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<prev • 220 results • page 1 of 8 • next >
17
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9 follow
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Tool: ClinCNV: CNV detection from short reads
cna variant calling tool cnv written 25 days ago by kuckunniwid • 480
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93
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soft-clipping during alignment and variant calling query
variant calling bwa-mem alignment gatk written 26 days ago by prasundutta87 • 360 • updated 3 days ago by Biostar ♦♦ 20
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87
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Can someone explain what F1R2 and F2R1 counts mean?
variant calling f2r1 f1r2 mutect2 written 27 days ago by nickeener • 0
2
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2
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176
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Difference between variant calling and genotyping
variant calling genotyping written 9 weeks ago by Floydian_slip • 130 • updated 9 weeks ago by Charles Warden ♦ 7.3k
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VarDict Amplicon-Aware Calling with barcoded seq data
variant calling next-gen molecular barcode written 23 months ago by jsneaththompson • 80 • updated 11 weeks ago by Biostar ♦♦ 20
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125
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Why invariant blocks in GATK consistently have very low quality scores (but not variant sites)
variant calling gatk snp written 3 months ago by yixianshuiesuan • 0
1
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1
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124
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1
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GATK multi sample variant calling
variant calling gatk snp written 3 months ago by cetin.m • 30
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1
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196
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1
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VarScan.v2.4.3 generating incomplete or partial VCF file
variant calling exomeseq snp varscan written 3 months ago by Sandeep • 250 • updated 3 months ago by 2nelly • 170
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1
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154
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Effect size in power analysis when dealing with Poisson based variant caller
variant calling written 3 months ago by CY • 420 • updated 3 months ago by markus.riester • 480
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206
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Are there any tools that can extract somatic variants from matched normal tumor vcf files?
variant calling ngs dna-seq written 3 months ago by Sandeep • 250 • updated 3 months ago by Kevin Blighe ♦ 51k
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99
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Difference between mpileup and HaplotypeCaller -ERC BP_RESOLUTION
variant calling haplotypecaller mpileup written 3 months ago by CY • 420
4
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1
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230
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1
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Samtools mplileup detects wrong INDEL positions
variant calling samtools count nuceotides mpileup written 4 months ago by vit.filippo • 40 • updated 4 months ago by finswimmer ♦ 12k
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214
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Filter out low coverage and minor alleles of a frequency above 40%.
vcf variant calling freebayes hiv written 4 months ago by pennakiza • 20 • updated 4 months ago by bari.ballew • 190
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209
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Why am I getting fewer variants with more samples?
variant calling gatk snp written 4 months ago by Ace • 70
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1
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148
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How to interpret results from GATK ApplyVQSR
variant calling gatk applyvqsr filtering written 4 months ago by kittys • 0 • updated 4 months ago by Nicolas Rosewick ♦ 8.3k
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353
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VarScan warning and exit after Invalid format for pileup at line 1
software error variant calling wes written 6 months ago by n.tear • 10 • updated 5 months ago by Biostar ♦♦ 20
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5.0k
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Applying hard filters for variants
variant calling gatk snps variants written 4.0 years ago by bioinforesearchquestions • 270 • updated 5 months ago by Biostar ♦♦ 20
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432
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5 follow
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Forum: How can unique molecular identifiers (UMIs) help to reduce quantitative biases?
variant calling ngs unique molecular identifier forum written 5 months ago by David Langenberger ♦ 9.1k
2
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387
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Tool: Using NGS replicates for variant calling
variant calling ngs sequencing tool somatic mutation written 8 months ago by swkim • 20 • updated 5 months ago by stephannie.baker8 • 10
1
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143
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Test Freebayes on sample files
variant calling freebayes sequencing written 5 months ago by Bella_p • 50
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1
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678
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1
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Creating a cell by SNP matrix
variant calling bcftools snp genotyping written 17 months ago by dominicdhall • 40 • updated 5 months ago by niklas.lang • 10
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184
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Getting only Indels and no SNPs after variant calling variant calling using HaplotypeCaller
variant calling gatk bam rna-seq snp written 6 months ago by Susmita Mandal • 50
1
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2
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259
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2
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GATK HC mis-reading chromosomes
variant calling software error bam files snp written 6 months ago by Ace • 70
4
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1
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920
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1
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Identify homopolymer stretches in a given genome
variant calling indel homopolymers snp written 2.0 years ago by ATpoint ♦ 25k
8
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2.3k
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5 follow
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Tool: Arriba: Fast and accurate gene fusion detection from RNA-Seq data
variant calling tool cancer fusion rna-seq gene written 21 months ago by uhrigs • 80
4
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1
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632
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1
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GATK4 Mutect2 variants IDs not shown
gatk4 variant calling mutect2 written 8 months ago by dganiewich • 90
0
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287
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Bcftools Call method not detecting single nucleotide deletions?
variant calling bcftools samtools variant written 7 months ago by kennyworkman • 0
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217
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Variant calls for 1% mix NA12878 with NA12877
variant calling written 7 months ago by ngs_engineer • 0
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199
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XADL field in VCF from Variation Graphs
variant calling written 7 months ago by ziaursani • 0
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151
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% of I averaged across each A sequenced
variant calling rna-seq written 7 months ago by cwilson • 0 • updated 7 months ago by zx8754 ♦ 8.3k
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