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<prev • 268 results • page 1 of 9 • next >
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freebayes running error on public data
variant calling alignment freebayes bam file written 2 days ago by anithanagaraj93 • 0
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How is genotype imputation used in variant calling pipelines
variant calling 1000g written 6 days ago by curious • 450
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GATK variant calling error
variant calling gatk snp written 17 days ago by endretoth • 20 • updated 17 days ago by Pierre Lindenbaum ♦ 131k
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Samtools variant caller for each individual sample
variant calling sequence samtools snp written 3.7 years ago by bharata1803 • 470 • updated 25 days ago by Biostar ♦♦ 20
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Merging BAM or VCF files, whats the difference?
vcf variant calling next-gen genotype deepvariant written 4 weeks ago by leonardo.rippel • 20
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Variant Calling for Organism aligned to a reference genome of not the same species
genome variant calling alignment written 6 weeks ago by caroline.c.dickson • 0
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Can variant callers distinguish between a snp and the end of an indel?
vcf 1000 genomes variant calling written 8 weeks ago by curious • 450 • updated 8 weeks ago by RamRS ♦ 30k
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How to build a truth set
variant calling haplotype snp written 10 weeks ago by leonardo.rippel • 20 • updated 10 weeks ago by RamRS ♦ 30k
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VariantEval GATK error
variant calling gatk error germline written 10 weeks ago by geneart$$ • 40
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GATK for RNA seq variant calling
variant calling rna-seq snp written 11 weeks ago by danson.wooi • 0
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GATK variant calling
variant calling gatk next-gen written 11 weeks ago by geneart$$ • 40
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How to deal with SNPs and INDELs called in hypermutated regions?
variant calling written 12 weeks ago by jeni • 30
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Exome data processing and variant calling based on GRCH38
variant calling grch38 alt-aware alignment written 3 months ago by nkausthu • 30 • updated 3 months ago by WouterDeCoster ♦ 44k
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Understanding bandPassSigma value in GATK HaplotypeCaller command
haplotypecaller gatk bandpasssigma variant calling written 3 months ago by Augusta • 20 • updated 3 months ago by genomax ♦ 91k
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Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
variant calling bcftools written 3 months ago by Hans • 70
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Where to find a list of hypermutated regions for hg19 assembly?
variant calling written 3 months ago by jeni • 30
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Tool to find double strand breaks
variant calling double strand breaks written 3 months ago by shelkmike • 290 • updated 3 months ago by Jean-Karim Heriche ♦ 23k
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How can I call both somatic and germline variants from bam file?
exome variant calling ngs somatic germline written 3 months ago by svp • 240 • updated 3 months ago by godth13teen • 50
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Invalid BAI magic number - TorrentVariantCaller
variant calling written 2.7 years ago by A Soggy Waffle • 0 • updated 3 months ago by kmzhou4 • 0
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Example code of MCMC on somatic variant calling (site specific error model)
variant calling written 4 months ago by CY • 550
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Evaluating RMSMappingQuality profile to set threshold
variant calling gatk snp filtering written 4 months ago by serpalma.v • 40 • updated 4 months ago by Nicolas Rosewick ♦ 9.2k
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Calling chrMT only from BAM
variant calling assembly mt written 6 months ago by igorm • 10
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[bcftools] [linux cluster] subset vcf.gz file per snp keeping headers and columns
variant calling software error bcftools snp written 5 months ago by mgois • 0 • updated 5 months ago by arnstrm • 1.8k
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allele frequency bcf tools
variant calling snp written 5 months ago by jh • 30 • updated 5 months ago by Kevin Blighe ♦ 66k
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How can I input a BAM file to the samtools mpileup command without using a text file?
variant calling bam samtools mpileup written 3.7 years ago by cristian • 250 • updated 5 months ago by Biostar ♦♦ 20
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Freebayes adjusting parameters to "force" homozygous call
variant calling freebayes written 8 months ago by User000 • 400 • updated 5 months ago by Biostar ♦♦ 20
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Suggested pipeline to perform variant calling for cancer exome sequencing samples of PDX models
variant calling pdx wes liquid biopsy written 9 months ago by svlachavas • 680 • updated 6 months ago by akshayb04 • 20
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Fatal error reading file snpEff.config with SnpEff
variant calling snpeff fatal error written 6 months ago by aguiller.mateos • 10
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Tool: ClinCNV: CNV detection from short reads
cna variant calling tool cnv written 12 months ago by German.M.Demidov • 1.8k
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Pisces and Octopus on WES
variant calling pisces wes octopus written 6 months ago by newbio17 • 240
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