Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 331 results • page 1 of 12 • next >
23
votes
0
answers
1.1k
views
19 follow
0
answers
Tutorial: Resources / databases for clinical interpretation of cancer variants
cancer interpretation tutorial variant annotation clinical written 12 months ago by Malachi Griffith ♦ 18k
2
votes
0
answers
91
views
0
answers
Convert variant coordinates from one genome build to the other
variant sequence genome_build written 26 days ago by banerjeeshayantan • 170
3
votes
1
answer
162
views
1
answer
Where can I find Annotation info for VCF files?
gene alignment next-gen variant sequencing written 6 weeks ago by akshaykum684 • 0
2
votes
0
answers
146
views
0
answers
VCF file analysis - Tutorial resources
alignment next-gen sequence variant sequencing written 6 weeks ago by akshaykum684 • 0
4
votes
0
answers
104
views
0
answers
Different VCF file extensions - VCF 101
genome gene variant snp sequencing written 6 weeks ago by akshaykum684 • 0
1
vote
0
answers
121
views
0
answers
How to allele frequency for each variant in VCF file
vcf genome variant gene perl written 8 weeks ago by Nyksubuz • 0
0
votes
0
answers
145
views
0
answers
How to calculate maf for a variant for case and control
maf genetics variant written 9 weeks ago by MAPK • 1.6k
1
vote
0
answers
176
views
0
answers
how to find snp changes between pairs of samples that have genomes sequenced
genome variant written 11 weeks ago by bryanchang2016 • 20
0
votes
0
answers
133
views
0
answers
difference between bcftools mpileup and bcftools call
bcftools variant call mpileup written 11 weeks ago by sami • 20
0
votes
0
answers
97
views
0
answers
On the conventions for annotating the position of insertion and deletion variants
genome indels variant genomics genotyping written 3 months ago by kynnjo • 40
0
votes
1
answer
112
views
1
answer
Read showing Insertion of 41 bases when aligned with BWA
bowtie2 variant bwa written 3 months ago by kspata • 70 • updated 3 months ago by swbarnes2 ♦ 8.8k
0
votes
0
answers
254
views
0
answers
How to merge 2 VCF files that was previously extracted from same file
software error vcf variant snp gatk written 3 months ago by phongphak.06 • 10
0
votes
0
answers
111
views
0
answers
ANNOVAR issue annotating vcf
annover variant gnomad written 3 months ago by brismiller • 40
1
vote
0
answers
127
views
0
answers
bcftools filtering on INFO fields
vcf bcftools variant variants written 3 months ago by Stephane Plaisance • 420
0
votes
0
answers
96
views
0
answers
Split phased haplotypes of same person coming from same parents
indel haplotype variant snp written 4 months ago by Parham • 1.5k
1
vote
0
answers
142
views
0
answers
Statistical meaning of top hit and top 10
gene score variant written 4 months ago by LimMo • 0
0
votes
0
answers
132
views
0
answers
Varscan2 somatic output annotation with snpEff -cancer option
annotation snpeff varscan2 variant sequencing written 4 months ago by jobrien • 0
1
vote
1
answer
337
views
1
answer
STAR error (segmentation fault) in Aligning reads
reads ngs alignment variant star written 10 months ago by spriyansh29 • 30
1
vote
1
answer
198
views
1
answer
determine exon number from variant genomic coordinates
exome exon variant coordinates human written 5 months ago by cocchi.e89 • 110 • updated 5 months ago by rbagnall • 1.7k
0
votes
1
answer
149
views
1
answer
VEP MutationAssessor output
vep mutationassessor variant human written 6 months ago by cocchi.e89 • 110 • updated 6 months ago by Ben_Ensembl • 1.6k
0
votes
0
answers
116
views
0
answers
create an haplotype
haplotype variant snp written 6 months ago by marmar • 0
0
votes
1
answer
2.6k
views
1
answer
freebayes haplotype calling (phased variants)
freebayes haplotype phase variant phased written 4.6 years ago by mark.rose • 40 • updated 6 months ago by mikemc • 10
8
votes
3
answers
3.7k
views
6 follow
3
answers
List Of Dbsnp Variants Where Reference Genome Has Minor Allele
exome reference dbsnp variant written 8.9 years ago by Ana Rodrigues Grant • 30 • updated 6 months ago by Biostar ♦♦ 20
1
vote
1
answer
158
views
1
answer
Extracting variant reads and reference reads quickly from mapped files
dna-seq variant written 6 months ago by graeme.thorn • 50
0
votes
1
answer
197
views
1
answer
Pipes within VCF INFO Column
vcf exome-sequencing next-gen variant snp written 7 months ago by basay3 • 0 • updated 7 months ago by genomax ♦ 91k
8
votes
3
answers
3.6k
views
3
answers
Why There Are A Lot Of Mq0 Reads In Some Particular Regions?
calling variant written 7.8 years ago by lyz10302012 • 360 • updated 7 months ago by Biostar ♦♦ 20
1
vote
1
answer
208
views
1
answer
Sequence Conflict in Uniprot
variant mutation gwas genomics sequencing written 7 months ago by Negin • 0 • updated 7 months ago by JC ♦ 11k
0
votes
0
answers
207
views
0
answers
callVariants problem with hg38 aligned bam: DEBUG - There are 0 filtered variant candidates in reads which overlap the region
variant platypus snp written 7 months ago by Paso • 10
4
votes
1
answer
3.9k
views
1
answer
Tool: CRAVAT: a web tool to annotate and analyze cancer variants
annotation sequencing variant tool cancer written 5.0 years ago by Collin • 850 • updated 7 months ago by slcrick • 240
0
votes
0
answers
155
views
0
answers
Using SnpEff on Galaxy
vcf assembly ngs variant snp written 8 months ago by pmenon0998 • 0
<prev • 331 results • page 1 of 12 • next >
Recent Votes
Recent Locations • All »
  • India, just now
  • Brazil, 4 minutes ago
  • Australia, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1384 users visited in the last hour