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411 results • Page
4 of 9
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Views
Votes
Replies
22
votes
2
replies
5.8k
views
Tutorial:
Extracting genomic feature sequences from GTF/GFF files with AGAT
extract
GTF
GFF
sequence
updated 19 months ago by
eggrandio
▴ 40 • written 3.0 years ago by
Juke34
8.5k
6
votes
3
replies
5.7k
views
Tutorial:
High Throughput Sequence Analysis With R And Bioconductor
bioconductor
updated 14 months ago by
Ram
43k • written 11.8 years ago by
Istvan Albert
100k
6
votes
11
replies
5.7k
views
6 follow
Tutorial:
Add count numbers to headers in a fasta file
genome
updated 14 months ago by
Ram
43k • written 7.4 years ago by
wu.zhiqiang.1020
▴ 50
20
votes
6
replies
5.6k
views
Tutorial:
Open Targets and programmatic access
open-targets
disease
API
drug
updated 13 months ago by
Ram
43k • written 7.6 years ago by
Denise CS
★ 5.2k
9
votes
4
replies
5.5k
views
Tutorial:
Unsupervised clustering on gene expression data
gene-expression
clustering
RNA-seq
8 months ago by
Hamid Ghaedi
3.2k
9
votes
2
replies
5.5k
views
Tutorial:
From Data import to Normalization in Microarray Analysis using in R (Part I)
gene
R
updated 12 months ago by
Ram
43k • written 7.9 years ago by
majuang66
▴ 140
23
votes
8
replies
5.4k
views
Tutorial:
A Practical (And Opinionated) Guide To Analyzing Human Methylation 450K Data
450K
methylation
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
brentp
24k
0
votes
2
replies
5.4k
views
Tutorial:
Install AMOS on Ubuntu 13.10
sequencing
alignment
software-error
next-gen
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
Medhat
9.7k
5
votes
3
replies
5.4k
views
Tutorial:
bam2rpkm by bedtools
bam
RNA-Seq
bedtools
rpkm
updated 13 months ago by
toxin08x
• 0 • written 6.5 years ago by
jmzeng1314
▴ 130
12
votes
4
replies
5.4k
views
Tutorial:
*FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
linux
R
updated 14 months ago by
Ram
43k • written 3.2 years ago by
garden_giessen
▴ 130
7
votes
0
replies
5.3k
views
Tutorial:
Mothur Analyzing 16S Of Ngs High Through-Put Sequencing
next-gen
updated 14 months ago by
Ram
43k • written 11.9 years ago by
Shuixia100
▴ 120
6
votes
0
replies
5.3k
views
Tutorial:
How to download GEO data Quickly and easily
geo
RNA-Seq
R
data-mining
14 months ago by
Novogene
▴ 420
3
votes
2
replies
5.3k
views
Tutorial:
Reorder Vcf Files
vcf
updated 14 months ago by
Ram
43k • written 11.0 years ago by
chris.mit7
▴ 60
6
votes
10
replies
5.2k
views
Tutorial:
Differentially methylated regions: Easy & Fast Identification and ANnoTation
DMR
dna-methylation
updated 13 months ago by
Ram
43k • written 6.2 years ago by
dec986
▴ 370
13
votes
3
replies
5.1k
views
Tutorial:
Video: Visualization of whole genome DNA methylation data in IGB
Bismark
BS-Seq
RNA-Seq
IGB
updated 23 months ago by
Ram
43k • written 9.1 years ago by
Nowlan Freese
▴ 860
12
votes
1
reply
5.0k
views
Tutorial:
RepSeq data processing and analysis
immunology
tcr
repseq
sequencing
repertoire
updated 18 months ago by
Ram
43k • written 8.7 years ago by
mikhail.shugay
3.5k
12
votes
6
replies
5.0k
views
Tutorial:
sharing some naive codes for microarray normalization in R with whom are too new in R alike me
R
updated 21 months ago by
Ram
43k • written 8.2 years ago by
zizigolu
★ 4.3k
6
votes
2
replies
5.0k
views
Tutorial:
Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates without alignment), mutate (create mutant genomes) and other miscellaneou…
bbmap
4 months ago by
GenoMax
141k
10
votes
0
replies
4.9k
views
Tutorial:
Yes .. BBMap can do that! - Part I : bbmap (aligner), bbduk (scan/trim), repair (fix PE reads) and reformat (format conversions)
bbmap
updated 13 months ago by
Ram
43k • written 3.3 years ago by
GenoMax
141k
50
votes
3
replies
4.8k
views
Tutorial:
[[ Please read before posting a question ::: How To Ask A Good Question ]]
how-to
updated 13 months ago by
Ram
43k • written 5.3 years ago by
ATpoint
82k
3
votes
0
replies
4.8k
views
Tutorial:
Comparing 454, Iontorrent And Miseq
454
miseq
ion-torrent
updated 14 months ago by
Ram
43k • written 11.9 years ago by
Istvan Albert
100k
7
votes
0
replies
4.7k
views
Tutorial:
How To Perform A Hierarchical Clustering Using Interactive Heatmaps From Gitools?
clustering
updated 13 months ago by
Ram
43k • written 10.1 years ago by
Michi
▴ 990
2
votes
0
replies
4.7k
views
Tutorial:
Calculation of TSS Scores for ATAC-seq Data
next-gen-sequencing
updated 13 months ago by
Ram
43k • written 4.8 years ago by
Sael
▴ 20
16
votes
3
replies
4.7k
views
Tutorial:
NCBI blast tutorial
ncbi
blast
updated 12 months ago by
Ram
43k • written 8.0 years ago by
Eric Normandeau
11k
15
votes
4
replies
4.6k
views
Tutorial:
RNASeq tutorial for gene differential expression analysis
Transcriptomics
bioconductor
RNA-Seq
R
updated 13 months ago by
Ram
43k • written 3.7 years ago by
Thind amarinder
▴ 340
1
vote
0
replies
4.6k
views
Tutorial:
Molecular docking, estimating free energies of binding, and a tutorial for how to use AutoDock's semi-empirical force field
free-energy
docking
scoring
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
se.raschka
▴ 150
4
votes
3
replies
4.6k
views
Tutorial:
How to get full taxonomy classification using taxize and myTAI
taxonomy
R
updated 13 months ago by
Ram
43k • written 6.0 years ago by
Daniel
★ 4.0k
6
votes
3
replies
4.5k
views
Tutorial:
Principles and Workflow of 16S/18S/ITS Amplicon Sequencing
alignment
sequencing
RNA-seq
gene
updated 13 months ago by
Ram
43k • written 5.5 years ago by
contact
▴ 40
10
votes
3
replies
4.5k
views
Tutorial:
Video: Alternative Splicing and Primer Design
RNA-Seq
IGB
updated 15 months ago by
Ram
43k • written 9.6 years ago by
Nowlan Freese
▴ 860
29
votes
4
replies
4.5k
views
Tutorial:
Modern Statistics for Modern Biology
statistics
updated 13 months ago by
Ram
43k • written 5.3 years ago by
Jean-Karim Heriche
27k
3
votes
4
replies
4.5k
views
Tutorial:
gencore: a tool to reduce sequencing noises by generating consensus reads
consensus
OpenGene
sequencing-noise
updated 11 months ago by
Ram
43k • written 6.0 years ago by
chen
★ 2.5k
9
votes
0
replies
4.4k
views
Tutorial:
Analysis of dbGaP data on the cloud
AWS
dbGaP
Cloud
updated 21 months ago by
Ram
43k • written 8.2 years ago by
Malachi Griffith
19k
16
votes
3
replies
4.3k
views
Tutorial:
Methylation Analysis Tutorial in R_part2
cancer
methylation
RNA-Seq
R
updated 3.1 years ago by
zhuanggj706
• 0 • written 3.6 years ago by
Hamid Ghaedi
3.2k
9
votes
3
replies
4.2k
views
Tutorial:
Ht Sequence Analysis With R And Bioconductor By The Bioinformatics Center At Uc Riverside
bioconductor
updated 14 months ago by
Ram
43k • written 11.7 years ago by
Istvan Albert
100k
9
votes
9
replies
4.2k
views
Tutorial:
Determine % of reference genome covered by aligned SAM/BAM
reference-coverage
ngs
updated 11 months ago by
Ram
43k • written 6.6 years ago by
Kevin Blighe
87k
5
votes
3
replies
4.2k
views
Tutorial:
Chip Seq Review Papers
chip-seq
updated 14 months ago by
Ram
43k • written 11.4 years ago by
prtimilsina
▴ 80
6
votes
2
replies
4.2k
views
Tutorial:
GATK method for filtering vcf lines using GT values at all or multisample level.
genome
vcf
genotype
variant-filtration
updated 11 months ago by
Ram
43k • written 6.9 years ago by
kirannbishwa01
★ 1.6k
5
votes
1
reply
4.2k
views
Tutorial:
Mini-tutorial: How to fix too-long sequence names in SyMAP
alignment
updated 16 months ago by
Ram
43k • written 8.8 years ago by
Philipp Bayer
8.3k
10
votes
6
replies
4.1k
views
Tutorial:
CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation
corlevelplot
updated 29 days ago by
Ram
43k • written 6.2 years ago by
Kevin Blighe
87k
20
votes
14
replies
4.0k
views
Tutorial:
Video-tutorials: How to get started using EaSeq for interactive ChIP-seq data visualization and exploration (Windows)
ChIP-Seq
visualization
Windows
EaSeq
updated 12 months ago by
Ram
43k • written 8.0 years ago by
Mads Lerdrup
▴ 460
15
votes
1
reply
4.0k
views
Tutorial:
Dealing with nanopore fast5 files compressed with vbz
hdf5
nanopore
fast5
vbz
MinKNOW
updated 20 months ago by
Assa Yeroslaviz
★ 1.8k • written 2.3 years ago by
dariober
14k
7
votes
2
replies
3.9k
views
Tutorial:
How to extract fastq files from SRA data that contains both paired and unpaired reads
fastq-dump
sra
updated 12 months ago by
Ram
43k • written 8.1 years ago by
thomaskuilman
▴ 850
3
votes
2
replies
3.9k
views
Tutorial:
Galaxy Tutorial on ChIP-seq
galaxy
ChIP-Seq
updated 11 months ago by
Ram
43k • written 7.0 years ago by
anton
▴ 30
3
votes
1
reply
3.7k
views
Tutorial:
Importance of Array Quality Control - arrayQualityMetrics (PART I)
gene
R
updated 12 months ago by
Ram
43k • written 7.8 years ago by
majuang66
▴ 140
1
vote
0
replies
3.7k
views
Tutorial:
embarrassingly easy parallel in Python, Perl and R
parallel
updated 20 months ago by
Ram
43k • written 8.4 years ago by
Echo
▴ 70
10
votes
2
replies
3.7k
views
Tutorial:
Graph visualization with igraph in R
Visualization
igraph
Graph
R
Network
updated 11 months ago by
Ram
43k • written 7.0 years ago by
Jean-Karim Heriche
27k
9
votes
14
replies
3.7k
views
6 follow
Tutorial:
Install required dependencies for GATK4 on remote server without root privilege
gatk
updated 18 months ago by
Angelina_G
▴ 10 • written 2.2 years ago by
thehung92phuyen
▴ 40
28
votes
0
replies
3.6k
views
Tutorial:
Building Docker images
singularity
docker
container
21 months ago by
ATpoint
82k
0
votes
0
replies
3.6k
views
Tutorial:
Park Test for Heteroskedasticity In R Commander
R
Park-Test
updated 11 months ago by
Ram
43k • written 6.2 years ago by
helgasaraswati
▴ 10
3
votes
0
replies
3.6k
views
Tutorial:
Video Tutorial On Conducting Whole-Exome Sequencing Research
exome-sequencing
updated 14 months ago by
Ram
43k • written 10.8 years ago by
Medhat
9.7k
411 results • Page
4 of 9
Recent Votes
Comment: clustalo - align milions of short seq, memory issue
Answer: clustalo - align milions of short seq, memory issue
Comment: downloading genomes in fasta format from accession ids
Comment: PCA plot (Suggestions Needed)
Answer: PCA plot (Suggestions Needed)
PCA plot (Suggestions Needed)
Comment: To get p-values for the TPM
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Unfortunately, it's not working for me either, and the web site doesn't exist anymore. You might try reaching out to the authors, but I kn…
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JUST GIVE THE ANSWER! Here is the solution: ```bash aria2c -c -s 4 -j 4 \ https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/pd…
Comment: PCA plot (Suggestions Needed)
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Aaliya
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I have actually used DESeq2 data.
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So, why? I have 18GB of data, and when -c=0.95, the run ends in about two days, while when -c=0.9, it has been three days and only a little…
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Hi GenoMax and Mensur Dlakic, thank you for your feedback. I'm changing approach in the way to work with a smaller number of seq.
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duplicate of your previous question: https://www.biostars.org/p/9592646/ why using R when there are shell-based tools like VEP ? slivar , …
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Hi I am trying to install the software but I didn't find the way to clone from github. Could you help me with the pipeline of instruction…
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14k
I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
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swbarnes2
14k
Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
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biochugs
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Thanks for the input. I'll continue to think of more ideas that may be achievable.
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Jeremy
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You could also try kernel PCA, which is a non-linear form of PCA, although this will be more time-consuming.
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I have unstranded RNA-seq data. Please share the tool with me, if you do not mind.
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Everything that @f1f58aed said, plus that there may be no data manipulation that will give you the clusters you expected. Sometimes there a…
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