Showing: variantreset
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 11 weeks ago by Macspider1.2k • updated 3 days ago by Biostar ♦♦ 20
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7 follow
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Are these false somatic variants? Visual inspection with IGV
somatic variant mutations snp igv written 4 weeks ago by andreslanzos50 • updated 4 weeks ago by d-cameron740
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Any comparisons of read length for variant calling?
assembly next-gen variant snp gatk written 9 weeks ago by Sukhdeep Singh8.8k • updated 9 weeks ago by Brian Bushnell12k
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Missing Snp Variants In Two 10Mb Blocks On Chr1 And Chr9 In 1000 Genome Data?
1000genomes variant snp written 3.3 years ago by Zhenyu150 • updated 3 months ago by Biostar ♦♦ 20
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VCF file period symbol in the genotype
vcf variant snp written 3 months ago by bharata1803220 • updated 3 months ago by finswimmer77200
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Convert amino acid and nucleotide coding changes between notation formats
variant written 3 months ago by steve760 • updated 3 months ago by Petr Ponomarenko2.4k
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In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 4 months ago by Chen480 • updated 4 months ago by WouterDeCoster19k
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Determine sex from vcf file (or sequencing data)
vcf variant genotyping written 13 months ago by kulvait160 • updated 4 months ago by Biostar ♦♦ 20
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Why annotation doesn't respect VCF field schema ?
vcf annotation format variant specification written 4 months ago by sacha770 • updated 4 months ago by EnsemblWill500
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Addin gene information to VCF file
annotation next-gen variant snp written 2.6 years ago by ScienceBuff30 • updated 5 months ago by duke10
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Extract nucleotide read quartet from vcf file
vcf variant snp written 9 months ago by berge201570 • updated 5 months ago by Biostar ♦♦ 20
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SVM based Filtering For NGS data
svm next-gen variant filtering written 5 months ago by manojkumarbioinfo20 • updated 5 months ago by Vivek1.7k
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Best way to compare two samples in a VCF file
vcf comparison variant genotype snp written 6 months ago by Macspider1.2k • updated 6 months ago by novice660
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New Fasta Sequence From Reference Fasta And Variant Calls File?
vcf fasta consensus variant written 6.3 years ago by Gaffa490 • updated 7 months ago by DragonDNA30
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Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 7 months ago by Paul600 • updated 7 months ago by Zaag600
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drug response variant datasets
snp variant drug response biobase written 9 months ago by arronslacey210 • updated 7 months ago by dyollluap180
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Identifying De Novo Variants In Trio Data
gatk differential-expression variant written 5.0 years ago by Vivek1.7k • updated 8 months ago by daniel30
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