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samtools variant calling workflow
variant calling realignment samtools written 3.3 years ago by mirza110 • updated 3.3 years ago by Santosh Anand5.1k
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Somatic vs Germline Variant Calling
variant calling somatic sequencing germline written 2.4 years ago by checkyodna20 • updated 2.4 years ago by RamRS28k
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Avilable better SNPcalling tools (except GATK and Samtools)
variant calling snp written 5.8 years ago by murali100 • updated 5.8 years ago by RamRS28k
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mitochondrial variant calling
variant calling mtdna written 5.6 years ago by Tommy Carstensen210 • updated 5.6 years ago by tom.b9210
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Variant Calling accounting for ALT contigs
variant calling gatk freebayes alt contig written 5.0 years ago by Benilton Carvalho20 • updated 5.0 years ago by Biostar ♦♦ 20
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Regarding Human Exon Variant Reference
variant calling next-gen sequencing written 4.5 years ago by k.manojkumar299110 • updated 4.5 years ago by Garan620
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GATK GenotypeGVCFs 8 weeks runtime
variant calling gatk genotypegvcfs genotyping written 4.3 years ago by esticca20 • updated 4.3 years ago by John12k
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Detecting gene insertions with DiscoSNP
variant calling discosnp written 2.9 years ago by laeb60 • updated 2.9 years ago by Biostar ♦♦ 20
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Infer somatic mutations without normal control
variant calling somatic mutation written 2.6 years ago by CY510 • updated 2.6 years ago by markus.riester500
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MuTect2 still discard many reads, how to fix?
variant calling rna-seq written 2.5 years ago by Sharon480 • updated 2.5 years ago by dariober11k
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6
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Variant calling in genomic chunks
variant calling vcf written 2.3 years ago by Damian Kao15k • updated 2.3 years ago by finswimmer13k
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How do variant callers get genotype info?
variant calling indel snp phasing written 2.2 years ago by afzm20 • updated 2.2 years ago by Jeremy Leipzig19k
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Computational resources for WGS variant calling
variant calling wgs bwakit openstack gatk written 8 months ago by alesssia560 • updated 7 months ago by Jeremy Leipzig19k
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Small CNV calling (exome deletions and insertions)
exome variant calling cnv target written 6.1 years ago by mafonso10 • updated 6.1 years ago by DG7.1k
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Comparing VCF Files
vcf variant calling written 6.0 years ago by Daniel E Cook240 • updated 6.0 years ago by smithtomsean180
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