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Collecting 3' UTR and neighboring exonic sequence from GENCODE GTF files
gtf utr gencode written 4.0 years ago by mdwain.uw0 • updated 2 days ago by Biostar ♦♦ 20
3
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145
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1
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Downloading 3' UTR sequences for miRNA Target Prediction
genome assembly sequence utr rna-seq written 7 weeks ago by yronimuz0 • updated 7 weeks ago by i.sudbery7.3k
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206
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5 follow
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128
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3
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GENCODE and untranslated regions
utr gencode written 3 months ago by j.lunger1810 • updated 3 months ago by Emily_Ensembl20k
2
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1
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167
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1
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3' UTRs GTF file
gtf utr mir expression written 4 months ago by Triple Nipple0 • updated 4 months ago by Asaf7.3k
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5 follow
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Remove overlap between Exon and UTR boundaries
exon utr rna-seq written 6 months ago by waqaskhokhar99980 • updated 6 months ago by JC9.7k
3
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239
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1
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Mapping aligned reads to UTRs
cds alignment utr rna-seq written 9 months ago by jpcchoy0 • updated 9 months ago by Ace70
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244
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2
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259
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Bulk Download all CDS and UTRs of known genes from ENSEMBL
cds utr ensembl written 10 months ago by Aishwarya Kulkarni70 • updated 10 months ago by ATpoint31k
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309
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1
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1
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Find the 3' utrs, 5'utrs and their counts from bam files
bedtools bed bam utr ucsc written 14 months ago by ilovesuperheroes19930 • updated 14 months ago by Gautier Richard280
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6 follow
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Multiple Sequence Alignment Of 3' Utr
alignment utr multiple written 10.0 years ago by Ria20 • updated 19 months ago by RamRS26k
2
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1
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1
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Recommended Tools For 3'UTR APA Detection From Rna-Seq Data?
R tools utr rna-seq polyadenylation written 2.6 years ago by gandrescabrera80 • updated 2.6 years ago by i.sudbery7.3k
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1.2k
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2
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Get one maximum UTR per gene
biomart 3' utr utr ucsc written 2.7 years ago by max0 • updated 2.7 years ago by Alex Reynolds29k
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Bacterial UTR Analysis tools
utr promoter transcription written 3.1 years ago by Joe16k
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11
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Finding UTR regions in the RNA sequencing data from a non-model organism
non-model organism utr rna-seq written 3.5 years ago by seta1.2k • updated 3.5 years ago by EVR570
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1
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infer 3' and 5' UTR from gff3 file
genome gff3 next-gen utr written 3.7 years ago by Chris30 • updated 3.6 years ago by Daniel Standage3.9k
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16 follow
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Easy Way To Get 3' Utr Lengths Of A List Of Genes
utr written 9.2 years ago by Paul750 • updated 3.7 years ago by marcosmorgan100
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9 follow
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How To Get The 3' Utr Given Geneid And Transcriptid In Ensembl Using Python?
ensembl biomart utr api written 9.0 years ago by Sam70 • updated 4.1 years ago by alex.rubinsteyn130
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Is there any way to extract longest ORF from blastx output?
sequence cds alignment utr blast written 4.6 years ago by sohra40 • updated 4.5 years ago by 5heikki8.7k
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Finding coding and UTR regions for a gene list
alignment coding utr sequencing written 4.6 years ago by seta1.2k • updated 4.6 years ago by Pierre Lindenbaum127k
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How to get distingushable CDS and UTR sequences of gene from biomart?
biomart sequence coding utr written 4.6 years ago by sohra40 • updated 4.6 years ago by Devon Ryan94k
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1
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UTR visualization of CLIP seq data
visulaization utr browser written 4.9 years ago by kanwarjag1.0k • updated 4.8 years ago by Sukhdeep Singh10.0k
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biomaRt: Extracting data for a particular isoform (R/bioconductor)
biomart utr extract bioconductor written 4.9 years ago by bsmith030465150 • updated 4.8 years ago by Biostar ♦♦ 20
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