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<prev • 280 results • page 1 of 10 • next >
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Mitochondrial light/heavy strand allocation of variants
variant calling mitochondria written 7 days ago by caearthworms • 0
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98
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Correcting variant allele fraction using tumor purity (experimentally measured)
variant calling sequencing next-gen snp cancer written 29 days ago by Luca Beltrame • 220
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107
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Platypus variant caller error
variant calling snp written 4 weeks ago by User000 • 420
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14 follow
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Tool: ClinCNV: CNV detection from short reads
cna variant calling tool cnv written 15 months ago by German.M.Demidov • 1.9k
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116
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Obtaining coverage for rna-seq data
bedtools variant calling samtools rna-seq written 5 weeks ago by rotemkat • 10
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128
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Empty vcf with strelka
variant calling strelka germline written 5 weeks ago by NT • 0
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Basics about sequencing/alignment and variant calling
variant calling alignment sequencing written 2.9 years ago by ernestrv0101 • 0 • updated 5 weeks ago by Biostar ♦♦ 20
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pipeline for variant discovery in target resequencing
ion torrent variant calling ts written 5 weeks ago by sarastrafella.ss • 0
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121
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Variant Calling - Ion Torrent
variant calling iontorrent bam written 7 weeks ago by AndreaSibi • 0
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104
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unannotated_multisample-VCF + annotated-TSV = multisample_annotated-VCF
variant calling written 7 weeks ago by bio.pelayo • 0
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152
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Mutation calling directly from FASTQ files
variant calling dna-seq written 8 weeks ago by graeme.thorn • 50 • updated 8 weeks ago by WouterDeCoster ♦ 45k
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109
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Correct number of detected variants by coverage
variant calling written 8 weeks ago by jeni • 30
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194
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HaplotypeCaller GVCF on one bam files
variant calling gatk haplotypecaller written 9 weeks ago by rayzghimire • 0
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155
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The need for matched normal in variant-calling: gene-panel vs. whole exome
variant calling targeted sequencing mutect written 9 weeks ago by michal.inbar • 0
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Tool: Arriba: Fast and accurate gene fusion detection from RNA-Seq data
variant calling tool cancer fusion rna-seq gene written 2.9 years ago by uhrigs • 130
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freebayes running error on public data
variant calling alignment freebayes bam file written 11 weeks ago by anithanagaraj93 • 0
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147
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How is genotype imputation used in variant calling pipelines
variant calling 1000g written 12 weeks ago by curious • 470
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327
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GATK variant calling error
variant calling gatk snp written 3 months ago by endretoth • 20 • updated 3 months ago by Pierre Lindenbaum ♦ 133k
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1
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Samtools variant caller for each individual sample
variant calling sequence samtools snp written 3.9 years ago by bharata1803 • 490 • updated 3 months ago by Biostar ♦♦ 20
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213
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Merging BAM or VCF files, whats the difference?
vcf variant calling next-gen genotype deepvariant written 3 months ago by leonardo.rippel • 20
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Variant Calling for Organism aligned to a reference genome of not the same species
genome variant calling alignment written 4 months ago by caroline.c.dickson • 0
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214
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Can variant callers distinguish between a snp and the end of an indel?
vcf 1000 genomes variant calling written 4 months ago by curious • 470 • updated 4 months ago by _r_am ♦ 32k
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How to build a truth set
variant calling haplotype snp written 5 months ago by leonardo.rippel • 20 • updated 5 months ago by _r_am ♦ 32k
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233
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1
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VariantEval GATK error
variant calling gatk error germline written 5 months ago by geneart$$ • 40
1
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293
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GATK for RNA seq variant calling
variant calling rna-seq snp written 5 months ago by danson.wooi • 0
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297
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GATK variant calling
variant calling gatk next-gen written 5 months ago by geneart$$ • 40
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150
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How to deal with SNPs and INDELs called in hypermutated regions?
variant calling written 5 months ago by jeni • 30
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Exome data processing and variant calling based on GRCH38
variant calling grch38 alt-aware alignment written 5 months ago by nkausthu • 30 • updated 5 months ago by WouterDeCoster ♦ 45k
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170
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Understanding bandPassSigma value in GATK HaplotypeCaller command
haplotypecaller gatk bandpasssigma variant calling written 5 months ago by Augusta • 20 • updated 5 months ago by GenoMax ♦ 94k
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Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
variant calling bcftools written 5 months ago by Hans • 70
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