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<prev • 59 results • page 1 of 2 • next >
4
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1
answer
268
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1
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What does BAF mean?
variant-calling baf written 12 weeks ago by Brian Bushnell ♦ 13k • updated 10 weeks ago by bernatgel • 710
0
votes
1
answer
221
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1
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Calculate mean_GQ value from individual GQ values in a multi-sample VCF file
vcf gatk next-gen variant-calling sequencing written 5 months ago by aham • 30 • updated 5 months ago by Petr Ponomarenko • 2.4k
0
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0
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252
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complex indel precludes detection of overlapping SNPs
variant-calling pooled sample freebayes written 5 months ago by harold.smith.tarheel • 3.7k
5
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0
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392
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5 follow
0
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Samtools: merge and mpileup vs mpileup alone for variant-calling with multiple BAM
variant-calling merge samtools mpileup snp written 6 months ago by Rob • 80
2
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1.0k
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0
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Next-Generation Sequecing And Quantitative Traits Association Study
variant-calling ngs sequencing written 3.6 years ago by sorento7 • 30 • updated 8 months ago by Biostar ♦♦ 20
2
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1
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512
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1
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Extract allele frequencies from VCF
variant-calling vcf crisp written 11 months ago by mufernando • 0 • updated 11 months ago by Noushin N • 390
1
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1
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435
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1
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Coming with a result with many VCF files?
vcf variant-calling mutation-calling written 16 months ago by morovatunc • 360 • updated 14 months ago by Denise - Open Targets • 3.9k
9
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1
answer
809
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1
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Why a true variant is not getting called by Haplotypecaller.
variant-calling haplotypecaller next-gen written 17 months ago by Ashish Kumar Singh • 10
0
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0
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722
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0
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Using GIAB exome data to test targetome variant-calling pipeline
variant-calling whole-exome targetome giab written 18 months ago by nbhardwaj • 40
4
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6
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9.5k
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11 follow
6
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Variant Calling With Bcftools Call
variant-calling bcftools samtools mpileup written 3.4 years ago by tayebwajb • 80 • updated 18 months ago by vladimir.kovacevic • 40
2
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1
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795
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1
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Sensitivity of variant calling
variant-calling next-gen sequencing written 2.2 years ago by szuszmok • 40 • updated 2.2 years ago by Len Trigg • 810
35
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2
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14k
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12 follow
2
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Difference Between Somatic And Germline Variant Calling?
variant-calling somatic gatk written 4.0 years ago by William • 3.9k • updated 2.3 years ago by Biostar ♦♦ 20
7
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1
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1.7k
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5 follow
1
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When Is A Heterozygous Call Not Heterozygous?
exome variant-calling human written 3.5 years ago by Chris Cole • 630 • updated 2.4 years ago by Biostar ♦♦ 20
1
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1
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1.6k
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1
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NOT RESETTING NORMAL error using Varscan2
variant-calling somatic varscan2 snp written 2.7 years ago by Jordan • 1.0k • updated 2.7 years ago by Ying W • 3.6k
89
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6
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27k
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39 follow
6
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Best Software For Detection Of Somatic Mutations From Matched Tumor:Normal Ngs Data
variant-calling somatic mutation variant snv written 5.4 years ago by Travis • 2.7k • updated 2.7 years ago by Malachi Griffith ♦ 15k
2
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0
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1.3k
views
0
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Problem generating VCFs from MuTect variant caller
variant-calling vcf mutect written 2.9 years ago by Jordan • 1.0k
4
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2
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2.1k
views
2
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Vcf File From Mpileup ... What Next
variant-calling snps samtools written 3.5 years ago by Dataminer • 2.5k • updated 3.1 years ago by Biostar ♦♦ 20
3
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0
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1.6k
views
0
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Need help understanding read depth for somaticsniper vcf's
variant-calling vcf somaticsniper depth written 3.1 years ago by Jordan • 1.0k
4
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1
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1.8k
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1
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How To Represent Two Different Indels At The Same Position In A Multisample Vcf?
vcf variant-calling sequencing written 3.9 years ago by Luca Beltrame • 170 • updated 3.3 years ago by Biostar ♦♦ 20
2
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1
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972
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1
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Is there a way to know which variant caller has been used for calling variants in TCGA?
variant-calling tcga pipeline written 3.3 years ago by Jordan • 1.0k • updated 3.3 years ago by Charles Warden ♦ 4.8k
0
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1
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1.1k
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1
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Comparing Exomes -How to get ALL variants
exome variant-calling samtools written 3.4 years ago by bernatgel • 710
5
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0
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2.1k
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0
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News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
variant-calling gatk news written 3.4 years ago by William • 3.9k
2
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1
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2.2k
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1
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Multi-Sample Somatic Mutation Calling
variant-calling cancer somatic variant snp mutation written 3.4 years ago by jockbanan • 350 • updated 3.4 years ago by Dan Gaston ♦ 6.8k
1
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1
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1.9k
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1
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Parsing Vcf Files For Snps/Indels And Comparing Extracted Varaints Among Bacteria Spp.
variant-calling vcf snps written 3.5 years ago by robjohn7000 • 70 • updated 3.5 years ago by Ashutosh Pandey ♦ 11k
1
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2
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1.4k
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2
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Can We Compare The Total Reads Between Tumor And Its Wild Type Before Calling Variants To Check Globally Landscape Of Tumor/Wild Type/Ips?
reads variant-calling exome-sequencing written 3.5 years ago by vchris_ngs • 3.7k • updated 3.5 years ago by Alex Paciorkowski ♦ 3.3k
1
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1
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718
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1
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Pcr Free Variant Calls
variant-calling written 3.5 years ago by tommy.carstensen • 20 • updated 3.5 years ago by rbagnall • 1.1k
2
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1
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2.3k
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1
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Can We Call The Variants Using Haplotype Caller Or Unified Genotyper Without Dbsnp Vcf File?
variant-calling gatk exome-sequencing written 3.5 years ago by vchris_ngs • 3.7k • updated 3.5 years ago by Jorge Amigo ♦ 9.8k
2
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1
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1.7k
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1
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Rare Variants From Annotated Vcf File
variant-calling vcf annovar gatk written 3.5 years ago by Ron • 600 • updated 3.5 years ago by Charles Warden ♦ 4.8k
2
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2
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1.1k
views
2
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Vcf: How To Indicate Reference Allele Not Found?
vcf variant-calling written 3.7 years ago by Nick Stoler • 60 • updated 3.6 years ago by Adam • 940
4
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1
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1.4k
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1
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Cost Of Variant Calling A Human Wgs 30X Bam/Cram In The Cloud?
variant-calling cloud written 3.6 years ago by 14134125465346445 • 3.3k
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