Showing: variant-callingreset
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Remove variants that do not map to human genome
vcf variant-calling qc written 5 weeks ago by john.michel.rouhana0 • updated 5 weeks ago by Pierre Lindenbaum121k
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1
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182
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5 follow
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Genotyping diploid organisms from Sanger AB1 files
variant-calling sanger written 3 months ago by ognjen011170 • updated 3 months ago by trausch1.3k
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2
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5 follow
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Errors With Apt-Get When Attempting To Install Somaticsniper
variant-calling written 6.3 years ago by N10 • updated 5 months ago by Biostar ♦♦ 20
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5
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18 follow
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Combining Data Of Multiple Vcfs Into One.
vcf variant-calling written 6.0 years ago by Sheila300 • updated 5 months ago by Shicheng Guo7.5k
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5 follow
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6 follow
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Why a true variant is not getting called by Haplotypecaller.
variant-calling haplotypecaller next-gen written 3.3 years ago by AshishKS10 • updated 12 months ago by Biostar ♦♦ 20
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GATK: .ped vs .fam and missing values
variant-calling gatk snp written 15 months ago by rmf670 • updated 15 months ago by Kevin Blighe44k
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How To Phase Haplotypes In A Highly Polymorphic Genome
vcf variant-calling written 5.4 years ago by Adrian Pelin2.3k • updated 16 months ago by Biostar ♦♦ 20
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7 follow
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2
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686
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phasing SNPs with 3 siblings
variant-calling snp written 17 months ago by rmf670 • updated 17 months ago by Pierre Lindenbaum121k
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Identifying variants differing between control/treatment
variant-calling gatk indel snp written 17 months ago by rmf670 • updated 17 months ago by Pierre Lindenbaum121k
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1
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Genotype calls for a list of variable sites
variant-calling gatk genotype-calling written 20 months ago by Jautis270 • updated 20 months ago by Pierre Lindenbaum121k
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What does BAF mean?
variant-calling baf written 2.1 years ago by Brian Bushnell16k • updated 2.0 years ago by bernatgel1.9k
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Next-Generation Sequecing And Quantitative Traits Association Study
variant-calling ngs sequencing written 5.4 years ago by sorento730 • updated 2.6 years ago by Biostar ♦♦ 20
3
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1.6k
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Extract allele frequencies from VCF
variant-calling vcf crisp written 2.8 years ago by mufernando10 • updated 2.8 years ago by Noushin N550
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Coming with a result with many VCF files?
vcf variant-calling mutation-calling written 3.2 years ago by morovatunc400 • updated 3.0 years ago by Denise - Open Targets5.0k
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11 follow
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Variant Calling With Bcftools Call
variant-calling bcftools samtools mpileup written 5.2 years ago by tayebwajb90 • updated 3.4 years ago by vladimir.kovacevic60
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Sensitivity of variant calling
variant-calling next-gen sequencing written 4.0 years ago by szuszmok40 • updated 4.0 years ago by Len Trigg1.3k
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20k
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16 follow
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Difference Between Somatic And Germline Variant Calling?
variant-calling somatic gatk written 5.8 years ago by William4.4k • updated 4.2 years ago by Biostar ♦♦ 20
7
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2.9k
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5 follow
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When Is A Heterozygous Call Not Heterozygous?
exome variant-calling human written 5.4 years ago by Chris Cole680 • updated 4.3 years ago by Biostar ♦♦ 20
1
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NOT RESETTING NORMAL error using Varscan2
variant-calling somatic varscan2 snp written 4.5 years ago by Jordan1.1k • updated 4.5 years ago by Ying W3.9k
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43 follow
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