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Subset reads from RNAseq .bam file
unix rna-seq written 20 days ago by fabio.demartino2 • 0
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73
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Buffer Overflow with GSNAP
alignment unix rna-seq written 23 days ago by noahaus • 10 • updated 23 days ago by genomax ♦ 54k
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5
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199
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7 follow
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Removing N's from NextSeq reads
sequence unix rna-seq cel-seq written 25 days ago by exin • 0 • updated 25 days ago by cpad0112 • 8.3k
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223
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8 follow
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No alignment, only header in sam file
samtools unix rna-seq written 5 weeks ago by ss • 0 • updated 5 weeks ago by ATpoint ♦ 6.5k
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365
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Job: Computer scientist or bioinformatician to join the bioinformatics unit of the European Institute of Oncology (IEO - Milan)
hpc ngs unix web job written 6 weeks ago by Arnaud Ceol • 830
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139
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Obtain sequences that did not appear in your fasta file
genome perl ngs unix bash written 7 weeks ago by sicat.paolo20 • 20 • updated 7 weeks ago by Pierre Lindenbaum ♦ 111k
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7 follow
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A Question On Doing Substitution By Using Bash
unix sam written 7.0 years ago by Yunfei Li • 280 • updated 10 weeks ago by Biostar ♦♦ 20
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208
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Convert genotype probabilities (0-1) into genotypes (0,1,2)
R unix snp written 10 weeks ago by lakemonster • 0 • updated 10 weeks ago by zx8754 ♦ 4.8k
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3
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515
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Changing names of Fasta headers
fasta sequence sed unix bash loop written 5 months ago by tpaisie • 70 • updated 11 weeks ago by h.mon ♦ 18k
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137
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samtools merge iterate through multiple chromosomes and generates pairs
genome samtools unix whole genome sequencing written 3 months ago by s1661753 • 0 • updated 3 months ago by Ram ♦ 17k
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1
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174
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Adjust ulimit open file handle limit on Mac OS X Sierra for GATK
gatk gatk3 macosx unix ulimit written 3 months ago by gaelgarcia05 • 180 • updated 3 months ago by Alex Reynolds ♦ 25k
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Job: Postdoctoral Fellow (Genome Assembly)
java job c/c++ perl unix linux written 3 months ago by Recruit • 220
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175
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1
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Removing illegal Characters from an Alignment file for RaxML
python unix written 4 months ago by apulunuj • 0 • updated 4 months ago by Alex Reynolds ♦ 25k
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152
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News: RAD-seq data analysis course in Berlin
rad-seq bioinformatics news stacks unix written 4 months ago by carlopecoraro2 • 710
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366
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5 follow
2
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Replacing nth character in all lines help
bioinformatics sequence unix linux python written 4 months ago by austinjyoder • 0 • updated 4 months ago by cpad0112 • 8.3k
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243
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5 follow
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Extracting counts of reads into a matrix
reads grep counts unix written 4 months ago by rmash • 0 • updated 4 months ago by cpad0112 • 8.3k
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5 follow
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Trim Sequences And Quality In Fastq File
unix written 4.5 years ago by abn4 • 10 • updated 6 months ago by Ram ♦ 17k
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News: Course: Introduction to Unix for biologists. 12-16 March 2018 in Berlin
gene news next-gen unix written 6 months ago by carlopecoraro2 • 710
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1
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399
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6 follow
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Naive BASH question on top to bottom programming regarding my alignment script
unix bash written 6 months ago by datascientist28 • 350
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524
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Using 'blastn' to do a remote search on NCBI BLAST against the nt collection database
unix blast shell linux written 6 months ago by maciwuk • 0
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1
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516
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1
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RepeatMasker error - BEGIN failed--compilation aborted at /usr/local/RepeatMasker/Taxonomy.pm line 83.
installation transposons unix repeatmasker soundex written 6 months ago by danielke • 10
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249
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bash loop to align 366 RNAseq samples in individual folders
bash alignment star rna-seq unix written 7 months ago by DataFanatic • 100
2
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584
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diFST with awk - subtract and divide column value by their average and stdev
z-score average awk unix standard deviation written 10 months ago by pedroamandrade • 40 • updated 7 months ago by Biostar ♦♦ 20
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372
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5 follow
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News: A new Stack Exchange site for Research Computing
news linux unix programming written 8 months ago by tiagoantao • 660 • updated 8 months ago by genomax ♦ 54k
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1
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446
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1
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IHMP downloads - how?
software error hmp unix bioinformatics aspera written 9 months ago by Xylanaser • 10
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406
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1
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Batch Download websites from php database
unix php written 10 months ago by rororo • 0 • updated 10 months ago by LLTommy • 1.2k
2
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2
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445
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2
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Extract gene lists using two files
shell script unix awk written 10 months ago by bhuwankhatri11 • 20
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1
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1.2k
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1
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Mosaik Aligner Error
ngs alignment 454 unix mosaik written 3.2 years ago by JW • 10 • updated 11 months ago by Biostar ♦♦ 20
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1
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515
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1
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how to print a specific column condition in multiple files
unix text-processing written 11 months ago by Ana • 100 • updated 11 months ago by Kevin Blighe ♦ 26k
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1
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594
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1
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Giving options to Command line Clustalw
clustalw unix written 12 months ago by Jacob • 10
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