Limit : this year
all time today this week this month this year
139 results • Page 3 of 3
Sort: replies
Rank Views Votes Replies
1
vote
0
replies
228
views
Tutorial: Bulk RNA-seq: TCGA database preprocess
RNA-seq
updated 3 months ago by 43k • written 3 months ago by ▴ 120
2
votes
0
replies
1.2k
views
Tutorial: GEO data mining (III) - Gene pathway enrichment analysis with complete code sharing
geo R data-mining Gene-pathway-enrichment RNA-Seq
updated 10 months ago by 43k • written 15 months ago by ▴ 410
2
votes
0
replies
464
views
Tutorial: Understanding Hierarchical Clustering in R, Distance Measures, and Linkage Methods
clustering gene-expression rstats
updated 9 months ago by 43k • written 9 months ago by ★ 3.9k
0
votes
0
replies
1.6k
views
Tutorial: MWD (Mackinnon, White And Davidson) In R
R
updated 11 months ago by 43k • written 6.2 years ago by ▴ 10
4
votes
0
replies
943
views
Tutorial: How to make a heatmap in R and deep understand it
heatmap r
11 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
285
views
Tutorial: Single-cell RNA-seq: Preprocessing: Preprocessing the data of scRNA-seq with omicverse-2
scRNA-seq
updated 3 months ago by 43k • written 3 months ago by ▴ 120
0
votes
0
replies
656
views
Tutorial: How to start disease research quickly and easily?
proteins pathways disease research-design genes
10 months ago by Coremine Medical ▴ 20
0
votes
0
replies
3.1k
views
Tutorial: Normality Test For JB (Jarque Bera) Test R Commander
Jarque-Bera-Test R-Commander
updated 11 months ago by 43k • written 6.3 years ago by ▴ 10
1
vote
0
replies
1.4k
views
Tutorial: Fall 2017 Introduction to Human Genomics for Clinical Informaticists
genome
updated 11 months ago by 43k • written 6.3 years ago by ▴ 90
2
votes
0
replies
1.5k
views
Tutorial: Webinar: Extracting research evidence from publications
text-mining ontology pubmed
updated 11 months ago by 43k • written 6.1 years ago by ▴ 60
2
votes
0
replies
2.1k
views
Tutorial: How to display Agilent CGH array in IGV
IGV CGH
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.4k
0
votes
0
replies
1.4k
views
Tutorial: Data Panel In R Commander
R
updated 11 months ago by 43k • written 6.4 years ago by ▴ 10
7
votes
0
replies
585
views
Tutorial: Polygenic Risk Score Calculation
genetic-burden r prs ggplot glm
8 months ago by barslmn ★ 2.1k
0
votes
0
replies
232
views
Tutorial: Single-cell RNA-seq: Annotation: Celltype auto annotation with SCSA-3
scRNA-seq SCSA
updated 3 months ago by 43k • written 3 months ago by ▴ 120
1
vote
0
replies
805
views
Tutorial: List of Machine Learning-Based Scoring Function Papers
machine-learning docking papers
updated 5 months ago by 43k • written 13 months ago by ▴ 10
1
vote
0
replies
254
views
Tutorial: Single-cell RNA-seq: Annotation: Celltype auto annotation with SCSA
scRNA-seq SCSA
updated 3 months ago by 43k • written 3 months ago by ▴ 120
0
votes
0
replies
1.6k
views
Tutorial: PLS SEM (Partial Least Square Sructural Equation Modeling) Analysis WarpPLS 6
R
updated 11 months ago by 43k • written 6.2 years ago by ▴ 10
2
votes
0
replies
713
views
Tutorial: best practices for single-cell RNAseq analysis
cell single scRNAseq
10 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
191
views
Tutorial: Parsing HMMER output
HMMER
updated 25 days ago by 141k • written 25 days ago by ▴ 140
5
votes
0
replies
1.6k
views
Tutorial: GEO data mining (IB) - Downloading Sequence Read Archive (SRA) raw data
geo RNA-Seq data-mining SRA
updated 10 months ago by 43k • written 15 months ago by ▴ 410
3
votes
0
replies
2.2k
views
Tutorial: Deep Learning for Cancer Immunotherapy
keras tensorflow
updated 11 months ago by 43k • written 6.2 years ago by 22k
1
vote
0
replies
599
views
Tutorial: How to make a perfect heatmap using RNAseq data
heatmap RNAseq rstats
10 months ago by Ming Tommy Tang ★ 3.9k
2
votes
0
replies
3.1k
views
Tutorial: How to read multiple matrices from GEO into R and make multiple Seurat objects and merge them into a single object.
unix Seurat single-cell rstats
updated 9 months ago by 43k • written 9 months ago by ★ 3.9k
0
votes
0
replies
2.2k
views
Tutorial: Transforming (Transformation) Data LN, Log, SQRT In R Commander
R
updated 11 months ago by 43k • written 6.2 years ago by ▴ 10
1
vote
0
replies
259
views
Tutorial: How to Use Biomart to Find Mouse Orthologs for Human Genes
ids gene bioconductor
3 months ago by Ming Tommy Tang ★ 3.9k
3
votes
0
replies
206
views
Tutorial: Premade library preparation – considerations, tips and tricks (IA)
Premade-library Illumina NovaSeqX
7 weeks ago by Novogene ▴ 410
0
votes
0
replies
230
views
Tutorial: Single-cell RNA-seq: Annotation: Celltype auto annotation with SCSA-2
scRNA-seq SCSA
updated 3 months ago by 43k • written 3 months ago by ▴ 120
2
votes
0
replies
373
views
Tutorial: Bulk RNA-seq: WGCNA (Weighted gene co-expression network analysis) analysis
WGCNA RNA-seq
updated 3 months ago by 43k • written 3 months ago by ▴ 120
0
votes
0
replies
449
views
Tutorial: Using easyPubMed and scholar package to get all citations of your paper
scholar easyPubMed
5 months ago by rohitsatyam102 ▴ 840
0
votes
0
replies
229
views
Tutorial: Bulk RNA-seq: Batch correction in Bulk RNA-seq or microarray data
python RNA-seq batch-correction
updated 3 months ago by 43k • written 3 months ago by ▴ 120
1
vote
0
replies
497
views
Tutorial: How to convert raw counts to TPM for TCGA data and make a heatmap across cancer types
RNAseq heatmap rstats TCGA
5 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
644
views
Tutorial: How to read all files into a single dataframe (merge all RNAseq count table)
RNA-seq rstats
updated 9 months ago by 43k • written 9 months ago by ★ 3.9k
1
vote
0
replies
307
views
Tutorial: Single-cell RNA-seq: Preprocessing: Data integration and batch correction
scRNA-seq
updated 3 months ago by 43k • written 3 months ago by ▴ 120
1
vote
0
replies
673
views
Tutorial: How to convert gene ids in R
computational-biology gene-id rstats
updated 9 months ago by 43k • written 9 months ago by ★ 3.9k
0
votes
0
replies
8.1k
views
Tutorial: Multicollinearity VIF (Variance Inflation Factor) Analysis in Panel data EVIEWS 9
R eviews
updated 11 months ago by 43k • written 6.2 years ago by ▴ 10
4
votes
0
replies
754
views
Tutorial: How to do GSEA in R for RNAseq data
gsea RNAseq rstats
9 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
326
views
Tutorial: 4 CITE-seq tutorials
CTIE-seq
3 months ago by Ming Tommy Tang ★ 3.9k
2
votes
0
replies
1.4k
views
Tutorial: Principal Component Analysis (PCA ON T-BIOINFO)
RNA-Seq next-gen
updated 10 months ago by 43k • written 5.8 years ago by ▴ 340
1
vote
0
replies
676
views
Tutorial: How to pre-process scRNAseq data from fastq to count matrix with two lines of code
unix scRNA-seq single-cell rstats
updated 9 months ago by 43k • written 9 months ago by ★ 3.9k
139 results • Page 3 of 3
Recent Votes
Comment: Integration of transcriptomics and proteomics: difficult matchin names
BRAKER3 genome annotation
BRAKER3 genome annotation
Answer: read depth using samtools
Answer: BRAKER3 genome annotation
Comment: RNAseq of primary tumor and metastases in two different organ
Comment: RNAseq of primary tumor and metastases in two different organ
Recent Locations • All
Germany, just now
Russia, just now
Whitefish, MT, 1 minute ago
United States, 1 minute ago
Belgium, 2 minutes ago
United States, 2 minutes ago
United States, 3 minutes ago
Recent Awards • All
Student to ntsopoul ▴ 60
Popular Question to Matteo Ungaro ▴ 100
Scholar to Axzd ▴ 70
Popular Question to rbronste ▴ 420
Popular Question to Basti ★ 2.0k
Popular Question to predeus ★ 1.9k
Scholar to ATpoint 81k
Recent Replies
Comment: Integration of transcriptomics and proteomics: difficult matchin names by GenoMax 141k
This table from Jackson labs that correlates many mouse identifiers with external databases will help. Look at the headers of the columns t…
Comment: Rename multiple fastq.gz files by bk11 ★ 2.3k
I just gave hint in the comment above. Please try this, it should work for you. #!/bin/bash for file in `ls *fastq.gz`; do f…
Comment: BRAKER3 genome annotation by andorjkiss ▴ 40
I also have this exact same question. I have my entire genome annotated and a braker.GTF file, but without protein "product" names.
Answer: trouble using sequenceTubeMap in chromium installed on WSL by anovak ▴ 80
`Error: spawn vg ENOENT` means that Node could not find the `vg` command when it tried to run it. It got back [the `ENOENT` error code](htt…
Answer: List of species in RepeatMasker Tool (species parameter) by Bioinfotec ▴ 10
From 4.1.1 version, The utilities 'queryTaxonomyDatabase.pl' and 'queryRepeatDatabase.pl' are no longer included, since that data…
Comment: RNAseq of primary tumor and metastases in two different organ by matteo.levorato • 0
Yeah, I heard that for cycle are not super suggested in R. I can't use tibble since my bone df has a different size than lung df.. However …
Comment: SnpEff annotates coding duplication as intronic? by Ram 43k
Can you show us the output from VEP and snpEff? They could be annotating two different transcripts. EDIT: I ran VEP quickly on this varian…
Comment: Help/Direction Needed for Data Analysis of RNA by dsull ★ 5.8k
Honestly, any popular aligner will do: STAR, bowtie2, bwa, etc. Just make a FASTA file containing your sequences of interest, build an inde…
Comment: Rename multiple fastq.gz files by Jérémie • 0
Thank you! Just a stupid question, when I run this command it gives me the list of the names expected but does not actually change the name…
Comment: RNAseq of primary tumor and metastases in two different organ by BioinfGuru ★ 1.7k
That's normal. Anything lower than the lower limit of R's numerical value range is rounded to 0. No resolution is required. Just be careful…
Answer: Rename multiple fastq.gz files by bk11 ★ 2.3k
This will be a very rough way of doing it- #listing the fastq files ls *fastq.gz JM1-44589688_S693_L001_R1_001.fastq.gz JM110-…
Comment: RNAseq of primary tumor and metastases in two different organ by matteo.levorato • 0
on top of this I have many genes with a padj equal to zero, is this coming from an error or it's just that the value is too small for RStud…
Comment: Bwa sampe - BGI by ATpoint 81k
Honestly, use bwa mem like everyone else and call it a day. bwa mem ref.fa X1.fq.gz X_2.fq.gz | samtools sort -o sorted.bam See the b…
Comment: Bwa sampe - BGI by lorena9132 • 0
Hello, thank you very much for your response. I was referring more to using these options: -a INT Maximum insert size for a read pair …
Comment: gene body coverage with RSeqQC by BioinfGuru ★ 1.7k
Take a look at [this post][1] ... it might give a clue. Alternatively, for my installation the qcmodule is located at: /home/bioinfguru/…
Traffic: 2695 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6