votes
3
replies
4.0k
views
Tutorial:
Ht Sequence Analysis With R And Bioconductor By The Bioinformatics Center At Uc Riverside
bioconductor
updated 7 months ago by
Ram
40k • written 11.1 years ago by
Istvan Albert
98k
11
votes
3
replies
1.3k
views
Tutorial:
Creating great documentation for bioinformatics software
Software-Documentation
updated 5 months ago by
Ram
40k • written 7.2 years ago by
venu
7.1k
2
votes
3
replies
1.8k
views
Tutorial:
Help demonstrate reproducibility in bioinformatics with the GA4GH's tool execution Challenge
GA4GH
Docker
CWL
Rabix
updated 5 months ago by
Ram
40k • written 6.6 years ago by
adrian.sharma
▴ 20
85
votes
2
replies
56k
views
6 follow
Tutorial:
How To Ask Good Questions On Technical And Scientific Forums
how-to
updated 6 months ago by
Ram
40k • written 10.2 years ago by
Eric Normandeau
11k
22
votes
2
replies
5.8k
views
Tutorial:
Use a workflow management tool to manage your computational pipelines
workflow-management
snakemake
pipeline
updated 5 months ago by
Ram
40k • written 6.9 years ago by
Eric Lim
★ 2.1k
4
votes
2
replies
2.2k
views
Tutorial:
Apply beagle5.0 to make imputation and phasing under CentOS and PBS
beagle5.0
beagle
updated 6 months ago by
Ram
40k • written 4.3 years ago by
Shicheng Guo
★ 9.3k
42
votes
2
replies
17k
views
Tutorial:
Sequencing Technology Review Papers
sequencing
papers
updated 7 months ago by
Ram
40k • written 11.1 years ago by
Istvan Albert
98k
1
vote
2
replies
1.2k
views
Tutorial:
ViennaRNA package installation in Windows
windows
rna
mfold
viennarna
updated 3 months ago by
Ram
40k • written 12 months ago by
Sandhiya
▴ 20
325 results • Page
3 of 7
Recent Votes
Comment: How to create structural variants ground truth for alignment of two long-read ge
Comment: Low Alignment rate
Answer: How to retrieve LoF and missense variants in WES data?
Answer: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST
Seurat CellCycleScoring – confused about the proper order of operations when using SCTransform
Comment: Hisat2 index and alignment question
Recent Locations •
All
India,
just now
United States,
1 minute ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
2 minutes ago
India,
3 minutes ago
Germany,
4 minutes ago
United Kingdom,
5 minutes ago
Argentina,
5 minutes ago
Recent Awards •
All
Popular Question
to
amy__
▴ 150
Popular Question
to
David Langenberger
10k
Popular Question
to
pablo
▴ 280
Scholar
to
Pierre Lindenbaum
157k
Popular Question
to
octpus616
▴ 80
Commentator
to
dsull
★ 4.7k
Popular Question
to
rbronste
▴ 420
Recent Replies
Comment: Enrichment of mitochondrial and ribosomal pathways - an artifact?
by
ATpoint
76k
Generally these genes are highly expressed, so there would be some sort of a power bias. How do you do the DE analysis? Any cutoffs on mini…
Answer: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2
by
David Langenberger
10k
:: LAST CALL :: Apply now, if you want to join this online workshop!
Answer: how to identify uniq genes between two gff files.
by
Juke34
8.2k
You can run `agat_sp_compare_two_annotations.pl` from [AGAT][1], you should get the information you are looking for. This method allow to c…
Comment: How to find out what adapters to remove after FastQC of RNAseq data?
by
ella
• 0
Thank you for the fast help, I have the BBMap suite installed anyways and will try it out :)
Comment: How to make alpha diversity boxplot?
by
yeah
• 0
thanks a lot! can't believe that is so simple
Comment: how to identify uniq genes between two gff files.
by
nikhil
▴ 10
yes got it, thank you very much.
Comment: SCENIC-openloom not working
by
kyriakds
• 0
Hello, Did you find a solution in the end?
Comment: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
by
Vijith
▴ 30
@swbarnes2, thanks for the response, by the way, can you tell me why/ how this happens during the sequencing process, and if it could negat…
Comment: how to identify uniq genes between two gff files.
by
Pierre Lindenbaum
157k
> can you explain this ?? yes. you should use options like `-u` . > Write original A entry once if any overlaps found in B. In other word…
Comment: how to extract unique snps in a vcf file by comparing with multiple vcf files
by
Pierre Lindenbaum
157k
so validate the answer to close the question please (Green tick on the left).
Comment: how to identify uniq genes between two gff files.
by
nikhil
▴ 10
hi Pierre Linderbaum, after extracting genes, I have 5846 genes in afile.bed and 4456 genes in bfile.bed , while using bedtools intersec…
Comment: how to extract unique snps in a vcf file by comparing with multiple vcf files
by
nikhil
▴ 10
thank you, bcftools isec is working well.
Comment: how to identify uniq genes between two gff files.
by
Pierre Lindenbaum
157k
please, comment or validate the answers to your previous questions: https://www.biostars.org/p/9573151/#9573158 ; https://www.biostars.org/…
Answer: how to identify uniq genes between two gff files.
by
Pierre Lindenbaum
157k
extract genes (e.g: awk '($3=="gene") {printf("%s\t%d\t%s\n",$1;int($4)-1,$5);}' ) from both files n sort, and use bedtools intersect with…
Answer: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
by
swbarnes2
13k
G is the letter you get if there is no fluorescence. 75% of your reads have a lot of G. I don't think this run worked.
Traffic: 1848 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6