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<prev • 188 results • page 1 of 7 • next >
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How to combine a multi sample VCF from multiple sample VCF and interpret a multi sample vcf of bacterial genome?
vcf gatk variant calling written 5 hours ago by S AR • 50 • updated 3 hours ago by Pierre Lindenbaum ♦ 116k
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Variant calling by using samtools and bcftools
variant calling samtools bcftools written 4 days ago by hasani.iut6 • 40 • updated 3 days ago by ATpoint ♦ 12k
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179
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Variant Calling (Samtools Mpileup): Error
variant calling samtools bcftools mpileup written 9 days ago by venuraherath • 20
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1
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369
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some good practices doubts
gene variant calling alignment written 14 months ago by prasundutta87 • 300 • updated 13 days ago by Biostar ♦♦ 20
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6 follow
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VCF file manipulation for extracting the required information
variant calling vcf genome sequencing written 8 months ago by seta • 1.1k • updated 4 weeks ago by zx8754 ♦ 6.2k
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Consensus VCF file from several variant callers
vcf variant calling freebayes gatk written 4 weeks ago by ajuiwl • 30 • updated 4 weeks ago by Pierre Lindenbaum ♦ 116k
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Merging population vcf files without gvcf
variant calling genome next-gen written 5 weeks ago by Myo Naung • 10 • updated 5 weeks ago by WouterDeCoster ♦ 35k
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1
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Somatic variant caller
variant calling somatic next-gen written 22 months ago by CY • 270 • updated 5 weeks ago by Biostar ♦♦ 20
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1
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Warning in GATK Picard MarkDuplicates
variant calling gatk picard markduplicates written 5 weeks ago by Mehulsharma.253 • 10 • updated 5 weeks ago by Pierre Lindenbaum ♦ 116k
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Running Freebayes on 100+ Samples
variant calling bacteria snp written 8 weeks ago by tpaisie • 70
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1
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257
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Samtools/bcftools force-calling using an input set of variants
variant calling vcf samtools bcftools written 10 weeks ago by floris.barthel • 20
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reformat forward and reverse read pairs for variant analysis of exons
variant calling assembly exon capture gene written 11 weeks ago by kspata • 40
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158
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DP and DP at site do not match using only 1 sample in VCF
vcf variant calling gatk written 3 months ago by ajuiwl • 30
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Best practices for variant calling on multiple sequencing runs of the same sample
variant calling vcf snps written 3 months ago by Damian Kao ♦ 15k • updated 3 months ago by swbarnes2 ♦ 4.7k
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What is the advantage of variant calling using RNA-seq technique?
variant calling galaxy rna-seq written 7 months ago by akilabioinfo • 0 • updated 3 months ago by jpuntomarcos • 20
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4/6 genotype in VCF
vcf variant calling genotype written 3 months ago by ajuiwl • 30 • updated 3 months ago by Pierre Lindenbaum ♦ 116k
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485
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Help with Sanger Imputation Service
variant calling imputation rna-seq written 4 months ago by sandKings • 10
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Sanger Imputation Service - The input file sanity check failed : faidx_fetch_seq failed at JH636052.4:4111085
rnaseq variant calling written 4 months ago by sandKings • 10
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Hard filtering results of vcf file for multiple samps
variant calling gatk hard filtering written 5 months ago by seta • 1.1k • updated 5 months ago by finswimmer ♦ 8.9k
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1
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251
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Applying BQSR before running GATK's HaplotypeCaller on whole-genome sequencing data
variant calling haplotypecaller written 5 months ago by seta • 1.1k • updated 5 months ago by finswimmer ♦ 8.9k
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Extracting Variants from large set of variants
variant calling vcf wgs data written 5 months ago by bioinfo355 • 0 • updated 5 months ago by ammar.husami • 0
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1
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265
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variant calling after reference genome is updated
variant calling wgs snp written 6 months ago by prasundutta87 • 300
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1
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565
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6 follow
1
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Generate VCF file from csv/excel file
variant calling R vcf python sequencing written 6 months ago by daianagan • 10
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How to get all variants in original BAM file with HaplotypeCaller? (No correction and BAMout)
variant calling haplotypecaller bamout sequencing written 6 months ago by mhmtgenc85 • 30
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263
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Tool to do Variant calling from contigs data
variant calling contigs written 7 months ago by de.mecquenem.ninon • 10
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245
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Find variants supported by at least 20 reads freebayes
variant calling freebayes written 7 months ago by kspata • 40 • updated 7 months ago by finswimmer ♦ 8.9k
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184
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1
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Can DiscoSNP++ deal with hybrid input of both paired-end and single-end reads?
discosnp++ variant calling snp discosnp written 7 months ago by emeline.a.favreau • 0 • updated 7 months ago by pierre.peterlongo • 830
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2
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291
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5 follow
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How do variant callers get genotype info?
variant calling indel snp phasing written 7 months ago by afzm • 20 • updated 7 months ago by Jeremy Leipzig ♦ 18k
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310
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Variant calling on single sample Macaque WGS data - advice please
variant calling haplotypecaller pon mutect2 written 7 months ago by YaGalbi • 1.4k
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352
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Creating a cell by SNP matrix
variant calling bcftools snp genotyping written 7 months ago by dominicdhall • 40
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