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How to keep my data and analysis up to date across new genome releases

ncbi uniprotkb database pdb written 6.7 years ago by Sheila • 250 • updated 22 days ago by Biostar ♦♦ 20

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1.3k

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UniProtKB vs ExoCarta: which DB is better to work with?

uniprotkb database protein exocarta exosome written 3.6 years ago by barlobatobq • 0

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777

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Get number of hits programatically for a advanced query search in UniprotKb

sequence retrieval uniprotkb bioperl biopython written 3.8 years ago by sr_karmarkar • 0 • updated 3.8 years ago by Elisabeth Gasteiger • 1.9k

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1.5k

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Retrieving a list of protein names in a search result

uniprotkb written 5.2 years ago by Willem • 0 • updated 5.2 years ago by Biostar ♦♦ 20

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Go term enrichemnt

uniprotkb go written 6.7 years ago by mileti.enrichetta • 10

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Recent Replies

C: Error in converting the probsets by A • 3.9k
Sorry You are right This is the right one `GSE2457` I put CELL files from GSE2457 in rawdata d...
A: Historical Genbank genome assemblies missing? by GenoMax ♦ 95k
Archived human genome assemblies can be found at this [**NCBI FTP**][1] link. [1]: ftp://ftp....
C: Error in converting the probsets by Kevin Blighe ♦ 69k
No, GSE43700 is definitely human data, not rat. Please check the GEO record: https://www.ncbi.nlm...
A: Single cell RNA-seq anlaysis by jared.andrews07 ♦ 8.4k
To add to [rpolicastro](https://www.biostars.org/u/72027/)'s excellent answer, Bioconductor has t...
C: Error in converting the probsets by A • 3.9k
Thank you Yes this is Rat and as this is a public data this is my R object https://www.dropbox....
C: Error in converting the probsets by Kevin Blighe ♦ 69k
Thank you. You said that it is Rat?; however, the GEO record indicates that it is human. Can you ...
C: Error in converting the probsets by A • 3.9k
Thank you > featureNames(filt_eset2) [1] "1399067_at" "1388081_at" "1375569_at...
C: Error in converting the probsets by Kevin Blighe ♦ 69k
Hello again. Can you let me know what is the output of: featureNames(filt_eset2) ?
A: Post GWAS mapping SNPs to genes and calculating p-values by biotechnology415 • 0
You can use snpEff for variant annotation. Its is very easy to do it in SnpEff
A: Single cell RNA-seq anlaysis by rpolicastro ♦ 3.2k
Since this post has accumulated views, I'll add a few resources. I would consider the three most...
A: Python Documentation Tools by k • 0
One option is [Pdoc][1] which, similarly to builtin Pydoc, extracts Python docstring documentatio...
C: What does DESeq2 non symmetric MA plot mean in differential analysis?? (hi-chip) by woongjaej • 20
Oh, thanks a lot! I'll look into diffHic. Thank you very much

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