Showing: variant callingreset
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Variant calling by using samtools and bcftools
variant calling samtools bcftools written 4 days ago by hasani.iut640 • updated 3 days ago by ATpoint12k
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some good practices doubts
gene variant calling alignment written 14 months ago by prasundutta87300 • updated 13 days ago by Biostar ♦♦ 20
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VCF file manipulation for extracting the required information
variant calling vcf genome sequencing written 8 months ago by seta1.1k • updated 4 weeks ago by zx87546.2k
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Consensus VCF file from several variant callers
vcf variant calling freebayes gatk written 4 weeks ago by ajuiwl30 • updated 4 weeks ago by Pierre Lindenbaum116k
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Merging population vcf files without gvcf
variant calling genome next-gen written 5 weeks ago by Myo Naung 10 • updated 5 weeks ago by WouterDeCoster35k
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Somatic variant caller
variant calling somatic next-gen written 22 months ago by CY270 • updated 5 weeks ago by Biostar ♦♦ 20
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Warning in GATK Picard MarkDuplicates
variant calling gatk picard markduplicates written 5 weeks ago by Mehulsharma.25310 • updated 5 weeks ago by Pierre Lindenbaum116k
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4/6 genotype in VCF
vcf variant calling genotype written 3 months ago by ajuiwl30 • updated 3 months ago by Pierre Lindenbaum116k
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Hard filtering results of vcf file for multiple samps
variant calling gatk hard filtering written 5 months ago by seta1.1k • updated 5 months ago by finswimmer8.9k
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Extracting Variants from large set of variants
variant calling vcf wgs data written 5 months ago by bioinfo3550 • updated 5 months ago by ammar.husami0
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Find variants supported by at least 20 reads freebayes
variant calling freebayes written 7 months ago by kspata40 • updated 7 months ago by finswimmer8.9k
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How do variant callers get genotype info?
variant calling indel snp phasing written 7 months ago by afzm20 • updated 7 months ago by Jeremy Leipzig18k
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