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<prev • 176 results • page 1 of 6 • next >
6
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3
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456
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5 follow
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What is the advantage of variant calling using RNA-seq technique?
variant calling galaxy rna-seq written 3 months ago by akilabioinfo • 0 • updated 14 hours ago by RamRS ♦ 17k
4
votes
0
answers
247
views
0
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Help with Sanger Imputation Service
variant calling imputation rna-seq written 18 days ago by sandKings • 10
1
vote
1
answer
139
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1
answer
Sanger Imputation Service - The input file sanity check failed : faidx_fetch_seq failed at JH636052.4:4111085
rnaseq variant calling written 21 days ago by sandKings • 10
1
vote
1
answer
184
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1
answer
Hard filtering results of vcf file for multiple samps
variant calling gatk hard filtering written 6 weeks ago by seta • 1.0k • updated 6 weeks ago by finswimmer ♦ 5.4k
1
vote
1
answer
159
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1
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Applying BQSR before running GATK's HaplotypeCaller on whole-genome sequencing data
variant calling haplotypecaller written 8 weeks ago by seta • 1.0k • updated 7 weeks ago by finswimmer ♦ 5.4k
0
votes
2
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140
views
2
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Extracting Variants from large set of variants
variant calling vcf wgs data written 8 weeks ago by bioinfo355 • 0 • updated 8 weeks ago by ammar.husami • 0
3
votes
1
answer
164
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1
answer
variant calling after reference genome is updated
variant calling wgs snp written 10 weeks ago by prasundutta87 • 200
14
votes
1
answer
276
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6 follow
1
answer
Generate VCF file from csv/excel file
variant calling R vcf python sequencing written 11 weeks ago by daianagan • 10
1
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0
answers
108
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0
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How to get all variants in original BAM file with HaplotypeCaller? (No correction and BAMout)
variant calling haplotypecaller bamout sequencing written 12 weeks ago by mhmtgenc85 • 30
3
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0
answers
183
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0
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Tool to do Variant calling from contigs data
variant calling contigs written 3 months ago by de.mecquenem.ninon • 10
1
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1
answer
149
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1
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Find variants supported by at least 20 reads freebayes
variant calling freebayes written 3 months ago by kspata • 30 • updated 3 months ago by finswimmer ♦ 5.4k
1
vote
1
answer
118
views
1
answer
Can DiscoSNP++ deal with hybrid input of both paired-end and single-end reads?
discosnp++ variant calling snp discosnp written 3 months ago by emeline.a.favreau • 0 • updated 3 months ago by pierre.peterlongo • 830
6
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2
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227
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5 follow
2
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How do variant callers get genotype info?
variant calling indel snp phasing written 3 months ago by afzm • 20 • updated 3 months ago by Jeremy Leipzig ♦ 17k
4
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0
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199
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0
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Variant calling on single sample Macaque WGS data - advice please
variant calling haplotypecaller pon mutect2 written 3 months ago by YaGalbi • 1.3k
2
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0
answers
240
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0
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Creating a cell by SNP matrix
variant calling bcftools snp genotyping written 3 months ago by dominicdhall • 40
0
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0
answers
152
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0
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Please provide me your comments on the variant calling in this case
variant calling genome sequencing written 4 months ago by seta • 1.0k
1
vote
0
answers
159
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0
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A weird variant call from VarScan2 mpileup2snp
mpileup2snp variant calling varscan2 written 4 months ago by rayliu0115 • 0
7
votes
2
answers
264
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2
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Bcftools view. FREQ inclusion error.
freq annovar bcftools variant calling written 4 months ago by tcom111 • 10
0
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0
answers
240
views
0
answers
Best way to call low-frequency SNVs in antibody sequence from FASTQ
variant calling alignment antibody snp written 4 months ago by maquino1985 • 0
2
votes
1
answer
217
views
1
answer
Creating a Zebrafish reference genome for use by mpileup
vcf variant calling faidx rna-seq mpileup written 4 months ago by dominicdhall • 40
2
votes
1
answer
223
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1
answer
Can I use different versions of dbsnp for variant calling using GATK and variant annotation?
variant calling gatk dbsnp variant annotation written 4 months ago by dolevrahat • 10 • updated 4 months ago by finswimmer ♦ 5.4k
0
votes
0
answers
215
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0
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Mappability in duplicate gene?
variant calling exome sequencing written 4 months ago by Tania • 120
2
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1
answer
191
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1
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Please suggest your idea for variant calling analysis of many BAM files from whole genome sequencing
variant calling alingnment whole genome sequencing written 4 months ago by seta • 1.0k • updated 4 months ago by finswimmer ♦ 5.4k
3
votes
2
answers
241
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2
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samtools mpileup output only contains vcf header
variant calling samtools mpileup written 4 months ago by s102060125 • 10 • updated 4 months ago by swbarnes2 ♦ 4.0k
3
votes
1
answer
605
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1
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Strategy in WGS variant calling using GATK (CombineGVCF step)
variant calling gatk snp wgs written 5 months ago by prasundutta87 • 200
0
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3
answers
232
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6 follow
3
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VCF file manipulation for extracting the required information
variant calling vcf file genome sequencing written 5 months ago by seta • 1.0k • updated 5 months ago by cpad0112 • 8.9k
4
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2
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1.5k
views
2
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bwa mem: Passing a variable to read group
variant calling bwa-mem alignment bwa gatk written 10 months ago by rmf • 340
1
vote
1
answer
225
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1
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News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant calling news dna-seq strand ngs rare disease written 6 months ago by Genomics • 70
3
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1
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428
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1
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Base Recabiliration Filters out 88% of the reads
variant calling rna-seq written 7 months ago by Sharon • 340 • updated 5 months ago by Biostar ♦♦ 20
3
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0
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249
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0
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No mutations in BAM (IGV) but a mutation in final VCF?
variant calling gatk haplotypecaller bam igv written 5 months ago by mhmtgenc85 • 30 • updated 5 months ago by WouterDeCoster ♦ 32k
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