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<prev • 152 results • page 1 of 6 • next >
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VCF file manipulation for extracting the required information
variant calling vcf file genome sequencing written 10 hours ago by seta • 960 • updated 8 hours ago by cpad0112 • 4.5k
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Strategy in WGS variant calling using GATK (CombineGVCF step)
variant calling gatk snp wgs written 1 day ago by prasundutta87 • 160
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bwa mem: Passing a variable to read group
variant calling bwa-mem alignment bwa gatk written 5 months ago by rmf • 250
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News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant calling news dna-seq strand ngs rare disease written 5 weeks ago by Genomics • 70
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Base Recabiliration Filters out 88% of the reads
variant calling rna-seq written 10 weeks ago by Sharon • 250 • updated 14 days ago by Biostar ♦♦ 20
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No mutations in BAM (IGV) but a mutation in final VCF?
variant calling gatk haplotypecaller bam igv written 14 days ago by mhmtgenc85 • 30 • updated 14 days ago by WouterDeCoster ♦ 27k
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Variant calling in genomic chunks
variant calling vcf written 15 days ago by Damian Kao ♦ 14k • updated 14 days ago by finswimmer • 1.5k
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Are there any human genome variant callers and BAM indexing and sorting tools to run on Windows 10?
variant calling windows bam indexing written 8 weeks ago by mathisdead • 0 • updated 17 days ago by cpad0112 • 4.5k
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Should we discard a variant if it pass many filters and fails one?
variant calling written 4 weeks ago by Sharon • 250 • updated 23 days ago by Biostar ♦♦ 20
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What are the range or ceiling of metrics like DP4 , MQP, etc to filter variants?
variant calling written 4 weeks ago by Dayna • 10 • updated 4 weeks ago by Kevin Blighe ♦ 17k
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5 follow
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Somatic vs Germline Variant Calling
variant calling somatic sequencing germline written 4 weeks ago by checkyodna • 0 • updated 4 weeks ago by Ram ♦ 14k
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How to visualize large VCF files
vcf variant calling snps variant snp written 23 months ago by bioinforesearchquestions • 120 • updated 4 weeks ago by Biostar ♦♦ 20
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Why did Bedtools intersect output a zero byte file
bedtools vcf variant calling written 5 weeks ago by jaqx008 • 10
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Bedtools intersect error
bedtools vcf .bed variant calling gatk written 5 weeks ago by jaqx008 • 10 • updated 5 weeks ago by Alex Reynolds ♦ 23k
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intersection, Bed file and VCF.
bedtools vcf intersect orfs variant calling written 7 weeks ago by jaqx008 • 10
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Should we ignore variants in any duplicated gene, or only ignore variants in duplicated segments?
variant calling written 5 weeks ago by Tania • 110
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Why FS is low when reads aligned from strand seem biased?
exome variant calling vcf written 5 weeks ago by Sharon • 250 • updated 5 weeks ago by finswimmer • 1.5k
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Having Issues with Variant Calling
variant calling samtools snp sequencing written 6 weeks ago by shola_aleru • 10 • updated 6 weeks ago by Pierre Lindenbaum ♦ 106k
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Is there a full one link for exome raw fastq to vcf pipleine in gatk?
variant calling exome data written 6 weeks ago by Tania • 110 • updated 6 weeks ago by Pierre Lindenbaum ♦ 106k
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Can you assume variants not in VCF are all monomorphic for the reference allele?
vcf variant calling imputation missing variants written 7 weeks ago by wangdavid758 • 10 • updated 7 weeks ago by Pierre Lindenbaum ♦ 106k
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How many reads needed to be sure a variant does not exist?
variant calling written 7 weeks ago by steve • 1.4k • updated 7 weeks ago by Gabriel R. • 2.4k
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Basics about sequencing/alignment and variant calling
variant calling alignment sequencing written 8 weeks ago by ernestrv0101 • 0 • updated 7 weeks ago by d-cameron • 1.5k
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Multisample vcf to table
variant calling snp sequencing written 22 months ago by Myggan • 20 • updated 8 weeks ago by kirannbishwa01 • 780
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Annovar annotation with refGene Database How to Dismiss Exon number and Gene Symbol from AAchange Column?
variant calling annovar database refgene aachange written 9 weeks ago by mhmtgenc85 • 30 • updated 8 weeks ago by Biostar ♦♦ 20
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Differences in RNAseq Variant Calling and Allele Specific Expression
variant calling allele specific expression rna-seq written 8 weeks ago by serpalma.v • 10
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Invalid BAI magic number - TorrentVariantCaller
variant calling written 8 weeks ago by stphnwist • 0
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1
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1
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Understanding the VCF data from my variant calling
vcf variant calling snps igv indels written 9 weeks ago by jaqx008 • 10 • updated 9 weeks ago by jared.andrews07 • 680
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hg19 or hg38 for variant calling
genome variant calling assembly written 9 weeks ago by jsneaththompson • 40 • updated 9 weeks ago by h.mon ♦ 13k
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Need tools recommendation for plant RNAseq data
variant calling assembly plants rna-seq written 9 weeks ago by bioinforesearchquestions • 120 • updated 9 weeks ago by apeltzer • 100
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Tool: Arriba: Fast and accurate gene fusion detection from RNA-Seq data
variant calling tool cancer fusion rna-seq gene written 9 weeks ago by uhrigs • 20
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