Showing: variantreset
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In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 9 months ago by Chen590 • updated 19 days ago by Biostar ♦♦ 20
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(Sanity check) Too many SNPs?
filter next-gen variant written 20 days ago by rightmirem40 • updated 20 days ago by pfs140
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Meaning of 'tag' in the context of variants
interpretation variant written 3 months ago by andrewl10 • updated 8 weeks ago by Dan Gaston6.9k
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retrospective trio analysis from WGS SNPs
trio lineage pedigree variant snp written 10 weeks ago by harold.smith.tarheel3.9k • updated 10 weeks ago by andrew.j.skelton734.1k
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determine loss- or gain-of-function of specific mutation
mutation variant snv written 3 months ago by igor4.7k • updated 3 months ago by mforde841000
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UTR size range for 5' UTR & 3' UTR variants
gene sequence biology variant written 3 months ago by anu014120 • updated 3 months ago by Emily_Ensembl13k
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Is SNPeff still the standard for variant effect prediction?
exome annotation snpeff variant written 4 months ago by Lauren20 • updated 4 months ago by Samuel Brady230
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Selecting variants from a VCF file
vcf next-gen variant snp written 3.4 years ago by matt.christmas850 • updated 4 months ago by panatheod0
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 7 months ago by Macspider1.6k • updated 5 months ago by Biostar ♦♦ 20
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Are these false somatic variants? Visual inspection with IGV
somatic variant mutations snp igv written 6 months ago by andreslanzos50 • updated 6 months ago by d-cameron880
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Any comparisons of read length for variant calling?
assembly next-gen variant snp gatk written 7 months ago by Sukhdeep Singh9.1k • updated 7 months ago by Brian Bushnell14k
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Missing Snp Variants In Two 10Mb Blocks On Chr1 And Chr9 In 1000 Genome Data?
1000genomes variant snp written 3.7 years ago by Zhenyu160 • updated 8 months ago by Biostar ♦♦ 20
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VCF file period symbol in the genotype
vcf variant snp written 8 months ago by bharata1803230 • updated 8 months ago by finswimmer600
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Convert amino acid and nucleotide coding changes between notation formats
variant written 8 months ago by steve1.1k • updated 8 months ago by Petr Ponomarenko2.4k
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