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<prev • 264 results • page 1 of 9 • next >
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VCF file period symbol in the genotype
vcf variant snp written 18 months ago by bharata1803 • 290 • updated 20 days ago by RamRS ♦ 17k
3
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1
answer
155
views
1
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How to export the SNPs between whole genome alignments using the command line?
sequence-alignment alignment variant mauve snp written 4 weeks ago by Paul • 60 • updated 4 weeks ago by h.mon ♦ 19k
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2
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2.7k
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2
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Check if REF allele is minor allele in any variant
ref variant minor allele written 3.9 years ago by RamRS ♦ 17k • updated 4 weeks ago by Shicheng Guo • 6.5k
0
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1
answer
117
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1
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What's the difference between the /rest/variant and /rest/variant/variant requests to the Exac API?
api variant exac snp written 5 weeks ago by kynnjo • 20 • updated 5 weeks ago by finswimmer ♦ 5.4k
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112
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0
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Searching for mutation
gene R mutation variant snp written 6 weeks ago by nesrine.trabelsi.n • 0
6
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1
answer
452
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1
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(Sanity check) Too many SNPs?
filter next-gen variant written 10 months ago by rightmirem • 50 • updated 10 weeks ago by Biostar ♦♦ 20
16
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4
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344
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8 follow
4
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Forum: Create a File format to store Variant
hgvs forum json variant standard written 12 weeks ago by sacha • 1.5k • updated 12 weeks ago by d-cameron • 1.9k
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0
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143
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0
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Why VarScan always get more somatic variants than other caller
varscan variant written 3 months ago by CY • 190
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1
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218
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1
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How to know if a variant is sequencing or mapping artifact?
vcf variant freebayes written 3 months ago by kspata • 30 • updated 3 months ago by finswimmer ♦ 5.4k
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229
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SNPEff not showing SNP
annotation forum snpeff variant snp written 4 months ago by sanjay.bpkihs • 0 • updated 3 months ago by cpad0112 • 9.0k
3
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1
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191
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5 follow
1
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Get variant position knowing the gene name, base change, and NM#
gene genome coordinates variant written 3 months ago by bisansamara • 10 • updated 3 months ago by Tao • 240
2
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1
answer
170
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1
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How does variant callers deal with N in the reference sequence?
genome reference N variant call written 3 months ago by pyjiang2 • 30 • updated 3 months ago by JC ♦ 6.8k
2
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1
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165
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1
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Read position bias (RPB and PV4) fields from samtools mpileup: how to get them?
rpb variant mpileup snp call written 4 months ago by Macspider • 2.5k • updated 4 months ago by al.bodrug • 50
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159
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Variant enrichment quantification
enrichment variant clone statistics written 4 months ago by NaskoMak • 0
0
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0
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141
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0
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Find polymorphic/variant sequences of a given protein sequence.
variant sequence polymorphism written 4 months ago by db4 • 0
0
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0
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116
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0
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Variant distance bias (VDB) in VCF format: how to compute properly?
vcf vdb variant distance bias written 4 months ago by Macspider • 2.5k
0
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1
answer
708
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1
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Variant calling on single-cell data
single-cell variant snp written 8 months ago by vinvan • 10 • updated 4 months ago by oneillkza • 60
3
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1
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197
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1
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Inconsistency of allele depth in BAM and VCF
vcf allele depth variant bam written 4 months ago by CY • 190 • updated 4 months ago by Noushin N • 530
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0
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143
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0
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SNP/Mbp rate weird, any known bias/artifact?
mbp calling variant snp bias written 5 months ago by Macspider • 2.5k
2
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1
answer
390
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1
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Problems left-normalizing variants with bctools, GATK, combining with ANNOVAR annotations
annotation variant written 5 months ago by steve • 1.7k
0
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2
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248
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2
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Identify the nearest common SNP to a given rare variant
bioinformatics analysis variant snv snp written 6 months ago by bisansamara • 10
5
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1
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1.7k
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1
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How to visualize large VCF files
vcf variant calling snps variant snp written 2.3 years ago by bioinforesearchquestions • 160 • updated 6 months ago by Biostar ♦♦ 20
0
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0
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200
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Joining Clinvar with variant data using sql
23andme variant clinvar written 6 months ago by iCode • 0
8
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1
answer
665
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6 follow
1
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Forum: SNP calling in 2018
gatk forum variant snp written 6 months ago by Picasa • 380 • updated 6 months ago by WouterDeCoster ♦ 32k
0
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0
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471
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[ti_index_core] the chromosome blocks not continuous at line xxxx, is the file sorted? [pos 1]
vcf variant index written 6 months ago by shubhra.bhattacharya • 40
3
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3
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5 follow
3
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How To Get Consensus Sequence Including Variant From A Vcf File For Several Individuals...?
vcf consensus calling variant gatk written 6.0 years ago by Bioch'Ti • 1000 • updated 7 months ago by boczniak767 • 600
0
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0
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170
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Annotate variants based on site mutability
annotation cpg variant mutability written 7 months ago by adamlaurajacob • 0
0
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1
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1.6k
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1
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freebayes haplotype calling (phased variants)
freebayes haplotype phase variant phased written 2.5 years ago by mark.rose • 20 • updated 7 months ago by gkuffel22 • 50
14
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1
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3.4k
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8 follow
1
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Publicly Available Tumor/Normal Illumina Data For Evaluation Of Somatic Variant Callers
somatic variant written 6.0 years ago by Malachi Griffith ♦ 16k • updated 9 months ago by yhrytsenko • 0
0
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368
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how can i get acertainment sample size in dpSNP for all variants of some 15000 genes
gene dbsnp variant written 10 months ago by jananiinfo14 • 0 • updated 9 months ago by Biostar ♦♦ 20
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