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<prev • 267 results • page 1 of 9 • next >
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vcf-subset error: "Wrong number of fields" in vcf file
vcf vcf-subset variant vcftools 1000 genomes written 3.4 years ago by Lylthera • 0 • updated 4 weeks ago by zx8754 ♦ 6.2k
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2
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2.2k
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7 follow
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Variant Annotation Integrator From Ucsc
exome variant written 5.5 years ago by ewre • 210 • updated 4 weeks ago by slcrick • 80
18
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5
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9 follow
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Forum: Create a File format to store Variant
hgvs forum json variant standard written 6 months ago by sacha • 1.6k • updated 6 weeks ago by bdolin • 90
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1
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182
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1
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GATK Panel Of Normals (PoN)
gatk beta calling variant written 11 weeks ago by b.d237 • 40
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1
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165
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1
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ANNOVAR annotate frameshift
annovar mutation variant exonic written 3 months ago by sugus • 30
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195
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Should I replace heterozygous variants to make a consensus
consensus genome heterozygous variant assembly written 3 months ago by deepti1rao • 20
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VCF file period symbol in the genotype
vcf variant snp written 22 months ago by bharata1803 • 390 • updated 4 months ago by RamRS ♦ 20k
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1
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241
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1
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How to export the SNPs between whole genome alignments using the command line?
sequence-alignment alignment variant mauve snp written 4 months ago by Paul • 70 • updated 4 months ago by h.mon ♦ 22k
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3.0k
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Check if REF allele is minor allele in any variant
ref variant minor allele written 4.2 years ago by RamRS ♦ 20k • updated 4 months ago by Shicheng Guo • 7.3k
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1
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211
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1
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What's the difference between the /rest/variant and /rest/variant/variant requests to the Exac API?
api variant exac snp written 5 months ago by kynnjo • 20 • updated 5 months ago by finswimmer ♦ 8.9k
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183
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Searching for mutation
gene R mutation variant snp written 5 months ago by nesrine.trabelsi.n • 0
6
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1
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534
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1
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(Sanity check) Too many SNPs?
filter next-gen variant written 14 months ago by rightmirem • 50 • updated 6 months ago by Biostar ♦♦ 20
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219
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Why VarScan always get more somatic variants than other caller
varscan variant written 6 months ago by CY • 270
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361
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How to know if a variant is sequencing or mapping artifact?
vcf variant freebayes written 6 months ago by kspata • 40 • updated 6 months ago by finswimmer ♦ 8.9k
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SNPEff not showing SNP
annotation forum snpeff variant snp written 8 months ago by sanjay.bpkihs • 0 • updated 6 months ago by cpad0112 ♦ 10k
3
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1
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273
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5 follow
1
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Get variant position knowing the gene name, base change, and NM#
gene genome coordinates variant written 7 months ago by bisansamara • 10 • updated 7 months ago by Tao • 260
2
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1
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223
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1
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How does variant callers deal with N in the reference sequence?
genome reference N variant call written 7 months ago by pyjiang2 • 30 • updated 7 months ago by JC ♦ 7.1k
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1
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261
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1
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Read position bias (RPB and PV4) fields from samtools mpileup: how to get them?
rpb variant mpileup snp call written 7 months ago by Macspider • 2.7k • updated 7 months ago by al.bodrug • 50
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233
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Variant enrichment quantification
enrichment variant clone statistics written 8 months ago by NaskoMak • 0
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190
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Find polymorphic/variant sequences of a given protein sequence.
variant sequence polymorphism written 8 months ago by db4 • 0
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178
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Variant distance bias (VDB) in VCF format: how to compute properly?
vcf vdb variant distance bias written 8 months ago by Macspider • 2.7k
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Variant calling on single-cell data
single-cell variant snp written 12 months ago by vinvan • 40 • updated 8 months ago by oneillkza • 70
3
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1
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280
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1
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Inconsistency of allele depth in BAM and VCF
vcf allele depth variant bam written 8 months ago by CY • 270 • updated 8 months ago by Noushin N • 530
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210
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SNP/Mbp rate weird, any known bias/artifact?
mbp calling variant snp bias written 9 months ago by Macspider • 2.7k
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1
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532
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1
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Problems left-normalizing variants with bctools, GATK, combining with ANNOVAR annotations
annotation variant written 9 months ago by steve • 1.9k
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2
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329
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Identify the nearest common SNP to a given rare variant
bioinformatics analysis variant snv snp written 9 months ago by bisansamara • 10
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How to visualize large VCF files
vcf variant calling snps variant snp written 2.7 years ago by bioinforesearchquestions • 190 • updated 9 months ago by Biostar ♦♦ 20
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304
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Joining Clinvar with variant data using sql
23andme variant clinvar written 10 months ago by iCode • 0
8
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1
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931
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6 follow
1
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Forum: SNP calling in 2018
gatk forum variant snp written 10 months ago by Picasa • 390 • updated 10 months ago by WouterDeCoster ♦ 35k
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700
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[ti_index_core] the chromosome blocks not continuous at line xxxx, is the file sorted? [pos 1]
vcf variant index written 10 months ago by shubhra.bhattacharya • 120
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