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<prev • 174 results • page 1 of 6 • next >
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News: Online training - Unix and shell scripting for bioinformatics
bioinformatics news scripting unix linux written 20 hours ago by carlopecoraro2 • 2.0k
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Help with for loop for sequence alignment using STAR
star unix written 1 day ago by Amaranta Remedios • 10
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1
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144
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1
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Doing nohup samtools sort and [ 1]+ Exit 1 is showing up
command line alignment samtools unix index written 7 weeks ago by oldtownroald • 0 • updated 7 weeks ago by aw7 • 10
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Extracting values with certain patterns by searching all columns for each line using "awk"
awk unix bash written 7 weeks ago by ClkElf • 30 • updated 7 weeks ago by Pierre Lindenbaum ♦ 133k
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134
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Using Parallel GNU
trimming parallel unix written 7 weeks ago by Ash • 10 • updated 7 weeks ago by _r_am ♦ 32k
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628
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1
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Remove part of headers in FASTA file
fasta header counter unix written 15 months ago by peterlageweg603 • 10 • updated 9 weeks ago by mergidaba • 0
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209
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5 follow
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Is there anyway to get a unix parallel command to write to standard output
unix written 10 weeks ago by curious • 470 • updated 10 weeks ago by 2nelly • 220
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183
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Splitting a semi colon value in new line and copying its neighboring cell values
python awk excel unix written 11 weeks ago by S AR • 50
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133
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rename files in a directory
unix written 12 weeks ago by storm1907 • 0 • updated 12 weeks ago by Joe ♦ 18k
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180
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BLAST search with multile fasta sequences and with a single output
genome blast sequence unix blastn written 3 months ago by endretoth • 20
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198
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find -exec with multiple command
linux samtools find command unix written 6 months ago by endretoth • 20 • updated 4 months ago by Biostar ♦♦ 20
2
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1
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145
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1
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Problems awking columns from map file
ped awk map convertf unix written 4 months ago by Nuthatch • 0 • updated 4 months ago by Bastien Hervé ♦ 4.9k
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how to speed up blastx run on slurm HPC
hpc unix bash written 4 months ago by Bioinfonext • 320 • updated 4 months ago by Mensur Dlakic • 8.4k
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Does Apple moving to Apple Silicon matters for bioinformaticians working with MACOS terminal?
software unix cpu written 4 months ago by biotech • 540 • updated 4 months ago by Alex Reynolds ♦ 31k
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Resources for learning how to submit jobs in unix-based cluster
cluster bioinformatics unix written 4 months ago by dk0319 • 20
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1
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Concatenation and Gzip Compression of Beagle Files Slow
sequencing next-gen unix bash written 5 months ago by selplat21 • 20 • updated 4 months ago by Biostar ♦♦ 20
3
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1
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170
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1
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how to change column header based on the second file column
R bash unix linux written 4 months ago by Bioinfonext • 320 • updated 4 months ago by Pierre Lindenbaum ♦ 133k
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249
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Installation of libraries as non-root user in server without internet connection
libraries mauve library unix written 5 months ago by RiccPicc • 10 • updated 5 months ago by antonioggsousa • 1.9k
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205
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Print based on character strings
R unix command line written 5 months ago by selplat21 • 20
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206
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How to get similar naming protein seqs and gff from downloaded genome files
genome bedtools gff unix written 5 months ago by T_18 • 40
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152
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1
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Making a new header depending on entries from old header
unix written 5 months ago by ellieuk • 10
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How to add column to table with awk
bed-files awk unix shell bash written 6 months ago by linelr • 10 • updated 6 months ago by Shalu Jhanwar • 480
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4
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Changing names of Fasta headers
fasta sequence sed unix bash loop written 2.9 years ago by tpaisie • 70 • updated 6 months ago by Anna • 90
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415
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1
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Merge fastq files
fastq bash merge concatenate unix written 7 months ago by BM • 70 • updated 7 months ago by Asaf ♦ 8.5k
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180
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GRAPHIC INTERFACE - Xming & PuTTY -GUI
xming graphic interface putty unix written 7 months ago by GiuliaAC • 10
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7 follow
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Rearranging order of descriptors in fasta file header
fasta unix dna written 3.7 years ago by m.rhodes • 40 • updated 7 months ago by JMMM • 10
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Changing gene headers in .sqn file for genome upload NCBI
ncbi .sqn unix written 7 months ago by T_18 • 40
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201
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Compare pairs of key/value of perl hash tables in thre input files
hash table perl protein domain unix hashes written 7 months ago by aiswaryabioinfo • 20 • updated 7 months ago by JC ♦ 12k
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unix, awk or sed question on splitting lines
sed unix awk written 7 months ago by geneart$$ • 40 • updated 7 months ago by GenoMax ♦ 95k
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Extract protein sequences or names based on GFF and protein file
gff unix written 8 months ago by T_18 • 40
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