Showing: variant callingreset
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21
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18
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13 follow
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5
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4
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1.9k
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samtools variant calling workflow
variant calling realignment samtools written 2.4 years ago by mirza80 • updated 2.4 years ago by Santosh Anand4.9k
8
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1
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2.0k
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5 follow
1
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12
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2
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2.7k
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11 follow
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Somatic vs Germline Variant Calling
variant calling somatic sequencing germline written 17 months ago by checkyodna20 • updated 17 months ago by RamRS24k
4
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0
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285
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5 follow
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11
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1
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1.0k
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1
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3
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1
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1.4k
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1
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Avilable better SNPcalling tools (except GATK and Samtools)
variant calling snp written 4.9 years ago by murali90 • updated 4.9 years ago by RamRS24k
4
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2
answers
4.7k
views
2
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mitochondrial variant calling
variant calling mtdna written 4.7 years ago by Tommy Carstensen160 • updated 4.7 years ago by tom.b9210
2
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0
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1.2k
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0
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Variant Calling accounting for ALT contigs
variant calling gatk freebayes alt contig written 4.1 years ago by Benilton Carvalho20 • updated 4.1 years ago by Biostar ♦♦ 20
2
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2
answers
858
views
2
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Regarding Human Exon Variant Reference
variant calling next-gen sequencing written 3.6 years ago by k.manojkumar299110 • updated 3.6 years ago by Garan580
15
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6
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3.7k
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6
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4
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1
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2.9k
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1
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GATK GenotypeGVCFs 8 weeks runtime
variant calling gatk genotypegvcfs genotyping written 3.4 years ago by esticca20 • updated 3.4 years ago by John12k
5
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1
answer
1.6k
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1
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7
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1
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1.5k
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6 follow
1
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3
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0
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537
views
0
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Detecting gene insertions with DiscoSNP
variant calling discosnp written 2.0 years ago by laeb60 • updated 23 months ago by Biostar ♦♦ 20
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2
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4.2k
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6 follow
2
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4
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1
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824
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5 follow
1
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MuTect2 still discard many reads, how to fix?
variant calling rna-seq written 19 months ago by Sharon440 • updated 19 months ago by dariober10k
5
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0
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401
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5 follow
0
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5
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2
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550
views
6 follow
2
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Variant calling in genomic chunks
variant calling vcf written 17 months ago by Damian Kao15k • updated 17 months ago by finswimmer12k
6
votes
2
answers
420
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5 follow
2
answers
How do variant callers get genotype info?
variant calling indel snp phasing written 15 months ago by afzm20 • updated 15 months ago by Jeremy Leipzig18k
4
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1
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481
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1
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4
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2
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2.7k
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2
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10
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5
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3.4k
views
5
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Small CNV calling (exome deletions and insertions)
exome variant calling cnv target written 5.2 years ago by mafonso10 • updated 5.2 years ago by Dan Gaston7.1k
5
votes
3
answers
5.3k
views
3
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Comparing VCF Files
vcf variant calling written 5.1 years ago by Daniel E Cook220 • updated 5.1 years ago by smithtomsean170
0
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2
answers
1.3k
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2
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SNVer error: chrome not found in Reference
software error variant calling written 5.1 years ago by anjali.gopal9150 • updated 3.1 years ago by rse90
5
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2
answers
6.3k
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2
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Variant callers for Ion Torrent data?
ion torrent variant calling tools written 5.0 years ago by Jordan1.1k • updated 5.0 years ago by Robert Sicko570
0
votes
0
answers
1.8k
views
0
answers
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