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13
votes
1
answer
142
views
5 follow
1
answer
Cannot execute command-line STRUCTURE software on a Linux machine
software error linux structure unix written 22 days ago by endretoth • 20
1
vote
2
answers
3.6k
views
2
answers
Search And Replace Old Seq-Id With New Seq-Id Across Fasta Files Using A List.Txt Of Both Ids?
bioinformatics unix written 6.1 years ago by hosseinv • 20 • updated 5 weeks ago by Biostar ♦♦ 20
2
votes
0
answers
112
views
0
answers
Filtering multiple single person structural variant VCF files by type of SV
vcf structural variation bcftools unix linux written 6 weeks ago by omid.alavijeh • 20
14
votes
5
answers
966
views
7 follow
5
answers
Removing N's from NextSeq reads
sequence unix rna-seq cel-seq written 16 months ago by exin • 50 • updated 7 weeks ago by Biostar ♦♦ 20
33
votes
5
answers
18k
views
28 follow
5
answers
Filtering Fastq Sequences Based On Lengths
perl unix awk written 6.7 years ago by empyrean999 • 160 • updated 8 weeks ago by komjinhubuio • 10
6
votes
1
answer
120
views
1
answer
Remove part of headers in FASTA file
fasta header counter unix written 9 weeks ago by peterlageweg603 • 10 • updated 9 weeks ago by Macspider • 3.0k
0
votes
0
answers
178
views
0
answers
News: Programming with Bash and Python
python news programming unix bash written 3 months ago by carlopecoraro2 • 1.3k
3
votes
1
answer
2.1k
views
1
answer
Modifying fasta header
perl python sed unix awk written 5.4 years ago by empyrean999 • 160 • updated 3 months ago by RamRS ♦ 25k
1
vote
2
answers
1.4k
views
2
answers
how to get information for a series of accession ID ?
R linux unix python written 4.7 years ago by Mo • 900 • updated 3 months ago by taserope • 0
2
votes
0
answers
136
views
0
answers
News: Bioinformatic courses in Canada (Quebec City) this September
gwas genomics python news R unix written 4 months ago by carlopecoraro2 • 1.3k
4
votes
2
answers
181
views
2
answers
Difference between samtools cat and the unix command cat?
samtools unix written 4 months ago by yh362 • 30 • updated 4 months ago by benformatics • 1.2k
1
vote
1
answer
172
views
1
answer
Removing SNPs with the count allele in 5 (insertion), 6 (deletion) or 7(allele from a reference panel)
gwas imputation plink snp unix written 4 months ago by jongyun.jung • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 124k
0
votes
0
answers
190
views
0
answers
News: Do you want to improve your programming skills?
python news bash unix programming written 5 months ago by carlopecoraro2 • 1.3k
2
votes
1
answer
286
views
1
answer
How to append two fasta files?
fasta bioinformatics unix python written 6 months ago by Dineshkumar K • 30 • updated 6 months ago by Corentin • 430
2
votes
2
answers
773
views
2
answers
Extract gene lists using two files
shell script unix awk written 2.2 years ago by bk11 • 40 • updated 6 months ago by Biostar ♦♦ 20
3
votes
1
answer
211
views
1
answer
Split file not working
unix split file written 6 months ago by jaqx008 • 60 • updated 6 months ago by zx8754 ♦ 8.8k
1
vote
0
answers
358
views
0
answers
Job: Bioinformatics Analyst - Q2 Lab Solutions
perl python linux unix job written 7 months ago by Dontae • 10
1
vote
1
answer
1.8k
views
1
answer
grep command on VCF
vcf grep bcf unix written 7 months ago by jon.klonowski • 40
2
votes
2
answers
1.8k
views
2
answers
Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 4.1 years ago by crawlthrutacos • 0 • updated 7 months ago by Biostar ♦♦ 20
1
vote
0
answers
292
views
0
answers
Extract several parts from fasta header
fasta grep sed unix bash written 9 months ago by rah • 20
0
votes
0
answers
286
views
0
answers
Bash: selecting directory and fasta files from assembly
assembly .fasta unix bash written 9 months ago by rah • 20
1
vote
2
answers
277
views
2
answers
Advice on Blast output
format unix blast written 10 months ago by stacy734 • 40
5
votes
1
answer
348
views
5 follow
1
answer
Loop over .sai files coupled with .fastq.gz
chip-seq unix written 10 months ago by Bnf83 • 130 • updated 10 months ago by arup • 1.9k
0
votes
2
answers
1.6k
views
2
answers
Giving options to Command line Clustalw
clustalw unix written 2.3 years ago by Jacob • 10 • updated 11 months ago by Mirko • 10
5
votes
1
answer
2.4k
views
1
answer
How to load data into R from an external hard drive?
R load unix rstudio written 12 months ago by M.O.L.S • 10 • updated 11 months ago by zx8754 ♦ 8.8k
2
votes
1
answer
455
views
6 follow
1
answer
Getting unusual characters while generating output files in a bash script
sh bash unix linux written 12 months ago by S AR • 50
0
votes
1
answer
326
views
1
answer
Splitting each row of a correlation matrix into individual files
gene unix split commands written 12 months ago by priyankaraina10 • 10 • updated 12 months ago by finswimmer ♦ 13k
0
votes
1
answer
947
views
1
answer
How to identify which SNPs in my dataset are genome wide significant
R unix manhattan plot written 13 months ago by sean.oscineir2 • 0 • updated 12 months ago by Johan Zicola • 60
3
votes
1
answer
383
views
1
answer
Replace between character and white space using unix sed
replace sed unix written 14 months ago by dllopezr • 40 • updated 14 months ago by Kevin Blighe ♦ 52k
12
votes
1
answer
423
views
1
answer
Add text in somewhere middle of line using information from the same line in file.
sed unix awk written 14 months ago by bk11 • 40 • updated 14 months ago by Joe ♦ 15k
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