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Phyloseq Weighted Unifrac Ordination Error

unifrac phyloseq pcoa ordination ape written 3 months ago by mzmd4 • 0 • updated 11 weeks ago by Kevin Blighe ♦ 17k

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474

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Bacterial phylogeny download for a list of species

unifrac metagenomics tree written 11 months ago by tallnuttphone • 0

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380

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UniFrac in R with just the OTU table?

phylogeny R metagenomics unifrac written 12 months ago by David • 70

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857

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How to avoid a phylogenetic bias testing a hypothesis on a big set of bacterial genomes

genome unifrac phylogenetics bacteria written 2.1 years ago by khorms • 30 • updated 2.1 years ago by abascalfederico • 1.0k

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I posted this to another question, it is one line in [glactools][1]: glactools bplink2acf --...
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From what I can tell, the files in the directory ftp://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/anno...
C: Aligning Ion torrent sequenced genome with a reference sequence by genomax ♦ 46k
Can you post output of `head -12 your_sequence_file`?
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Can you post a couple example reads from the highly problematic sample? What sequencer were these...
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A simpler way of using a list of contigs or intervals to restrict analysis to areas of interest i...
C: Surrogate variable analysis: ask for a practical example by jonellevillar • 0
Hi Andrew, Thank you for your comments and explanations. I have limited experience using the SVA ...
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>So for this protein the numerical result from the allele analysis will be "weaker" than that ...
C: Aligning Ion torrent sequenced genome with a reference sequence by Paul • 50
@Bastein, I have updated the post now, to make it more clear, Do i need specific ion torrent mapp...
C: Aligning Ion torrent sequenced genome with a reference sequence by Bastien Hervé • 650
You didn't specify the output : > [-S ]
C: Aligning Ion torrent sequenced genome with a reference sequence by Bastien Hervé • 650
What was the output of the `bowtie2-build genome.fasta genome_index` ? Did it end successfully ? ...
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Thanks for the reply, One of the toy problems I am trying to replicate in the real world, with r...
A: Nomenclature in HGVS by mkamranazim • 0
Thanks very much for help. Kamran

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