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miRNA with UMI - any papers showing this improves accuracy?

umi mirna written 14 days ago by Richard • 530

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739

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Tutorial: Use fastp to preprocess FASTQ data with unique molecular identifer (UMI) integrated

umi fastq tutorial fastp written 6 months ago by chen • 1.6k

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485

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News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study

rna-seq news ngs strand ngs umi dna-seq written 7 months ago by Genomics • 70 • updated 7 months ago by WouterDeCoster ♦ 29k

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Tool: UMI-Tools 0.5, now with tools for cell barcoded scRNA-seq

umi rna-seq single cell tool written 10 months ago by i.sudbery • 2.3k

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956

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Extract consensus sequence reads (collapse PCR duplicates) from bam

umi pcr consensus sequence written 12 months ago by Nicolas Rosewick • 6.3k

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452

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Public datasets with UMI

adapters umi sequencing written 13 months ago by ognjen011 • 150

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869

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Tool: MAGERI: a software tool for calling rare variants and detecting circulating tumor DNA from UMI-tagged high-throughput sequencing data

rare variant umi resequencing ctdna tool written 13 months ago by mikhail.shugay ♦ 3.3k

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UMI for Exome Target Sequencing

genome umi next-gen sequencing written 2.2 years ago by alessandro.pastore • 30 • updated 2.2 years ago by WouterDeCoster ♦ 29k

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Tool: umitools - working with UMI incorporated data

umi tool sequencing written 3.9 years ago by Joe Brown • 70

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Recent Awards • All »

Centurion to trausch • 1.0k
Teacher to finswimmer ♦ 2.8k
Good Answer to Devon Ryan ♦ 80k
Appreciated to genomax ♦ 49k
Teacher to igor ♦ 6.2k
Teacher to biokcb • 80

Recent Replies

C: Software to calculate frequency of mutation by group by Pierre Lindenbaum ♦ 108k
If an answer was helpful you should upvote it, if the answer resolved your question you should ma...
C: Software to calculate frequency of mutation by group by williamsbrian5064 • 70
I had to do a bit more reading. They don't make it super clear about the output format. Ended up ...
C: Blast or Blat for multiple sequence alignment to get each respective sequence lo by maxime.policarpo • 20
Are you ok with using bash commands ? You should first start by installing blast on your comput...
A: Removing Illumina Single End PCR Primers and TruSeq Adapters by genomax ♦ 49k
You can also use `bbduk.sh` from [BBMap suite][1]. BBMap software includes `adapters.fa` in `reso...
A: Removing Illumina Single End PCR Primers and TruSeq Adapters by finswimmer ♦ 2.8k
Hello, trimmomatic provides an adapter file. In my system these are located under `/usr/share/tr...
C: Please suggest an appropriate genome-guided transcriptome assembler by Kevin Blighe ♦ 21k
Trinity you can of course also use, and there are other de novo transcriptome assemblers too. I w...
C: Clustering of DAVID gene enrichment results from gene expression studies by Kevin Blighe ♦ 21k
You are welcome, kind Sir!
C: KEGG pathway file for running genome music path-scan by b.nota • 3.9k
There is probably no update since 2012. KEGG FTP is not public anymore, but works with [subscript...
C: Unknown Stringtie IDs produced when using Ensembl GTF by Vijay Lakhujani ♦ 2.5k
If you are talking about the `MSTRG` IDS, you may refer to these links - [link1][1] - https://ww...
A: Best Software for analysis of Hi-C data by Devon Ryan ♦ 80k
I'll give the somewhat biased recommendation to try [HiCExplorer](https://github.com/deeptools/Hi...
C: Filtering rRNA from RNAseq data by genomax ♦ 49k
@igor: Have you seen this (https://www.biostars.org/p/318651/ )? Apologies for high-jacking this...
C: Is there any mapper to map the long/short reads against phased genome? by WouterDeCoster ♦ 29k
Please elaborate on the data you have and what you aim to obtain.

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