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<prev • 202 results • page 1 of 7 • next >
3
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VarScan warning and exit after Invalid format for pileup at line 1
software error variant calling wes written 23 hours ago by n.tear • 0 • updated 23 hours ago by RamRS ♦ 21k
4
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1
answer
716
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1
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Identify homopolymer stretches in a given genome
variant calling indel homopolymers snp written 18 months ago by ATpoint ♦ 15k
7
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1
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1.3k
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1
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Tool: Arriba: Fast and accurate gene fusion detection from RNA-Seq data
variant calling tool cancer fusion rna-seq gene written 14 months ago by uhrigs • 70
4
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2
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165
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2
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GATK4 Mutect2 variants IDs not shown
gatk4 variant calling mutect2 written 8 weeks ago by dganiewich • 40
0
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112
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0
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Bcftools Call method not detecting single nucleotide deletions?
variant calling bcftools samtools variant written 27 days ago by kennyworkman • 0
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71
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0
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Variant calls for 1% mix NA12878 with NA12877
variant calling written 27 days ago by ngs_engineer • 0
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71
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0
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XADL field in VCF from Variation Graphs
variant calling written 29 days ago by ziaursani • 0
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80
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% of I averaged across each A sequenced
variant calling rna-seq written 4 weeks ago by cwilson • 0 • updated 4 weeks ago by zx8754 ♦ 7.1k
2
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0
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144
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0
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Tool: Using NGS replicates for variant calling
variant calling ngs sequencing tool somatic mutation written 7 weeks ago by swkim • 20
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113
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0
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Strelka2 and single tumour sample
variant calling written 8 weeks ago by sbilobram • 10
3
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1
answer
125
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1
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CYP2D6 Variant Calling
variant calling written 9 weeks ago by twesigomwedavid • 0
8
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1
answer
299
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1
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Genomics (DNA) Pipeline - Example
variant calling annotation alignment python written 9 weeks ago by caspase8mach • 0
1
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0
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207
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0
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Difference between Private SNPs and Singleton SNPs
variant calling gatk snps snp population genetics written 10 weeks ago by prasundutta87 • 330
1
vote
1
answer
89
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1
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Does it make sense to repeat the assembly step in variant calling?
variant calling written 11 weeks ago by ajuiwl • 30 • updated 11 weeks ago by Devon Ryan ♦ 89k
2
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1
answer
122
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1
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Counting total variants
genome variant calling next-gen written 12 weeks ago by Hadi M • 10 • updated 12 weeks ago by finswimmer ♦ 11k
1
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1
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257
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1
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vcf calculation of allele counts and allele number
variant calling written 3 months ago by susan.klein • 0 • updated 3 months ago by finswimmer ♦ 11k
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2
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306
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2
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How to combine a multi sample VCF from multiple sample VCF and interpret a multi sample vcf of bacterial genome?
vcf gatk variant calling written 3 months ago by S AR • 50 • updated 3 months ago by Pierre Lindenbaum ♦ 119k
1
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1
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444
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1
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Variant calling by using samtools and bcftools
variant calling samtools bcftools written 3 months ago by hasani.iut6 • 40 • updated 3 months ago by ATpoint ♦ 15k
3
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313
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0
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Variant Calling (Samtools Mpileup): Error
variant calling samtools bcftools mpileup written 3 months ago by venuraherath • 20
5
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1
answer
424
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1
answer
some good practices doubts
gene variant calling alignment written 17 months ago by prasundutta87 • 330 • updated 3 months ago by Biostar ♦♦ 20
1
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3
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428
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6 follow
3
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VCF file manipulation for extracting the required information
variant calling vcf genome sequencing written 12 months ago by seta • 1.1k • updated 4 months ago by zx8754 ♦ 7.1k
1
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1
answer
223
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1
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Consensus VCF file from several variant callers
vcf variant calling freebayes gatk written 4 months ago by ajuiwl • 30 • updated 4 months ago by Pierre Lindenbaum ♦ 119k
1
vote
1
answer
202
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1
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Merging population vcf files without gvcf
variant calling genome next-gen written 4 months ago by Myo Naung • 10 • updated 4 months ago by WouterDeCoster ♦ 38k
3
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1
answer
868
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1
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Somatic variant caller
variant calling somatic next-gen written 2.1 years ago by CY • 310 • updated 4 months ago by Biostar ♦♦ 20
1
vote
1
answer
296
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1
answer
Warning in GATK Picard MarkDuplicates
variant calling gatk picard markduplicates written 4 months ago by Mehulsharma.253 • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 119k
0
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1
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293
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1
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Running Freebayes on 100+ Samples
variant calling bacteria snp written 5 months ago by tpaisie • 70
6
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1
answer
459
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1
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Samtools/bcftools force-calling using an input set of variants
variant calling vcf samtools bcftools written 5 months ago by floris.barthel • 40
0
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147
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reformat forward and reverse read pairs for variant analysis of exons
variant calling assembly exon capture gene written 5 months ago by kspata • 40
1
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1
answer
226
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1
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DP and DP at site do not match using only 1 sample in VCF
vcf variant calling gatk written 6 months ago by ajuiwl • 30
0
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2
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282
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2
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Best practices for variant calling on multiple sequencing runs of the same sample
variant calling vcf snps written 6 months ago by Damian Kao ♦ 15k • updated 6 months ago by swbarnes2 ♦ 5.2k
<prev • 202 results • page 1 of 7 • next >
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