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Could I delete the unzipped installation folder after building a package?
build unix linux written 5 hours ago by johnnytam100 • 40 • updated 3 hours ago by Medhat ♦ 7.9k
3
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1
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108
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1
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Replace between character and white space using unix sed
replace sed unix written 3 days ago by dllopezr • 30 • updated 3 days ago by Kevin Blighe ♦ 30k
11
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1
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131
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1
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Add text in somewhere middle of line using information from the same line in file.
sed unix awk written 3 days ago by bhuwankhatri11 • 30 • updated 3 days ago by jrj.healey ♦ 7.7k
15
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1
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163
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Debugging a sed script to extract values from rows in .txt file
sed unix regex written 8 days ago by kristina.mahan • 20
1
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90
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where to keep scripts for new software
$path install unix written 17 days ago by DataFanatic • 110
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2
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98
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Calculating average using information from three different columns of a file.
R unix python written 19 days ago by bhuwankhatri11 • 30 • updated 18 days ago by zx8754 ♦ 5.4k
6
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151
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5 follow
1
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Finding out if certain SNP positions fall into certain gene regions
gene region snps unix R written 21 days ago by SGMS • 40 • updated 21 days ago by Alex Reynolds ♦ 26k
6
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5
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266
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5 follow
5
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Extract start coordinate from read 1 and end coordinate from read 2 of paired end reads.
bedtools unix written 7 weeks ago by rjobmc • 0 • updated 7 weeks ago by finswimmer ♦ 6.2k
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152
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Subset reads from RNAseq .bam file
unix rna-seq written 11 weeks ago by fabio.demartino2 • 0
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117
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Buffer Overflow with GSNAP
alignment unix rna-seq written 12 weeks ago by noahaus • 10 • updated 12 weeks ago by genomax ♦ 57k
14
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5
answers
300
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7 follow
5
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Removing N's from NextSeq reads
sequence unix rna-seq cel-seq written 12 weeks ago by exin • 30 • updated 12 weeks ago by cpad0112 • 9.3k
13
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1
answer
264
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8 follow
1
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No alignment, only header in sam file
samtools unix rna-seq written 3 months ago by ss • 0 • updated 3 months ago by ATpoint ♦ 8.0k
1
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Job: Computer scientist or bioinformatician to join the bioinformatics unit of the European Institute of Oncology (IEO - Milan)
hpc ngs unix web job written 3 months ago by Arnaud Ceol • 830
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2
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204
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Obtain sequences that did not appear in your fasta file
genome perl ngs unix bash written 3 months ago by sicat.paolo20 • 20 • updated 3 months ago by Pierre Lindenbaum ♦ 113k
15
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2
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7 follow
2
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A Question On Doing Substitution By Using Bash
unix sam written 7.2 years ago by Yunfei Li • 280 • updated 4 months ago by Biostar ♦♦ 20
2
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2
answers
294
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2
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Convert genotype probabilities (0-1) into genotypes (0,1,2)
R unix snp written 4 months ago by lakemonster • 0 • updated 4 months ago by zx8754 ♦ 5.4k
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3
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3
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Changing names of Fasta headers
fasta sequence sed unix bash loop written 7 months ago by tpaisie • 70 • updated 4 months ago by h.mon ♦ 20k
2
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0
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189
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samtools merge iterate through multiple chromosomes and generates pairs
genome samtools unix whole genome sequencing written 5 months ago by s1661753 • 0 • updated 5 months ago by RamRS ♦ 18k
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1
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315
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1
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Adjust ulimit open file handle limit on Mac OS X Sierra for GATK
gatk gatk3 macosx unix ulimit written 5 months ago by gaelgarcia05 • 180 • updated 5 months ago by Alex Reynolds ♦ 26k
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243
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Job: Postdoctoral Fellow (Genome Assembly)
java job c/c++ perl unix linux written 5 months ago by Recruit • 220
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1
answer
231
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1
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Removing illegal Characters from an Alignment file for RaxML
python unix written 6 months ago by apulunuj • 0 • updated 6 months ago by Alex Reynolds ♦ 26k
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200
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News: RAD-seq data analysis course in Berlin
rad-seq bioinformatics news stacks unix written 6 months ago by carlopecoraro2 • 760
1
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2
answers
434
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5 follow
2
answers
Replacing nth character in all lines help
bioinformatics sequence unix linux python written 6 months ago by austinjyoder • 0 • updated 6 months ago by cpad0112 • 9.3k
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2
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286
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5 follow
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Extracting counts of reads into a matrix
reads grep counts unix written 6 months ago by rmash • 0 • updated 6 months ago by cpad0112 • 9.3k
2
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3
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2.5k
views
5 follow
3
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Trim Sequences And Quality In Fastq File
unix written 4.7 years ago by abn4 • 10 • updated 8 months ago by RamRS ♦ 18k
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249
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News: Course: Introduction to Unix for biologists. 12-16 March 2018 in Berlin
gene news next-gen unix written 8 months ago by carlopecoraro2 • 760
4
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1
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460
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6 follow
1
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Naive BASH question on top to bottom programming regarding my alignment script
unix bash written 8 months ago by datascientist28 • 350
3
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772
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Using 'blastn' to do a remote search on NCBI BLAST against the nt collection database
unix blast shell linux written 8 months ago by maciwuk • 0
3
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1
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646
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1
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RepeatMasker error - BEGIN failed--compilation aborted at /usr/local/RepeatMasker/Taxonomy.pm line 83.
installation transposons unix repeatmasker soundex written 8 months ago by danielke • 10
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317
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bash loop to align 366 RNAseq samples in individual folders
bash alignment star rna-seq unix written 9 months ago by DataFanatic • 110
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