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231 results • Page
3 of 5
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Views
Votes
Replies
23
votes
4
replies
6.2k
views
Tutorial:
Using EnrichedHeatmap for visualization of NGS experiments
heatmap
chip-seq
atac-seq
EnrichedHeatmap
updated 15 days ago by
Ram
38k • written 3.6 years ago by
ATpoint
70k
20
votes
4
replies
2.2k
views
Tutorial:
Bash One-liners collection on Github
bash
linux
shell
updated 15 days ago by
Ram
38k • written 3.9 years ago by
nim.1111.ou
▴ 180
6
votes
4
replies
6.9k
views
Tutorial:
Overlay Multiple Tracks In Ucsc Browser [Quick Minimal Tutorial]
visualization
ChIP-seq
RNA-seq
ucsc-genome-browser
bigwig
updated 4 weeks ago by
Ram
38k • written 10.0 years ago by
Sukhi Singh
11k
12
votes
4
replies
4.4k
views
Tutorial:
*FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
linux
R
updated 7 weeks ago by
Ram
38k • written 2.1 years ago by
garden_giessen
▴ 120
20
votes
4
replies
13k
views
Tutorial:
How To Install A Specific Cdf Package For Use In Bioconductor
bioconductor
affymetrix
updated 4 weeks ago by
Ram
38k • written 10.0 years ago by
Obi Griffith
20k
10
votes
3
replies
4.1k
views
Tutorial:
Video: Alternative Splicing and Primer Design
RNA-Seq
IGB
updated 9 weeks ago by
Ram
38k • written 8.5 years ago by
Nowlan Freese
▴ 860
1
vote
3
replies
421
views
Tutorial:
Gibbs Sampling Algorithm Implementation for Searching DNA Motifs
montecarlo
DNA
motif
gibbs
sampling
splice
updated 3 months ago by
GenoMax
127k • written 3 months ago by
barslmn
★ 1.4k
4
votes
3
replies
3.9k
views
Tutorial:
How to get full taxonomy classification using taxize and myTAI
taxonomy
R
updated 15 days ago by
Ram
38k • written 5.0 years ago by
Daniel
★ 3.9k
8
votes
3
replies
2.5k
views
Tutorial:
Free online interactive Ensembl training
ensembl
training
genome
updated 8 months ago by
Ram
38k • written 7.1 years ago by
Emily
23k
0
votes
3
replies
2.3k
views
Tutorial:
Automatic Primer Design
Assembly
sequence
updated 7 months ago by
Ram
38k • written 7.4 years ago by
rutial
▴ 40
9
votes
3
replies
3.9k
views
Tutorial:
Ht Sequence Analysis With R And Bioconductor By The Bioinformatics Center At Uc Riverside
bioconductor
updated 5 weeks ago by
Ram
38k • written 10.6 years ago by
Istvan Albert
97k
6
votes
3
replies
4.1k
views
Tutorial:
Principles and Workflow of 16S/18S/ITS Amplicon Sequencing
alignment
sequencing
RNA-seq
gene
updated 14 days ago by
Ram
38k • written 4.4 years ago by
contact
▴ 40
1
vote
3
replies
1.4k
views
Tutorial:
Generating count matrix for STAR counts in GDC v32.0 for RNA-Seq
GDC
TCGABiolinks
STAR
updated 6 weeks ago by
Ram
38k • written 11 months ago by
dare_devil
★ 1.7k
6
votes
3
replies
5.4k
views
Tutorial:
High Throughput Sequence Analysis With R And Bioconductor
bioconductor
updated 5 weeks ago by
Ram
38k • written 10.7 years ago by
Istvan Albert
97k
50
votes
3
replies
4.0k
views
Tutorial:
[[ Please read before posting a question ::: How To Ask A Good Question ]]
how-to
updated 15 days ago by
Ram
38k • written 4.2 years ago by
ATpoint
70k
51
votes
3
replies
22k
views
Tutorial:
Sam File Format - Lesser Known Tips And Tricks
sam
updated 4 weeks ago by
Ram
38k • written 10.2 years ago by
Ya
▴ 300
5
votes
3
replies
4.5k
views
Tutorial:
bam2rpkm by bedtools
bam
RNA-Seq
bedtools
rpkm
updated 13 days ago by
toxin08x
• 0 • written 5.4 years ago by
jmzeng1314
▴ 130
13
votes
3
replies
4.7k
views
Tutorial:
Video: Visualization of whole genome DNA methylation data in IGB
Bismark
BS-Seq
RNA-Seq
IGB
updated 10 months ago by
Ram
38k • written 8.0 years ago by
Nowlan Freese
▴ 860
17
votes
3
replies
11k
views
Tutorial:
bedGraphToBigWig Tutorial and Report
bedGraphToBigWig
updated 8 months ago by
Ram
38k • written 7.1 years ago by
Shicheng Guo
★ 9.3k
5
votes
3
replies
3.9k
views
Tutorial:
Chip Seq Review Papers
chip-seq
updated 4 weeks ago by
Ram
38k • written 10.3 years ago by
prtimilsina
▴ 80
12
votes
2
replies
1.0k
views
Tutorial:
Factors in R - How do they work, and how did I break my data?
R
updated 15 days ago by
Ram
38k • written 2.0 years ago by
rpolicastro
11k
3
votes
2
replies
4.9k
views
Tutorial:
Reorder Vcf Files
vcf
updated 4 weeks ago by
Ram
38k • written 9.9 years ago by
chris.mit7
▴ 60
80
votes
2
replies
53k
views
Tutorial:
How To Ask Good Questions On Technical And Scientific Forums
how-to
updated 4 weeks ago by
Ram
38k • written 9.8 years ago by
Eric Normandeau
11k
5
votes
2
replies
813
views
Tutorial:
Automated dbSNP lookup by rsID position, plus genome build liftover
rsid
hg19
liftover
hg38
dbsnp
5 weeks ago by
Kevin Blighe
84k
7
votes
2
replies
11k
views
Tutorial:
Howto use NCBI programs behind a HTTP proxy
blast-plus
HTTP-proxy
SRA-toolkit
updated 8 months ago by
Ram
38k • written 7.1 years ago by
piet
★ 1.8k
6
votes
2
replies
2.5k
views
Tutorial:
Unsupervised clustering on gene expression data
gene
RNA-seq
expression
clustering
6 months ago by
Hamid Ghaedi
2.9k
6
votes
2
replies
2.4k
views
Tutorial:
Tutorial Bioinformatics Static Website
website
updated 27 days ago by
Ram
38k • written 9.2 years ago by
rob234king
▴ 610
7
votes
2
replies
3.3k
views
Tutorial:
List Of Tools For Mapping High-Throughput Sequencing Data (2012)
next-gen
mapping
updated 4 weeks ago by
Ram
38k • written 10.5 years ago by
Mary
11k
15
votes
2
replies
2.7k
views
Tutorial:
Introduction to bedtools.
bedtools
updated 20 days ago by
Ram
38k • written 8.4 years ago by
Aaronquinlan
11k
2
votes
2
replies
1.5k
views
Tutorial:
Human mitochondrial DNA annotation in SnpEff
chrMT
SNP
snpEff
updated 15 days ago by
Ram
38k • written 2.8 years ago by
Arup Ghosh
3.1k
3
votes
2
replies
2.0k
views
Tutorial:
Continuing Education (Pipelines): Best blogs, Online Lectures, Workshops, etc..
blogs
Workshops
conferences
tutorials
updated 4 weeks ago by
Lars
▴ 970 • written 5.9 years ago by
jnowacki
▴ 100
4
votes
2
replies
2.0k
views
Tutorial:
Apply beagle5.0 to make imputation and phasing under CentOS and PBS
beagle5.0
beagle
updated 15 days ago by
Ram
38k • written 3.8 years ago by
Shicheng Guo
★ 9.3k
45
votes
2
replies
35k
views
Tutorial:
Mapping Reads With Bwa And Bowtie
bowtie
bwa
updated 5 weeks ago by
Ram
38k • written 11.0 years ago by
MSU course 2011
▴ 540
5
votes
2
replies
2.0k
views
Tutorial:
Using Bedtools Closest (closestBed) to make distance histograms of protein binding frequency near all types of pre-RNA junctions (e.g. exon-intron an…
preRNA
closestBed
bedtools-closest
bedtools
updated 15 days ago by
Ram
38k • written 4.2 years ago by
linuxborg2
▴ 10
60
votes
2
replies
6.9k
views
Tutorial:
Table Of Contents To All Review Paper Compilations On Biostar
papers
updated 5 weeks ago by
Ram
38k • written 10.6 years ago by
Istvan Albert
97k
1
vote
2
replies
547
views
Tutorial:
ViennaRNA package installation in Windows
install
mfold
viennarna
rna
windows
updated 6 months ago by
Asaf
9.6k • written 6 months ago by
Sandhiya
▴ 20
42
votes
2
replies
17k
views
Tutorial:
Sequencing Technology Review Papers
sequencing
papers
updated 5 weeks ago by
Ram
38k • written 10.6 years ago by
Istvan Albert
97k
0
votes
2
replies
2.4k
views
Tutorial:
Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer' on 25 Feb
SNP
cancer
gene-regulation
multiomics
rna-seq
updated 11 months ago by
Ram
38k • written 8.1 years ago by
Genomics
▴ 70
15
votes
2
replies
6.5k
views
Tutorial:
Genotype And Snp Calling Review Papers
snp
updated 5 weeks ago by
Ram
38k • written 10.6 years ago by
Istvan Albert
97k
14
votes
2
replies
6.1k
views
Tutorial:
ChIP-seq analysis tutorial
Tutorials
ChIP-Seq
updated 6 months ago by
Ram
38k • written 7.6 years ago by
Ming Tommy Tang
★ 2.9k
1
vote
2
replies
2.9k
views
Tutorial:
Standalone BLAST error: UnexpectedTagClassByte
software-error
blast
updated 5 months ago by
Ram
38k • written 7.7 years ago by
Harry Detering
▴ 10
15
votes
2
replies
1.4k
views
Tutorial:
Germline variant calling pipeline using Snakemake
snakemake
GATK
germline_variant_calling
updated 5 months ago by
brunobsouzaa
▴ 810 • written 18 months ago by
nhaus
▴ 280
21
votes
2
replies
3.7k
views
Tutorial:
Extracting genomic feature sequences from GTF/GFF files with AGAT
extract
GTF
GFF
sequence
updated 6 months ago by
eggrandio
▴ 40 • written 23 months ago by
Juke34
7.8k
4
votes
2
replies
6.8k
views
Tutorial:
Analyzing Genomewide Association Study Data: A Tutorial Using Plink
plink
gwas
updated 5 weeks ago by
Ram
38k • written 10.9 years ago by
Istvan Albert
97k
4
votes
2
replies
3.3k
views
Tutorial:
Introduce OpenGene: an open source library for processing NGS data
NGS
sequencing
Julia
OpenGene
updated 14 days ago by
Ram
38k • written 7.1 years ago by
chen
★ 2.4k
10
votes
2
replies
3.1k
views
Tutorial:
How to find PubMed records where you were author (member) as part of a consortium
pubmed
updated 7 months ago by
Ram
38k • written 7.4 years ago by
Obi Griffith
20k
5
votes
2
replies
2.0k
views
Tutorial:
NCBI submissions: SRA and TSA
NCBI
TSA
SRA
RNA-Seq
updated 12 days ago by
Ram
38k • written 4.4 years ago by
saraoppenheim
▴ 50
14
votes
2
replies
2.8k
views
Tutorial:
Methylation Analysis Tutorial in R_part2
cancer
methylation
RNA-Seq
R
updated 15 days ago by
Ram
38k • written 2.5 years ago by
Hamid Ghaedi
2.9k
4
votes
1
reply
1.0k
views
Tutorial:
Real World BEDtools. Practical Examples for Variant Filtering and Gene Annotations
BED
BEDtools
updated 15 days ago by
Ram
38k • written 2.7 years ago by
sdsubaru33
▴ 40
10
votes
1
reply
2.0k
views
Tutorial:
introduce a tool for fast identification of SARS-CoV-2 and other microbes from sequencing data
SARS-CoV-2
fastv
COVID-19
updated 15 days ago by
Ram
38k • written 3.0 years ago by
chen
★ 2.4k
231 results • Page
3 of 5
Recent Votes
Answer: Variant caller reports a homozygous variant genotype, but more reads are associa
Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
Answer: What is the NCBI's definition of an "atypical genome"?
Comment: GO enrichment analysis
Comment: GO enrichment analysis
Answer: What is the NCBI's definition of an "atypical genome"?
A: Why is RNA-Seq or cDNA used to detect gene fusions instead of gDNA?
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Answer: Any tips in landing a bioinformatic job?
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Vincent Laufer
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Do you have a public facing github page (or equivalent) that provides examples of bioinformatics workflows you've created? For myself, if …
Comment: Align miRNA library (small RNA-seq) without trimming
by
Paola
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Hi Ming Untrimmed reads have 76bp in average.
Answer: Align miRNA library (small RNA-seq) without trimming
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Ming Tommy Tang
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bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
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by
afei
• 0
Hi! I'm also confused by this. And the site (https://gatkforums.broadinstitute.org/gatk/categories/gatk-support-forum) is closed. Have you …
Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
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rebeliscu
▴ 50
Indeed, I thought the quality might be a factor. Still, given the information, it seems odd to me that that call was made. Thanks for you…
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cfos4698
▴ 730
To generate a VCF file one would normally pipe the input of an `mpileup` command into an actual `call` command. For example: ``` bcftools …
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Your assumption is correct - AlphaFold pTM has nothing to do with post-translational modifications. See [**here**][1]. Not to discourage…
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I had this issue today and was able to resolve it by changing the random seed Admixture uses by adding `-s time` (which sets the random see…
Answer: Total No of Genes of GENCODE Release 43
by
ahmad
• 0
The following is the correct code gtf_43<-rtracklayer::import('gencode.v43.primary_assembly.annotation.gtf') dtgtf_43<-data.frame(gtf_4…
Comment: Total No of Genes of GENCODE Release 43
by
ahmad
• 0
Hello, thanks for replying, by mistake I paste the wrong code. the following is the corrected gtf_43<-rtracklayer::import('gencode.v43…
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I have no idea what that is besides a bunch of jumbled sequences. You'll need look up the structure of the reads / library from wherever yo…
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dsull
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First thing: kallisto cannot interface with UMI-tools (kallisto doesn't use read headers and therefore you're stuck with "the kallisto way"…
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There is some somatic SV study on these HCC1395: https://doi.org/10.1186/s13059-022-02816-6. There is also a CNA preprint from years ago b…
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lethalfang
▴ 90
Just in case things are hard to find, for the WGS/WES, these are the data (what the file names mean: https://sites.google.com/view/seqc2/ho…
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Hmm, not sure why `subset` doesn't match to '0:CD8 T cell' but maybe it's the ":"? An alternative option is the following: ``` idx <- whi…
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