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<prev • 25 results • page 1 of 1 • next >
2
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0
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89
views
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UMI on the fastq header
illumina umi fastq umi-tools rna-seq written 6 days ago by Ati • 30
4
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0
answers
108
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0
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Forum: Help make UMI-tools even better - take our survey
umi survey forum umi-tools written 6 weeks ago by i.sudbery ♦ 6.3k
3
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1
answer
294
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1
answer
Consensus reads from UMIs
umi dna-seq deduplication written 3 months ago by graeme.thorn • 40 • updated 3 months ago by finswimmer ♦ 13k
0
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1
answer
147
views
1
answer
Question about deduplication with UMI-tools
umi deduplication sequencing written 4 months ago by Chadi Saad • 60 • updated 4 months ago by i.sudbery ♦ 6.3k
0
votes
1
answer
181
views
1
answer
how to align sequences with extra bases in 5'
umi alignment written 6 months ago by hsu • 10
1
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1
answer
342
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1
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UMI with MACS
macs umi chip-seq written 7 months ago by Richard • 570 • updated 7 months ago by i.sudbery ♦ 6.3k
3
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0
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399
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0
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Formating RNA-seq with UMIs in unmapped BAM files to UMI-tools compatible FASTQ files
pre-processing umi rna-seq written 8 months ago by graeme.thorn • 40
4
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0
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2.0k
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Tool: MAGERI: a software tool for calling rare variants and detecting circulating tumor DNA from UMI-tagged high-throughput sequencing data
rare variant umi resequencing ctdna tool written 2.6 years ago by mikhail.shugay ♦ 3.4k • updated 10 months ago by alons • 270
2
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1
answer
529
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1
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How to deduplicate UMI with mapping shift ?
umi written 10 months ago by tatsuomano • 10 • updated 10 months ago by i.sudbery ♦ 6.3k
5
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2
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2.2k
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6 follow
2
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De-duplicate UMI at FASTQ level
umi fastq written 13 months ago by jomo018 • 520 • updated 10 months ago by Rituriya • 30
6
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3
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1.3k
views
7 follow
3
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add UMI sequences to fastq read name
illumina umi fastq written 11 months ago by User6891 • 250 • updated 10 months ago by i.sudbery ♦ 6.3k
1
vote
1
answer
770
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1
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miRNA with UMI - any papers showing this improves accuracy?
umi mirna written 18 months ago by Richard • 570 • updated 10 months ago by Rituriya • 30
0
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0
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427
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mirdeep2: UMI information lost when reads are collapsed
umi mirdeep2 mirna written 11 months ago by Rituriya • 30
1
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0
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617
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0
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Is Kallisto able to deal with UMIs and paired-end RNASeq?
umi kallisto rna-seq written 12 months ago by antgomo • 30 • updated 12 months ago by genomax ♦ 75k
0
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0
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514
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0
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how to find the UMi position?
umi alignment written 12 months ago by DNAseq • 0 • updated 12 months ago by h.mon ♦ 28k
4
votes
1
answer
679
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1
answer
Faster UMI extraction from scRNA-Seq data
scrna-seq umi umi_tools rna-seq written 14 months ago by paulranum11 • 40 • updated 14 months ago by benformatics • 1.2k
2
votes
1
answer
773
views
1
answer
How to move UMI tags to the header
umi alignment rna-seq written 14 months ago by newbinf • 0
0
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0
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2.1k
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0
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Question about deduplication with UMI-tools
umi rna-seq written 16 months ago by GSAENZDEPIP • 10 • updated 16 months ago by genomax ♦ 75k
1
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0
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3.2k
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0
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Tutorial: Use fastp to preprocess FASTQ data with unique molecular identifer (UMI) integrated
umi fastq tutorial fastp written 2.0 years ago by chen • 1.9k
0
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0
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1.1k
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0
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News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
rna-seq news ngs strand ngs umi dna-seq written 2.1 years ago by Genomics • 70 • updated 2.1 years ago by WouterDeCoster ♦ 42k
11
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0
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3.0k
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7 follow
0
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Tool: UMI-Tools 0.5, now with tools for cell barcoded scRNA-seq
umi rna-seq single cell tool written 2.3 years ago by i.sudbery ♦ 6.3k
0
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0
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2.1k
views
0
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Extract consensus sequence reads (collapse PCR duplicates) from bam
umi pcr consensus sequence written 2.5 years ago by Nicolas Rosewick ♦ 8.5k
3
votes
2
answers
931
views
2
answers
Public datasets with UMI
adapters umi sequencing written 2.6 years ago by ognjen011 • 190
2
votes
1
answer
1.9k
views
1
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UMI for Exome Target Sequencing
genome umi next-gen sequencing written 3.7 years ago by alessandro.pastore • 30 • updated 3.7 years ago by WouterDeCoster ♦ 42k
2
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0
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3.7k
views
0
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Tool: umitools - working with UMI incorporated data
umi tool sequencing written 5.4 years ago by Joe Brown • 70
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