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variant calling • reset1
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written 16 days ago by
jsneaththompson • 0
• updated
16 days ago by
Dan Gaston ♦ 6.8k
21
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4
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2.2k
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4
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written 2.7 years ago by
14134125465346445 • 3.2k
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4 weeks ago by
vdauwera • 550
3
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1.2k
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0
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125
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written 6 weeks ago by
jsneaththompson • 0
• updated
6 weeks ago by
tangming2005 • 2.1k
2
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1
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142
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1
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written 8 weeks ago by
Lina F • 80
• updated
8 weeks ago by
Brian Bushnell ♦ 12k
3
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1
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186
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written 9 weeks ago by
mirza • 70
• updated
9 weeks ago by
Santosh Anand • 2.3k
3
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1
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141
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1
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written 9 weeks ago by
murrayln • 10
• updated
9 weeks ago by
Pierre Lindenbaum ♦ 95k
1
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2
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133
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2
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written 9 weeks ago by
rafa.rios.50 • 40
• updated
9 weeks ago by
harold.smith.tarheel • 3.6k
2
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1
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183
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1
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3
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2
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394
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8 follow
2
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written 10 weeks ago by
divya.srivastava33 • 10
• updated
10 weeks ago by
AB • 60
1
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0
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193
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0
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2
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1
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128
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1
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written 11 weeks ago by
Jautis • 240
• updated
11 weeks ago by
Santosh Anand • 2.3k
2
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1
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193
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1
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written 3 months ago by
CY • 10
• updated
3 months ago by
markus.riester • 80
9
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2
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175
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2
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2
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0
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272
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1
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1
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209
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1
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written 3 months ago by
dd.catania • 0
• updated
3 months ago by
bharata1803 • 220
4
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1
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286
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5 follow
1
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written 4 months ago by
human_genomeXXX • 0
• updated
4 months ago by
Brian Bushnell ♦ 12k
Recent Votes
- C: RNA Seq data network analysis
- A: Run Samtools on multiple files
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- A: Run Samtools on multiple files
- C: Run Samtools on multiple files
- C: FASTQ- Reverse reads of paired end sequence worse than forward reads
- A: Run Samtools on multiple files
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Recent Replies
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C: Extension of reads by
genomax ♦ 29k
How do i also extend with high quality score? Can I ask this? Why are you fascinated with ge...
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C: FASTQ- Reverse reads of paired end sequence worse than forward reads by
genomax ♦ 29k
See Illumina tech support's answer quoted by @Paul [in this thread][1]. Scores as high as 45 are ...
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C: FASTQ- Reverse reads of paired end sequence worse than forward reads by
genomax ♦ 29k
To get the original illumina read ID's try `fastq-dump` with `-F` option.
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C: spliting sdf file by
WouterDeCoster ♦ 19k
It would be definitely helpful if you show a snippet of how your file looks like - you can't expe...
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A: Run Samtools on multiple files by
WouterDeCoster ♦ 19k
Using gnu parallel in its simplest form: ls *.bam | parallel -j 8 'samtools sort -@ 7 {} &g...
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C: Run Samtools on multiple files by
Vijay Lakhujani • 930
On a separate note, this is really cool, suggestions to learn how to use "make" (tutorial links) ...
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C: Run Samtools on multiple files by
Vijay Lakhujani • 930
May be I am asking silly question, does that "16" means the no. of threads?
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C: Run Samtools on multiple files by
Vijay Lakhujani • 930
+1 Thanks venu for the suggestion, though I am clueless why the loop I suggested does not work fo...
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C: FASTQ- Reverse reads of paired end sequence worse than forward reads by
dilawerkh4 • 0
Hi Brian, These are the 1st few lines from the fastq generated with fastq-dump from SRA. What do...
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A: Run Samtools on multiple files by
Pierre Lindenbaum ♦ 95k
create the following '**Makefile**' SHELL=/bin/bash BAMS=$(shell ls -1 *.bam) define...
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C: Run Samtools on multiple files by
venu • 3.9k
Just a comment, when you are defining output filename, it's always better to use `basename` in or...
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C: goseq analysis with only geneid or genesymbol by
Devon Ryan ♦ 68k
Look at what goseq needs as input. Compare that to what you have. Make up constant numbers for th...
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