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2
votes
1
answer
120
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6 follow
1
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Getting unusual characters while generating output files in a bash script
sh bash unix linux written 4 days ago by S AR • 50
0
votes
1
answer
119
views
1
answer
Splitting each row of a correlation matrix into individual files
gene unix split commands written 16 days ago by priyankaraina10 • 10 • updated 16 days ago by finswimmer ♦ 8.0k
0
votes
1
answer
176
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1
answer
How to identify which SNPs in my dataset are genome wide significant
R unix manhattan plot written 4 weeks ago by sean.oscineir2 • 0 • updated 25 days ago by Johan Zicola • 30
3
votes
1
answer
168
views
1
answer
Replace between character and white space using unix sed
replace sed unix written 8 weeks ago by dllopezr • 40 • updated 8 weeks ago by Kevin Blighe ♦ 33k
12
votes
1
answer
245
views
1
answer
Add text in somewhere middle of line using information from the same line in file.
sed unix awk written 8 weeks ago by bk11 • 30 • updated 8 weeks ago by jrj.healey ♦ 9.1k
15
votes
1
answer
231
views
1
answer
Debugging a sed script to extract values from rows in .txt file
sed unix regex written 9 weeks ago by kristina.mahan • 20
1
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0
answers
125
views
0
answers
where to keep scripts for new software
$path install unix written 10 weeks ago by DataFanatic • 110
1
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2
answers
137
views
2
answers
Calculating average using information from three different columns of a file.
R unix python written 10 weeks ago by bk11 • 30 • updated 10 weeks ago by zx8754 ♦ 6.1k
6
votes
1
answer
219
views
5 follow
1
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Finding out if certain SNP positions fall into certain gene regions
gene region snps unix R written 11 weeks ago by SGMS • 50 • updated 11 weeks ago by Alex Reynolds ♦ 26k
6
votes
5
answers
366
views
5 follow
5
answers
Extract start coordinate from read 1 and end coordinate from read 2 of paired end reads.
bedtools unix written 3 months ago by rjobmc • 0 • updated 3 months ago by finswimmer ♦ 8.0k
1
vote
0
answers
203
views
0
answers
Subset reads from RNAseq .bam file
unix rna-seq written 4 months ago by fabio.demartino2 • 0
0
votes
0
answers
144
views
0
answers
Buffer Overflow with GSNAP
alignment unix rna-seq written 4 months ago by noahaus • 10 • updated 4 months ago by genomax ♦ 59k
14
votes
5
answers
377
views
7 follow
5
answers
Removing N's from NextSeq reads
sequence unix rna-seq cel-seq written 4 months ago by exin • 30 • updated 4 months ago by cpad0112 • 10k
13
votes
1
answer
298
views
8 follow
1
answer
No alignment, only header in sam file
samtools unix rna-seq written 5 months ago by ss • 0 • updated 5 months ago by ATpoint ♦ 11k
1
vote
0
answers
531
views
0
answers
Job: Computer scientist or bioinformatician to join the bioinformatics unit of the European Institute of Oncology (IEO - Milan)
hpc ngs unix web job written 5 months ago by Arnaud Ceol • 830
9
votes
2
answers
241
views
2
answers
Obtain sequences that did not appear in your fasta file
genome perl ngs unix bash written 5 months ago by sicat.paolo20 • 20 • updated 5 months ago by Pierre Lindenbaum ♦ 115k
15
votes
2
answers
1.2k
views
7 follow
2
answers
A Question On Doing Substitution By Using Bash
unix sam written 7.3 years ago by Yunfei Li • 280 • updated 6 months ago by Biostar ♦♦ 20
2
votes
2
answers
365
views
2
answers
Convert genotype probabilities (0-1) into genotypes (0,1,2)
R unix snp written 6 months ago by lakemonster • 0 • updated 6 months ago by zx8754 ♦ 6.1k
0
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3
answers
1.0k
views
3
answers
Changing names of Fasta headers
fasta sequence sed unix bash loop written 9 months ago by tpaisie • 70 • updated 6 months ago by h.mon ♦ 21k
2
votes
0
answers
229
views
0
answers
samtools merge iterate through multiple chromosomes and generates pairs
genome samtools unix whole genome sequencing written 7 months ago by s1661753 • 0 • updated 7 months ago by RamRS ♦ 19k
0
votes
1
answer
467
views
1
answer
Adjust ulimit open file handle limit on Mac OS X Sierra for GATK
gatk gatk3 macosx unix ulimit written 7 months ago by gaelgarcia05 • 180 • updated 7 months ago by Alex Reynolds ♦ 26k
0
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0
answers
269
views
0
answers
Job: Postdoctoral Fellow (Genome Assembly)
java job c/c++ perl unix linux written 7 months ago by Recruit • 220
1
vote
1
answer
287
views
1
answer
Removing illegal Characters from an Alignment file for RaxML
python unix written 8 months ago by apulunuj • 0 • updated 8 months ago by Alex Reynolds ♦ 26k
0
votes
0
answers
249
views
0
answers
News: RAD-seq data analysis course in Berlin
rad-seq bioinformatics news stacks unix written 8 months ago by carlopecoraro2 • 780
1
vote
2
answers
491
views
5 follow
2
answers
Replacing nth character in all lines help
bioinformatics sequence unix linux python written 8 months ago by austinjyoder • 0 • updated 8 months ago by cpad0112 • 10k
0
votes
2
answers
316
views
5 follow
2
answers
Extracting counts of reads into a matrix
reads grep counts unix written 8 months ago by rmash • 0 • updated 8 months ago by cpad0112 • 10k
2
votes
3
answers
2.6k
views
5 follow
3
answers
Trim Sequences And Quality In Fastq File
unix written 4.9 years ago by abn4 • 10 • updated 10 months ago by RamRS ♦ 19k
0
votes
0
answers
292
views
0
answers
News: Course: Introduction to Unix for biologists. 12-16 March 2018 in Berlin
gene news next-gen unix written 10 months ago by carlopecoraro2 • 780
4
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1
answer
513
views
6 follow
1
answer
Naive BASH question on top to bottom programming regarding my alignment script
unix bash written 10 months ago by datascientist28 • 350
3
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0
answers
1.0k
views
0
answers
Using 'blastn' to do a remote search on NCBI BLAST against the nt collection database
unix blast shell linux written 10 months ago by maciwuk • 0
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