Showing: variantreset
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all non-ALT position in a VCF are non-variants?
vcf altered alt variant written 9 days ago by cocchi.e8910 • updated 9 days ago by Pierre Lindenbaum118k
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Storing Varaint data from VCF
techstack ngs variant database written 19 days ago by mvkotekar20 • updated 18 days ago by Garan550
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Is Re-Sequencing Of Trait-Associated-Regions Required To Capture The Causal Variant?
variant snp written 6.0 years ago by kumar.vinod81280 • updated 19 days ago by Biostar ♦♦ 20
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Where To Get The Annotation File For The Nimblegen Seqcap Ez Exome V1
exome gatk variant bwa written 5.8 years ago by ewre220 • updated 20 days ago by 4779267570
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How to count variant occurrences in .vcf
.vcf ngs variant occurance snp written 5 weeks ago by darceyc170 • updated 5 weeks ago by colindaven1.1k
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RNA-SEQ SNP calling
indel variant snp rna-seq written 5 weeks ago by babji23180 • updated 5 weeks ago by JC7.6k
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PolyPhen Humdiv vs HumVar discrepancies
polyphen variant humvar humdiv written 7 weeks ago by cocchi.e8910 • updated 7 weeks ago by manuel.belmadani570
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vcf-subset error: "Wrong number of fields" in vcf file
vcf vcf-subset variant vcftools 1000 genomes written 3.6 years ago by Lylthera0 • updated 3 months ago by zx87546.8k
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Variant Annotation Integrator From Ucsc
exome variant written 5.6 years ago by ewre220 • updated 3 months ago by slcrick120
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Forum: Create a File format to store Variant
hgvs forum json variant standard written 9 months ago by sacha1.7k • updated 3 months ago by bdolin90
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VCF file period symbol in the genotype
vcf variant snp written 2.0 years ago by bharata1803420 • updated 6 months ago by RamRS20k
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Check if REF allele is minor allele in any variant
ref variant minor allele written 4.4 years ago by RamRS20k • updated 7 months ago by Shicheng Guo7.4k
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(Sanity check) Too many SNPs?
filter next-gen variant written 16 months ago by rightmirem50 • updated 8 months ago by Biostar ♦♦ 20
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How to know if a variant is sequencing or mapping artifact?
vcf variant freebayes written 9 months ago by kspata40 • updated 9 months ago by finswimmer11k
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SNPEff not showing SNP
annotation forum snpeff variant snp written 11 months ago by sanjay.bpkihs0 • updated 9 months ago by cpad011211k
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Get variant position knowing the gene name, base change, and NM#
gene genome coordinates variant written 9 months ago by bisansamara10 • updated 9 months ago by Tao270
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How does variant callers deal with N in the reference sequence?
genome reference N variant call written 9 months ago by pyjiang230 • updated 9 months ago by JC7.6k
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