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325 results • Page 3 of 7
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29
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5
replies
6.1k
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Tutorial: Gnu Parallel Tutorial
parallel gnu-parallel
updated 6 months ago by 40k • written 10.0 years ago by ★ 4.3k
64
votes
5
replies
7.0k
views
10 follow
Tutorial: Informatics of RNA-Seq.
next-gen RNA-Seq
updated 11 months ago by 40k • written 8.1 years ago by 12k
10
votes
5
replies
21k
views
Tutorial: Y-DNA and mtDNA Haplogroup Predictor
haplogroup
updated 6 months ago by 40k • written 5.2 years ago by ★ 9.3k
20
votes
5
replies
6.5k
views
Tutorial: Analysis of single-cell RNA-seq data
single-cell RNA-Seq
updated 5 months ago by 40k • written 7.2 years ago by ★ 1.5k
2
votes
5
replies
2.0k
views
Tutorial: Building OMA database on SGE
oma
updated 5 months ago by 40k • written 7.3 years ago by ▴ 10
12
votes
5
replies
2.1k
views
Tutorial: FASTA file split
fasta
updated 6 months ago by 40k • written 3.3 years ago by 8.2k
10
votes
4
replies
3.2k
views
Tutorial: CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation corlevelplot
updated 4 months ago by 40k • written 5.6 years ago by 86k
1
vote
4
replies
3.1k
views
Tutorial: Applying machine learning to NGS transcriptomic data
next-gen RNA-Seq
updated 4 months ago by 40k • written 5.4 years ago by ▴ 340
12
votes
4
replies
5.0k
views
Tutorial: *FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
linux R
updated 7 months ago by 40k • written 2.6 years ago by ▴ 130
3
votes
4
replies
4.2k
views
Tutorial: gencore: a tool to reduce sequencing noises by generating consensus reads
consensus OpenGene sequencing-noise
updated 4 months ago by 40k • written 5.4 years ago by ★ 2.4k
1
vote
4
replies
3.1k
views
Tutorial: How to install C++ compilers/make from GNU for Gromacs?
Gromacs Cpp-compilers GNU
updated 5 months ago by 40k • written 7.3 years ago by ▴ 10
6
votes
4
replies
7.2k
views
Tutorial: Overlay Multiple Tracks In Ucsc Browser [Quick Minimal Tutorial]
visualization ChIP-seq RNA-seq ucsc-genome-browser bigwig
updated 7 months ago by 40k • written 10.5 years ago by 11k
20
votes
4
replies
2.4k
views
Tutorial: Bash One-liners collection on Github
bash linux shell
updated 6 months ago by 40k • written 4.4 years ago by ▴ 180
24
votes
4
replies
6.9k
views
Tutorial: Using EnrichedHeatmap for visualization of NGS experiments
heatmap chip-seq atac-seq EnrichedHeatmap
updated 6 months ago by 40k • written 4.1 years ago by 76k
32
votes
4
replies
7.0k
views
Tutorial: Fast LD computation from VCF files using tomahawk
ld snp vcf vcftools bcftools
updated 6 months ago by 40k • written 4.9 years ago by ★ 1.6k
15
votes
4
replies
4.3k
views
Tutorial: RNASeq tutorial for gene differential expression analysis
Transcriptomics bioconductor RNA-Seq R
updated 6 months ago by 40k • written 3.2 years ago by ▴ 330
3
votes
4
replies
3.5k
views
Tutorial: Gene Set Enrichment Analysis on T-BioInfo
gene RNA-Seq
updated 4 months ago by 40k • written 4.9 years ago by ▴ 340
20
votes
4
replies
14k
views
Tutorial: How To Install A Specific Cdf Package For Use In Bioconductor
bioconductor affymetrix
updated 7 months ago by 40k • written 10.5 years ago by 20k
9
votes
4
replies
4.0k
views
Tutorial: Unsupervised clustering on gene expression data
gene-expression clustering RNA-seq
6 weeks ago by Hamid Ghaedi 3.0k
19
votes
4
replies
8.6k
views
Tutorial: Rna Seq Experimental Design For Measuring Differential Gene Expression
RNA-seq
updated 7 months ago by 40k • written 10.6 years ago by 98k
12
votes
4
replies
2.0k
views
Tutorial: Tutorials for Library Normalization in DESeq2 and EdgeR
EdgeR DESeq2
updated 6 months ago by 40k • written 6.0 years ago by ▴ 590
28
votes
4
replies
4.0k
views
Tutorial: Modern Statistics for Modern Biology
statistics
updated 6 months ago by 40k • written 4.7 years ago by 26k
20
votes
4
replies
8.4k
views
Tutorial: DE analysis by edgeR
RNA-Seq R edgeR
updated 5 months ago by 40k • written 7.0 years ago by ★ 4.2k
10
votes
4
replies
10k
views
Tutorial: Using the MinION MinKNOW software on Ubuntu 1604
long-reads oxford-nanopore minion
updated 6 months ago by 40k • written 4.2 years ago by 5.5k
0
votes
3
replies
50k
views
Tutorial: Installation VMD on LINUX_64
gromacs VMD
updated 5 months ago by 40k • written 7.3 years ago by ▴ 10
3
votes
3
replies
8.3k
views
Tutorial: High Speed Downloading of SRA, SAM and Fastq Files
fastq sam Aspera-Connect sra
updated 4 months ago by 40k • written 5.8 years ago by ▴ 100
15
votes
3
replies
4.4k
views
Tutorial: NCBI blast tutorial
ncbi blast
updated 5 months ago by 40k • written 7.4 years ago by 11k
50
votes
3
replies
4.4k
views
Tutorial: [[ Please read before posting a question ::: How To Ask A Good Question ]]
how-to
updated 6 months ago by 40k • written 4.7 years ago by 76k
44
votes
3
replies
12k
views
Tutorial: A Wet-Lab Guide to 'what I wish I had known' for Computational Biology
bioinformatics computational-biology
updated 5 months ago by 40k • written 7.5 years ago by ★ 3.2k
6
votes
3
replies
5.5k
views
Tutorial: High Throughput Sequence Analysis With R And Bioconductor
bioconductor
updated 7 months ago by 40k • written 11.2 years ago by 98k
1
vote
3
replies
3.0k
views
Tutorial: resolving error of sspace_standard
software-error Assembly
updated 5 months ago by 40k • written 7.1 years ago by ▴ 300
5
votes
3
replies
5.0k
views
Tutorial: bam2rpkm by bedtools
bam RNA-Seq bedtools rpkm
updated 6 months ago by • 0 • written 5.9 years ago by ▴ 130
10
votes
3
replies
4.3k
views
Tutorial: Video: Alternative Splicing and Primer Design
RNA-Seq IGB
updated 8 months ago by 40k • written 9.0 years ago by ▴ 860
7
votes
3
replies
1.7k
views
Tutorial: Automated dbSNP lookup by rsID position, plus genome build liftover
rsid hg19 liftover hg38 dbsnp
updated 5 months ago by ▴ 110 • written 13 months ago by 86k
2
votes
3
replies
2.5k
views
Tutorial: It's about the journey, and not the destination
R network
updated 4 months ago by 40k • written 6.5 years ago by ★ 1.2k
1
vote
3
replies
686
views
Tutorial: Gibbs Sampling Algorithm Implementation for Searching DNA Motifs
montecarlo DNA motif gibbssampling splice
5 months ago by barslmn ★ 1.8k
3
votes
3
replies
2.2k
views
Tutorial: Generating count matrix for STAR counts in GDC v32.0 for RNA-Seq
GDC TCGABiolinks STAR
updated 7 months ago by 40k • written 17 months ago by ★ 3.3k
5
votes
3
replies
4.0k
views
Tutorial: Chip Seq Review Papers
chip-seq
updated 7 months ago by 40k • written 10.8 years ago by ▴ 80
6
votes
3
replies
4.3k
views
Tutorial: Principles and Workflow of 16S/18S/ITS Amplicon Sequencing
alignment sequencing RNA-seq gene
updated 6 months ago by 40k • written 4.9 years ago by ▴ 40
51
votes
3
replies
22k
views
Tutorial: Sam File Format - Lesser Known Tips And Tricks
sam
updated 7 months ago by 40k • written 10.7 years ago by ▴ 300
13
votes
3
replies
11k
views
Tutorial: Plotting the coverage and depth (Y-axis) statistics of a bam file along the genome (X-axis), using Samtools, awk and R.
genome plot coverage samtools
updated 5 weeks ago by ▴ 20 • written 6.5 years ago by ★ 1.6k
4
votes
3
replies
4.3k
views
Tutorial: How to get full taxonomy classification using taxize and myTAI
taxonomy R
updated 6 months ago by 40k • written 5.5 years ago by ★ 3.9k
9
votes
3
replies
4.0k
views
Tutorial: Ht Sequence Analysis With R And Bioconductor By The Bioinformatics Center At Uc Riverside
bioconductor
updated 7 months ago by 40k • written 11.1 years ago by 98k
11
votes
3
replies
1.3k
views
Tutorial: Creating great documentation for bioinformatics software
Software-Documentation
updated 5 months ago by 40k • written 7.2 years ago by 7.1k
2
votes
3
replies
1.8k
views
Tutorial: Help demonstrate reproducibility in bioinformatics with the GA4GH's tool execution Challenge
GA4GH Docker CWL Rabix
updated 5 months ago by 40k • written 6.6 years ago by ▴ 20
85
votes
2
replies
56k
views
6 follow
Tutorial: How To Ask Good Questions On Technical And Scientific Forums
how-to
updated 6 months ago by 40k • written 10.2 years ago by 11k
22
votes
2
replies
5.8k
views
Tutorial: Use a workflow management tool to manage your computational pipelines
workflow-management snakemake pipeline
updated 5 months ago by 40k • written 6.9 years ago by ★ 2.1k
4
votes
2
replies
2.2k
views
Tutorial: Apply beagle5.0 to make imputation and phasing under CentOS and PBS
beagle5.0 beagle
updated 6 months ago by 40k • written 4.3 years ago by ★ 9.3k
42
votes
2
replies
17k
views
Tutorial: Sequencing Technology Review Papers
sequencing papers
updated 7 months ago by 40k • written 11.1 years ago by 98k
1
vote
2
replies
1.2k
views
Tutorial: ViennaRNA package installation in Windows
windows rna mfold viennarna
updated 3 months ago by 40k • written 12 months ago by ▴ 20
325 results • Page 3 of 7
Recent Votes
Comment: How to create structural variants ground truth for alignment of two long-read ge
Comment: Low Alignment rate
Answer: How to retrieve LoF and missense variants in WES data?
Answer: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST
Seurat CellCycleScoring – confused about the proper order of operations when using SCTransform
Comment: Hisat2 index and alignment question
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Comment: Enrichment of mitochondrial and ribosomal pathways - an artifact? by ATpoint 76k
Generally these genes are highly expressed, so there would be some sort of a power bias. How do you do the DE analysis? Any cutoffs on mini…
Answer: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2 by David Langenberger 10k
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Answer: how to identify uniq genes between two gff files. by Juke34 8.2k
You can run `agat_sp_compare_two_annotations.pl` from [AGAT][1], you should get the information you are looking for. This method allow to c…
Comment: How to find out what adapters to remove after FastQC of RNAseq data? by ella • 0
Thank you for the fast help, I have the BBMap suite installed anyways and will try it out :)
Comment: How to make alpha diversity boxplot? by yeah • 0
thanks a lot! can't believe that is so simple
Comment: how to identify uniq genes between two gff files. by nikhil ▴ 10
yes got it, thank you very much.
Comment: SCENIC-openloom not working by kyriakds • 0
Hello, Did you find a solution in the end?
Comment: I have performed Trimmomatic run for adapter removal. QC report shows drop in th by Vijith ▴ 30
@swbarnes2, thanks for the response, by the way, can you tell me why/ how this happens during the sequencing process, and if it could negat…
Comment: how to identify uniq genes between two gff files. by Pierre Lindenbaum 157k
> can you explain this ?? yes. you should use options like `-u` . > Write original A entry once if any overlaps found in B. In other word…
Comment: how to extract unique snps in a vcf file by comparing with multiple vcf files by Pierre Lindenbaum 157k
so validate the answer to close the question please (Green tick on the left).
Comment: how to identify uniq genes between two gff files. by nikhil ▴ 10
hi Pierre Linderbaum, after extracting genes, I have 5846 genes in afile.bed and 4456 genes in bfile.bed , while using bedtools intersec…
Comment: how to extract unique snps in a vcf file by comparing with multiple vcf files by nikhil ▴ 10
thank you, bcftools isec is working well.
Comment: how to identify uniq genes between two gff files. by Pierre Lindenbaum 157k
please, comment or validate the answers to your previous questions: https://www.biostars.org/p/9573151/#9573158 ; https://www.biostars.org/…
Answer: how to identify uniq genes between two gff files. by Pierre Lindenbaum 157k
extract genes (e.g: awk '($3=="gene") {printf("%s\t%d\t%s\n",$1;int($4)-1,$5);}' ) from both files n sort, and use bedtools intersect with…
Answer: I have performed Trimmomatic run for adapter removal. QC report shows drop in th by swbarnes2 13k
G is the letter you get if there is no fluorescence. 75% of your reads have a lot of G. I don't think this run worked.
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