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<prev • 23 results • page 1 of 1 • next >
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Consensus reads from UMIs
umi dna-seq deduplication written 9 days ago by graeme.thorn • 40 • updated 8 days ago by finswimmer ♦ 12k
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80
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Question about deduplication with UMI-tools
umi deduplication sequencing written 4 weeks ago by Chadi Saad • 60 • updated 4 weeks ago by i.sudbery ♦ 5.2k
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1
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how to align sequences with extra bases in 5'
umi alignment written 12 weeks ago by hsu • 10
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244
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UMI with MACS
macs umi chip-seq written 3 months ago by Richard • 560 • updated 3 months ago by i.sudbery ♦ 5.2k
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Formating RNA-seq with UMIs in unmapped BAM files to UMI-tools compatible FASTQ files
pre-processing umi rna-seq written 5 months ago by graeme.thorn • 40
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Tool: MAGERI: a software tool for calling rare variants and detecting circulating tumor DNA from UMI-tagged high-throughput sequencing data
rare variant umi resequencing ctdna tool written 2.3 years ago by mikhail.shugay ♦ 3.3k • updated 6 months ago by alons • 270
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How to deduplicate UMI with mapping shift ?
umi written 7 months ago by tatsuomano • 10 • updated 7 months ago by i.sudbery ♦ 5.2k
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6 follow
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De-duplicate UMI at FASTQ level
umi fastq written 10 months ago by jomo018 • 480 • updated 7 months ago by Rituriya • 20
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7 follow
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add UMI sequences to fastq read name
illumina umi fastq written 7 months ago by User6891 • 250 • updated 7 months ago by i.sudbery ♦ 5.2k
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miRNA with UMI - any papers showing this improves accuracy?
umi mirna written 14 months ago by Richard • 560 • updated 7 months ago by Rituriya • 20
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mirdeep2: UMI information lost when reads are collapsed
umi mirdeep2 mirna written 7 months ago by Rituriya • 20
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Is Kallisto able to deal with UMIs and paired-end RNASeq?
umi kallisto rna-seq written 8 months ago by antgomo • 30 • updated 8 months ago by genomax ♦ 70k
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how to find the UMi position?
umi alignment written 9 months ago by DNAseq • 0 • updated 9 months ago by h.mon ♦ 27k
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Faster UMI extraction from scRNA-Seq data
scrna-seq umi umi_tools rna-seq written 11 months ago by paulranum11 • 40 • updated 11 months ago by benformatics • 1.1k
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How to move UMI tags to the header
umi alignment rna-seq written 11 months ago by newbinf • 0
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Question about deduplication with UMI-tools
umi rna-seq written 13 months ago by GSAENZDEPIP • 10 • updated 13 months ago by genomax ♦ 70k
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Tutorial: Use fastp to preprocess FASTQ data with unique molecular identifer (UMI) integrated
umi fastq tutorial fastp written 21 months ago by chen • 1.9k
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News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
rna-seq news ngs strand ngs umi dna-seq written 21 months ago by Genomics • 70 • updated 21 months ago by WouterDeCoster ♦ 40k
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7 follow
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Tool: UMI-Tools 0.5, now with tools for cell barcoded scRNA-seq
umi rna-seq single cell tool written 2.0 years ago by i.sudbery ♦ 5.2k
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Extract consensus sequence reads (collapse PCR duplicates) from bam
umi pcr consensus sequence written 2.2 years ago by Nicolas Rosewick ♦ 8.0k
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Public datasets with UMI
adapters umi sequencing written 2.3 years ago by ognjen011 • 170
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UMI for Exome Target Sequencing
genome umi next-gen sequencing written 3.4 years ago by alessandro.pastore • 30 • updated 3.4 years ago by WouterDeCoster ♦ 40k
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Tool: umitools - working with UMI incorporated data
umi tool sequencing written 5.1 years ago by Joe Brown • 70
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