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<prev • 230 results • page 1 of 8 • next >
4
votes
1
answer
154
views
1
answer
UTR size range for 5' UTR & 3' UTR variants
gene sequence biology variant written 17 hours ago by anupriyaverma1408 • 100 • updated 16 hours ago by Emily_Ensembl ♦ 12k
0
votes
0
answers
104
views
0
answers
Meaning of 'tag' in the context of variants
interpretation variant written 6 days ago by andrewl • 10
14
votes
4
answers
1.1k
views
11 follow
4
answers
Best way to compare two samples in a VCF file
vcf comparison variant genotype snp written 8 months ago by Macspider • 1.2k
4
votes
1
answer
159
views
1
answer
Is SNPeff still the standard for variant effect prediction?
exome annotation snpeff variant written 28 days ago by Lauren M. • 10 • updated 28 days ago by Samuel Brady • 230
0
votes
0
answers
144
views
0
answers
Galaxy VarScan SNP size and stderr
varscan galaxy variant bam written 5 weeks ago by louis.gil007 • 0
2
votes
2
answers
2.2k
views
2
answers
Selecting variants from a VCF file
vcf next-gen variant snp written 3.1 years ago by matt.christmas85 • 0 • updated 7 weeks ago by panatheod • 0
1
vote
1
answer
239
views
1
answer
VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 4 months ago by Macspider • 1.2k • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
111
views
0
answers
Finding two strains of a genome having SNPs/SNVs in their repeat regions
genome repeat variant snp sequencing written 10 weeks ago by smho • 40
24
votes
1
answer
338
views
7 follow
1
answer
Are these false somatic variants? Visual inspection with IGV
somatic variant mutations snp igv written 12 weeks ago by andreslanzos • 50 • updated 12 weeks ago by d-cameron • 770
0
votes
1
answer
139
views
1
answer
I need some sets of pathogenic variants related to any mendelian disorder.
prioritization variant written 3 months ago by sktbanerjee1 • 20 • updated 3 months ago by WouterDeCoster ♦ 20k
7
votes
4
answers
289
views
6 follow
4
answers
Does allele refer to the entire gene sequence or one position of the gene sequence?
alleles snps variant written 3 months ago by ngsbioinformaticslearner • 0 • updated 3 months ago by i.sudbery • 1.4k
3
votes
2
answers
246
views
2
answers
Any comparisons of read length for variant calling?
assembly next-gen variant snp gatk written 3 months ago by Sukhdeep Singh ♦ 9.0k • updated 3 months ago by Brian Bushnell ♦ 13k
3
votes
1
answer
197
views
1
answer
Variant callers reporting different read depth on same alignment
variant calling gatk freebayes variant annotation written 4 months ago by Lauren M. • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 96k
0
votes
1
answer
186
views
1
answer
Where to find the file Variant.Alternate designations on the ClinVar FTP server?
gene clinvar variant written 4 months ago by esproff • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 96k
0
votes
1
answer
887
views
1
answer
Missing Snp Variants In Two 10Mb Blocks On Chr1 And Chr9 In 1000 Genome Data?
1000genomes variant snp written 3.4 years ago by Zhenyu • 150 • updated 5 months ago by Biostar ♦♦ 20
0
votes
1
answer
212
views
1
answer
VCF file period symbol in the genotype
vcf variant snp written 5 months ago by bharata1803 • 230 • updated 5 months ago by finswimmer • 360
0
votes
0
answers
159
views
0
answers
Getting SNPs that are the complementary base of the reference
calling allele variant snp alternative written 5 months ago by Macspider • 1.2k
0
votes
1
answer
248
views
1
answer
Convert amino acid and nucleotide coding changes between notation formats
variant written 5 months ago by steve • 790 • updated 5 months ago by Petr Ponomarenko • 2.4k
2
votes
2
answers
255
views
2
answers
In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 5 months ago by Chen • 510 • updated 5 months ago by WouterDeCoster ♦ 20k
15
votes
4
answers
1.6k
views
4
answers
Determine sex from vcf file (or sequencing data)
vcf variant genotyping written 15 months ago by kulvait • 200 • updated 5 months ago by Biostar ♦♦ 20
6
votes
2
answers
222
views
2
answers
Why annotation doesn't respect VCF field schema ?
vcf annotation format variant specification written 6 months ago by sacha • 770 • updated 6 months ago by EnsemblWill • 540
0
votes
0
answers
279
views
0
answers
Is Pindel slow for everyone, or should I review my command?
variant pindel detection program structural written 7 months ago by Macspider • 1.2k
0
votes
0
answers
266
views
0
answers
Quality, MQ0F, other parameters for proper VCF filtering
genome vcf alignment variant snp written 7 months ago by Macspider • 1.2k
2
votes
0
answers
234
views
0
answers
Tool: wtools : An API REST for variant tools
varianttools variant filtering snp annotation written 7 months ago by sacha • 770
3
votes
5
answers
4.5k
views
5
answers
Addin gene information to VCF file
annotation next-gen variant snp written 2.7 years ago by ScienceBuff • 30 • updated 7 months ago by duke • 10
2
votes
1
answer
388
views
1
answer
Extract nucleotide read quartet from vcf file
vcf variant snp written 10 months ago by berge2015 • 70 • updated 7 months ago by Biostar ♦♦ 20
0
votes
1
answer
317
views
1
answer
SVM based Filtering For NGS data
svm next-gen variant filtering written 7 months ago by manojkumarbioinfo • 20 • updated 7 months ago by Vivek • 1.9k
2
votes
1
answer
271
views
1
answer
How to output all variant alleles at a given site, regardless of quality
variant snp mpileup written 7 months ago by correlationmatrix • 20 • updated 7 months ago by Brian Bushnell ♦ 13k
51
votes
6
answers
20k
views
24 follow
6
answers
New Fasta Sequence From Reference Fasta And Variant Calls File?
vcf fasta consensus variant written 6.4 years ago by Gaffa • 490 • updated 8 months ago by DragonDNA • 40
0
votes
1
answer
386
views
1
answer
varscan misses alternate variant alleles
variant freebayes insertion mpileup deletion written 8 months ago by mark.rose • 10
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