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<prev • 116 results • page 1 of 4 • next >
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Advice on Blast output
format unix blast written 3 days ago by stacy734 • 30
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1
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123
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5 follow
1
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Loop over .sai files coupled with .fastq.gz
chip-seq unix written 24 days ago by Bnf83 • 130 • updated 24 days ago by arup • 820
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2
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Giving options to Command line Clustalw
clustalw unix written 18 months ago by Jacob • 10 • updated 4 weeks ago by Mirko • 0
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1
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288
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How to load data into R from an external hard drive?
R load unix rstudio written 8 weeks ago by M.O.L.S • 0 • updated 8 weeks ago by zx8754 ♦ 6.5k
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186
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6 follow
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Getting unusual characters while generating output files in a bash script
sh bash unix linux written 9 weeks ago by S AR • 50
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1
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177
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1
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Splitting each row of a correlation matrix into individual files
gene unix split commands written 11 weeks ago by priyankaraina10 • 10 • updated 11 weeks ago by finswimmer ♦ 9.8k
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278
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How to identify which SNPs in my dataset are genome wide significant
R unix manhattan plot written 3 months ago by sean.oscineir2 • 0 • updated 12 weeks ago by Johan Zicola • 40
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1
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216
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1
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Replace between character and white space using unix sed
replace sed unix written 4 months ago by dllopezr • 40 • updated 4 months ago by Kevin Blighe ♦ 37k
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1
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282
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1
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Add text in somewhere middle of line using information from the same line in file.
sed unix awk written 4 months ago by bk11 • 30 • updated 4 months ago by jrj.healey ♦ 10k
15
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1
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281
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1
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Debugging a sed script to extract values from rows in .txt file
sed unix regex written 4 months ago by kristina.mahan • 30
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153
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where to keep scripts for new software
$path install unix written 4 months ago by DataFanatic • 120
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165
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Calculating average using information from three different columns of a file.
R unix python written 4 months ago by bk11 • 30 • updated 4 months ago by zx8754 ♦ 6.5k
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297
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5 follow
1
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Finding out if certain SNP positions fall into certain gene regions
gene region snps unix R written 4 months ago by SGMS • 50 • updated 4 months ago by Alex Reynolds ♦ 27k
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5
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428
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5 follow
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Extract start coordinate from read 1 and end coordinate from read 2 of paired end reads.
bedtools unix written 5 months ago by rjobmc • 0 • updated 5 months ago by finswimmer ♦ 9.8k
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242
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Subset reads from RNAseq .bam file
unix rna-seq written 6 months ago by fabio.demartino2 • 0
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174
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Buffer Overflow with GSNAP
alignment unix rna-seq written 6 months ago by noahaus • 10 • updated 6 months ago by genomax ♦ 62k
14
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5
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449
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7 follow
5
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Removing N's from NextSeq reads
sequence unix rna-seq cel-seq written 6 months ago by exin • 50 • updated 6 months ago by cpad0112 ♦ 11k
13
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1
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330
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8 follow
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No alignment, only header in sam file
samtools unix rna-seq written 7 months ago by ss • 0 • updated 7 months ago by ATpoint ♦ 13k
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596
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Job: Computer scientist or bioinformatician to join the bioinformatics unit of the European Institute of Oncology (IEO - Milan)
hpc ngs unix web job written 7 months ago by Arnaud Ceol • 840
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278
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Obtain sequences that did not appear in your fasta file
genome perl ngs unix bash written 7 months ago by sicat.paolo20 • 30 • updated 7 months ago by Pierre Lindenbaum ♦ 116k
15
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7 follow
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A Question On Doing Substitution By Using Bash
unix sam written 7.5 years ago by Yunfei Li • 280 • updated 8 months ago by Biostar ♦♦ 20
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434
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Convert genotype probabilities (0-1) into genotypes (0,1,2)
R unix snp written 8 months ago by lakemonster • 0 • updated 8 months ago by zx8754 ♦ 6.5k
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3
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1.3k
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Changing names of Fasta headers
fasta sequence sed unix bash loop written 11 months ago by tpaisie • 70 • updated 8 months ago by h.mon ♦ 23k
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266
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samtools merge iterate through multiple chromosomes and generates pairs
genome samtools unix whole genome sequencing written 9 months ago by s1661753 • 0 • updated 9 months ago by RamRS ♦ 20k
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644
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Adjust ulimit open file handle limit on Mac OS X Sierra for GATK
gatk gatk3 macosx unix ulimit written 9 months ago by gaelgarcia05 • 180 • updated 9 months ago by Alex Reynolds ♦ 27k
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Job: Postdoctoral Fellow (Genome Assembly)
java job c/c++ perl unix linux written 9 months ago by Recruit • 220
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370
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1
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Removing illegal Characters from an Alignment file for RaxML
python unix written 10 months ago by apulunuj • 0 • updated 10 months ago by Alex Reynolds ♦ 27k
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292
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News: RAD-seq data analysis course in Berlin
rad-seq bioinformatics news stacks unix written 10 months ago by carlopecoraro2 • 840
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542
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5 follow
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Replacing nth character in all lines help
bioinformatics sequence unix linux python written 10 months ago by austinjyoder • 0 • updated 10 months ago by cpad0112 ♦ 11k
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358
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5 follow
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Extracting counts of reads into a matrix
reads grep counts unix written 10 months ago by rmash • 0 • updated 10 months ago by cpad0112 ♦ 11k
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