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<prev • 294 results • page 1 of 10 • next >
9
votes
0
answers
127
views
0
answers
why there is 0/0 genotyp in VCF file?
vcf gatk variant written 5 days ago by star • 190
0
votes
0
answers
110
views
0
answers
Understanding the output of pileup2snp
variant samtools snp varscan written 17 days ago by e.rempel • 770
12
votes
1
answer
2.4k
views
7 follow
1
answer
Zygosity Of A Copy Number Variant
genome variant cnv written 7.6 years ago by Pascal • 1.5k • updated 4 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
139
views
0
answers
GATK SplitNCigarReads Error
gatk variant rna-seq written 4 weeks ago by BAGeno • 140
1
vote
2
answers
120
views
2
answers
uniprot variant classification DB retireve
variant vep uniprot ensembl written 6 weeks ago by cocchi.e89 • 30 • updated 6 weeks ago by Elisabeth Gasteiger • 1.6k
3
votes
1
answer
154
views
1
answer
how can a DELETION be not a NULL variant?
exome indel deletion variant acmg written 6 weeks ago by cocchi.e89 • 30 • updated 6 weeks ago by Jean-Karim Heriche ♦ 20k
4
votes
0
answers
128
views
0
answers
Why do I have more than 5000 variants when I used a 5K snp array?
vcf alignment variant plink snp written 7 weeks ago by rgooley • 0 • updated 7 weeks ago by genomax ♦ 70k
3
votes
0
answers
216
views
0
answers
Question about annotation for duplication using annovar
annovar next-gen variant written 10 weeks ago by hns • 150 • updated 9 weeks ago by hns0410 • 10
13
votes
2
answers
1.5k
views
8 follow
2
answers
Is SNPeff still the standard for variant effect prediction?
exome annotation snpeff variant written 2.1 years ago by Lauren • 50 • updated 10 weeks ago by Shicheng Guo • 7.7k
0
votes
0
answers
165
views
0
answers
VARIANT effect retrieving
indel variant effect snv written 4 months ago by cocchi.e89 • 30 • updated 12 weeks ago by Biostar ♦♦ 20
2
votes
2
answers
476
views
2
answers
Read position bias (RPB and PV4) fields from samtools mpileup: how to get them?
rpb variant mpileup snp call written 15 months ago by Macspider • 2.8k • updated 3 months ago by al.bodrug • 50
3
votes
0
answers
2.3k
views
0
answers
Reducing False Positive Indel Calls From Pindel
indel somatic variant pindel written 7.7 years ago by Rlong • 340 • updated 3 months ago by isaacpei • 0
1
vote
1
answer
154
views
1
answer
Variants in Exon or Intron
exon variant intron written 3 months ago by zakkaknadine • 10 • updated 3 months ago by shawn.w.foley • 840
0
votes
0
answers
218
views
0
answers
Is there any inheritance information source other than OMIM and free for commercial use?
gene dominant database variant recessive written 3 months ago by magnolia • 0
0
votes
1
answer
185
views
1
answer
hom/het definition from Allelic Depth counts
ad count variant het hom written 3 months ago by cocchi.e89 • 30 • updated 3 months ago by Vitis • 2.2k
0
votes
1
answer
759
views
1
answer
GATK Panel Of Normals (PoN)
gatk beta calling variant written 9 months ago by b.d237 • 140 • updated 3 months ago by esraesmeray1990 • 10
0
votes
1
answer
2.2k
views
1
answer
Can Some One Explain These Gatk Unifiedgenotyper Commands And Difference In Terms Of Output Also
gatk ngs variant written 5.9 years ago by always_learning • 980 • updated 4 months ago by Biostar ♦♦ 20
7
votes
1
answer
393
views
1
answer
why A/T or C/G are ambiguous SNPs?
genome variant snp strand written 4 months ago by seta • 1.2k • updated 4 months ago by Emily_Ensembl ♦ 18k
0
votes
0
answers
130
views
0
answers
Variant Calling between Microbial Populations
populations snp calling variant samtools written 4 months ago by gabriel.jabud • 20
4
votes
1
answer
240
views
5 follow
1
answer
How to check the allele strand of variants?
variant written 4 months ago by seta • 1.2k • updated 4 months ago by Emily_Ensembl ♦ 18k
0
votes
0
answers
1.8k
views
0
answers
Strange variant call it show a indel but looks like a SNP
indel snp variant ion caller written 4.9 years ago by cristianrohr768 • 30 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
230
views
1
answer
extracting snps from multiple vcf file but present in proportion of samples
vcf variant snp written 4 months ago by ankit hinsu • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 122k
1
vote
1
answer
259
views
1
answer
table to convert RS names to CHR-POS-REF-ALT (es GnomAD)
rs nomeclature variant gnomad names written 4 months ago by cocchi.e89 • 30
5
votes
3
answers
395
views
6 follow
3
answers
Storing Varaint data from VCF
techstack ngs variant database written 5 months ago by mvkotekar • 20 • updated 4 months ago by floris.barthel • 40
0
votes
0
answers
217
views
0
answers
Bcftools Call method not detecting single nucleotide deletions?
variant calling bcftools samtools variant written 4 months ago by kennyworkman • 0
5
votes
1
answer
247
views
1
answer
New Variants Effect Prediction Tools
indel variant effect snv written 4 months ago by cocchi.e89 • 30 • updated 4 months ago by Emily_Ensembl ♦ 18k
0
votes
0
answers
169
views
0
answers
Variant Effect Prediction Databases
variant database prediction effect written 5 months ago by cocchi.e89 • 30
0
votes
0
answers
163
views
0
answers
all non-ALT position in a VCF are non-variants?
vcf altered alt variant written 5 months ago by cocchi.e89 • 30 • updated 5 months ago by Pierre Lindenbaum ♦ 122k
3
votes
1
answer
298
views
1
answer
bash, how can I distinguish synonymous from non-synonymous variants in VCF files?
vcf R variant written 5 months ago by Davide Chicco • 90 • updated 5 months ago by karl.stamm ♦ 3.5k
3
votes
1
answer
1.2k
views
1
answer
Is Re-Sequencing Of Trait-Associated-Regions Required To Capture The Causal Variant?
variant snp written 6.4 years ago by kumar.vinod81 • 280 • updated 5 months ago by Biostar ♦♦ 20
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