Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: variant-calling • reset
or   Classic search
<prev • 72 results • page 1 of 3 • next >
0
votes
1
answer
143
views
1
answer
Variant calling pacbio bacteria
variant-calling sniffles bacteria pacbio pbsv written 10 weeks ago by rmf • 730 • updated 4 weeks ago by wrowell • 0
1
vote
1
answer
144
views
1
answer
Calculating effective coverage/callable genome for variant calling from a bam file
genome variant-calling bam bigwig coverage written 11 weeks ago by Rubal • 250 • updated 11 weeks ago by Pierre Lindenbaum ♦ 123k
0
votes
1
answer
1.3k
views
1
answer
Calculate mean_GQ value from individual GQ values in a multi-sample VCF file
vcf gatk next-gen variant-calling sequencing written 2.6 years ago by aham • 40 • updated 3 months ago by jalinir • 0
4
votes
1
answer
194
views
1
answer
Remove variants that do not map to human genome
vcf variant-calling qc written 5 months ago by john.michel.rouhana • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 123k
2
votes
1
answer
270
views
5 follow
1
answer
Genotyping diploid organisms from Sanger AB1 files
variant-calling sanger written 7 months ago by ognjen011 • 170 • updated 7 months ago by trausch • 1.4k
3
votes
2
answers
1.9k
views
5 follow
2
answers
Errors With Apt-Get When Attempting To Install Somaticsniper
variant-calling written 6.6 years ago by N • 10 • updated 9 months ago by Biostar ♦♦ 20
20
votes
5
answers
20k
views
19 follow
5
answers
Combining Data Of Multiple Vcfs Into One.
vcf variant-calling written 6.4 years ago by Sheila • 300 • updated 9 months ago by Shicheng Guo • 7.8k
7
votes
1
answer
991
views
5 follow
1
answer
Why is 0/0 homozygous reference call in VCF useful information?
vcf variant-calling sequencing written 11 months ago by lillian.thistlethwaite • 10 • updated 10 months ago by Biostar ♦♦ 20
2
votes
0
answers
564
views
0
answers
why and how multi allele gets reported during variant calling in vcf
variant-calling vcf allele snp multi-allele written 12 months ago by genie66 • 20
0
votes
0
answers
1.6k
views
0
answers
Using GIAB exome data to test targetome variant-calling pipeline
variant-calling whole-exome targetome giab written 3.7 years ago by Floydian_slip • 130 • updated 13 months ago by RamRS ♦ 24k
6
votes
1
answer
1.4k
views
7 follow
1
answer
Keep Format and Individual fields when annotating VCF with VEP
vcf annotation vep variant-calling written 17 months ago by jsneaththompson • 80 • updated 13 months ago by MasMarius • 10
9
votes
1
answer
2.0k
views
1
answer
Why a true variant is not getting called by Haplotypecaller.
variant-calling haplotypecaller next-gen written 3.6 years ago by AshishKS • 10 • updated 16 months ago by Biostar ♦♦ 20
1
vote
0
answers
1.1k
views
0
answers
What do the freebayes parameters --pooled-continuous/--pooled-discrete mean?
variant-calling next-gen freebayes snp written 16 months ago by markd • 20
1
vote
1
answer
596
views
1
answer
GATK: .ped vs .fam and missing values
variant-calling gatk snp written 18 months ago by rmf • 730 • updated 18 months ago by Kevin Blighe ♦ 50k
4
votes
1
answer
2.0k
views
1
answer
How To Phase Haplotypes In A Highly Polymorphic Genome
vcf variant-calling written 5.7 years ago by Adrian Pelin • 2.3k • updated 20 months ago by Biostar ♦♦ 20
6
votes
1
answer
2.4k
views
7 follow
1
answer
Samtools: merge and mpileup vs mpileup alone for variant-calling with multiple BAM
variant-calling merge samtools mpileup snp written 2.7 years ago by Rob • 100 • updated 20 months ago by Biostar ♦♦ 20
1
vote
2
answers
812
views
2
answers
Regenotype vcf using some samples as reference
vcf variant-calling snp written 21 months ago by rmf • 730
0
votes
1
answer
685
views
1
answer
phasing SNPs with 3 siblings
variant-calling snp written 21 months ago by rmf • 730 • updated 21 months ago by Pierre Lindenbaum ♦ 123k
2
votes
1
answer
634
views
1
answer
Identifying variants differing between control/treatment
variant-calling gatk indel snp written 21 months ago by rmf • 730 • updated 21 months ago by Pierre Lindenbaum ♦ 123k
0
votes
1
answer
512
views
1
answer
Genotype calls for a list of variable sites
variant-calling gatk genotype-calling written 2.0 years ago by Jautis • 280 • updated 2.0 years ago by Pierre Lindenbaum ♦ 123k
7
votes
1
answer
7.3k
views
1
answer
What does BAF mean?
variant-calling baf written 2.4 years ago by Brian Bushnell ♦ 16k • updated 2.4 years ago by bernatgel • 2.1k
0
votes
0
answers
1.0k
views
0
answers
complex indel precludes detection of overlapping SNPs
variant-calling pooled sample freebayes written 2.6 years ago by harold.smith.tarheel • 4.4k
2
votes
0
answers
1.6k
views
0
answers
Next-Generation Sequecing And Quantitative Traits Association Study
variant-calling ngs sequencing written 5.7 years ago by sorento7 • 30 • updated 2.9 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.8k
views
1
answer
Extract allele frequencies from VCF
variant-calling vcf crisp written 3.1 years ago by mufernando • 10 • updated 3.1 years ago by Noushin N • 560
1
vote
1
answer
842
views
1
answer
Coming with a result with many VCF files?
vcf variant-calling mutation-calling written 3.5 years ago by morovatunc • 400 • updated 3.4 years ago by Denise - Open Targets • 5.0k
4
votes
6
answers
14k
views
11 follow
6
answers
Variant Calling With Bcftools Call
variant-calling bcftools samtools mpileup written 5.6 years ago by tayebwajb • 90 • updated 3.7 years ago by vladimir.kovacevic • 60
2
votes
1
answer
1.6k
views
1
answer
Sensitivity of variant calling
variant-calling next-gen sequencing written 4.4 years ago by szuszmok • 40 • updated 4.4 years ago by Len Trigg • 1.3k
46
votes
2
answers
20k
views
16 follow
2
answers
Difference Between Somatic And Germline Variant Calling?
variant-calling somatic gatk written 6.1 years ago by William • 4.5k • updated 4.5 years ago by Biostar ♦♦ 20
7
votes
1
answer
3.1k
views
5 follow
1
answer
When Is A Heterozygous Call Not Heterozygous?
exome variant-calling human written 5.7 years ago by Chris Cole • 720 • updated 4.6 years ago by Biostar ♦♦ 20
1
vote
1
answer
2.8k
views
1
answer
NOT RESETTING NORMAL error using Varscan2
variant-calling somatic varscan2 snp written 4.9 years ago by Jordan • 1.1k • updated 4.9 years ago by Ying W • 3.9k
<prev • 72 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • Hong Kong, just now
  • Germany, just now
  • Brazil, 1 minute ago
  • Chennai, India, 6 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1740 users visited in the last hour