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<prev • 34 results • page 1 of 2 • next >
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splicing with UMI barcodes - paired end illumina sequencing
illumina umi umitools splicing star written 10 weeks ago by snishtala03 • 40
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2
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153
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from BAM to BED passing cell barcodes
bed umi bam scrna barcode written 3 months ago by BrunoGiotti • 110
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1
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356
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1
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Expression cutoff for UMI
umi gene expression written 4 months ago by JulianC • 10 • updated 4 months ago by i.sudbery ♦ 8.4k
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272
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How to analyze DNA data with UMI
bioinformatics umi next-gen sequencing written 4 months ago by deniselavezzari • 0 • updated 4 months ago by genomax ♦ 87k
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190
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Long read UMI
umi onp pacbio fastp written 4 months ago by lager • 0
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347
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Downsampling UMI reads
umi next-gen rna-seq written 6 months ago by Bedirhan • 0 • updated 6 months ago by Kevin Blighe ♦ 63k
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380
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1
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UMI read consensus calling
umi next-gen unique molecular identifier nanopore written 6 months ago by SemiQuant • 70 • updated 6 months ago by i.sudbery ♦ 8.4k
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277
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How to remove duplicate reads / create consensus reads based on umi tags in 2nd fastq file?
umi written 6 months ago by William • 4.7k
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3
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381
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7 follow
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Bulk RNA-Seq pipeline suggestion incorporating UMIs
bulk umi rna-seq written 7 months ago by steveh • 30 • updated 7 months ago by swbarnes2 ♦ 8.1k
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355
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UMI on the fastq header
illumina umi fastq umi-tools rna-seq written 8 months ago by Ati • 30
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Forum: Help make UMI-tools even better - take our survey
umi survey forum umi-tools written 9 months ago by i.sudbery ♦ 8.4k
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743
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Consensus reads from UMIs
umi dna-seq deduplication written 11 months ago by graeme.thorn • 50 • updated 11 months ago by finswimmer ♦ 13k
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249
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Question about deduplication with UMI-tools
umi deduplication sequencing written 12 months ago by Chadi Saad • 70 • updated 12 months ago by i.sudbery ♦ 8.4k
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265
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how to align sequences with extra bases in 5'
umi alignment written 14 months ago by hsu • 10
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UMI with MACS
macs umi chip-seq written 15 months ago by Richard • 570 • updated 15 months ago by i.sudbery ♦ 8.4k
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680
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Formating RNA-seq with UMIs in unmapped BAM files to UMI-tools compatible FASTQ files
pre-processing umi rna-seq written 16 months ago by graeme.thorn • 50
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Tool: MAGERI: a software tool for calling rare variants and detecting circulating tumor DNA from UMI-tagged high-throughput sequencing data
rare variant umi resequencing ctdna tool written 3.2 years ago by mikhail.shugay ♦ 3.4k • updated 18 months ago by alons • 270
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How to deduplicate UMI with mapping shift ?
umi written 18 months ago by tatsuomano • 10 • updated 18 months ago by i.sudbery ♦ 8.4k
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10 follow
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De-duplicate UMI at FASTQ level
umi fastq written 21 months ago by jomo018 • 610 • updated 18 months ago by Rituriya • 30
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9 follow
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add UMI sequences to fastq read name
illumina umi fastq written 19 months ago by User6891 • 270 • updated 18 months ago by i.sudbery ♦ 8.4k
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miRNA with UMI - any papers showing this improves accuracy?
umi mirna written 2.2 years ago by Richard • 570 • updated 18 months ago by Rituriya • 30
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mirdeep2: UMI information lost when reads are collapsed
umi mirdeep2 mirna written 19 months ago by Rituriya • 30
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Is Kallisto able to deal with UMIs and paired-end RNASeq?
umi kallisto rna-seq written 20 months ago by antgomo • 30 • updated 20 months ago by genomax ♦ 87k
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665
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how to find the UMi position?
umi alignment written 20 months ago by DNAseq • 0 • updated 20 months ago by h.mon ♦ 30k
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Faster UMI extraction from scRNA-Seq data
scrna-seq umi umi_tools rna-seq written 22 months ago by paulranum11 • 60 • updated 22 months ago by benformatics • 1.7k
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How to move UMI tags to the header
umi alignment rna-seq written 22 months ago by newbinf • 0
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Question about deduplication with UMI-tools
umi rna-seq written 2.0 years ago by GSAENZDEPIP • 20 • updated 2.0 years ago by genomax ♦ 87k
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Tutorial: Use fastp to preprocess FASTQ data with unique molecular identifer (UMI) integrated
umi fastq tutorial fastp written 2.7 years ago by chen • 2.1k
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News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
rna-seq news ngs strand ngs umi dna-seq written 2.7 years ago by Genomics • 70 • updated 2.7 years ago by WouterDeCoster ♦ 44k
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7 follow
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Tool: UMI-Tools 0.5, now with tools for cell barcoded scRNA-seq
umi rna-seq single cell tool written 3.0 years ago by i.sudbery ♦ 8.4k
<prev • 34 results • page 1 of 2 • next >
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