variance filtering Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answer

264

views

answer

Filtering low variance genes for WGCNA

genefilter variance filtering iqr wgcna written 10 weeks ago by pennakiza • 60 • updated 10 weeks ago by Kevin Blighe ♦ 71k

Recent Votes

Recent Locations • All »

Bloomington, IN, just now
London, 2 minutes ago

Recent Awards • All »

Teacher to Michael Dondrup ♦ 48k
Teacher to GenoMax ♦ 96k
Scholar to GenoMax ♦ 96k
Teacher to Barry Digby • 680
Scholar to Barry Digby • 680
Supporter to greyman • 110

Recent Replies

C: segmentation fault in Bayenv2 by Diesel • 0
Have you found a solution by any chance?
C: segmentation fault in Bayenv2 by Diesel • 0
This is NOT the solution.
A: To retrive all sequences by GenoMax ♦ 96k
Answers here: https://www.biostars.org/p/468971/
C: Covariate correction which data take for downstream analysis? by camillab. • 40
thank you for your the wake-up call (if you can do it with my boss as wells tit would be great ma...
A: Command line Taxa search within SRA / NCBI Trace by vkkodali • 2.4k
These data are generated by a tool called STAT. You can download it here: https://github.com/ncbi...
C: how to annotate Circular RNA gene type? by Barry Digby • 680
use CIRIquant , you can provide the outputs from CIRI2.
C: Getting Uniprot accession number by GenoMax ♦ 96k
My comment was showing OP what selections they needed to use with `bioDBnet` to get expected output.
A: Covariate correction which data take for downstream analysis? by ATpoint ♦ 46k
The list of posts on the same underlying problem gets longer and longer, why don't you simply use...
C: Covariate correction which data take for downstream analysis? by camillab. • 40
> Also, 6 patients are very few to estimate an age- or sex-related > effect Despite I am n...
A: Covariate correction which data take for downstream analysis? by Martombo • 2.7k
You should add your variable of interest in your linear model: model <- lm(Gene ~ age + s...
C: How do I install Boost and the bjam build engine for Cufflinks by Martombo • 2.7k
I would stress the last point. Don't use cufflinks in 2021.
C: low assignment reads % in RNA-seq by parinv • 30
I figured out using **GTF.featureType="exon"** is giving low assignment %, If I use **GTF.feature...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 2127 users visited in the last hour