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<prev • 320 results • page 1 of 11 • next >
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ANNOVAR issue annotating vcf
annover variant gnomad written 8 days ago by brismiller • 40
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bcftools filtering on INFO fields
vcf bcftools variant variants written 8 days ago by Stephane Plaisance • 410
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57
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Split phased haplotypes of same person coming from same parents
indel haplotype variant snp written 17 days ago by Parham • 1.5k
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104
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Statistical meaning of top hit and top 10
gene score variant written 22 days ago by LimMo • 0
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71
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Varscan2 somatic output annotation with snpEff -cancer option
annotation snpeff varscan2 variant sequencing written 5 weeks ago by jobrien • 0
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STAR error (segmentation fault) in Aligning reads
reads ngs alignment variant star written 6 months ago by spriyansh29 • 30
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determine exon number from variant genomic coordinates
exome exon variant coordinates human written 9 weeks ago by cocchi.e89 • 80 • updated 9 weeks ago by rbagnall • 1.6k
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VEP MutationAssessor output
vep mutationassessor variant human written 12 weeks ago by cocchi.e89 • 80 • updated 11 weeks ago by Ben_Ensembl • 1.5k
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create an haplotype
haplotype variant snp written 11 weeks ago by marmar • 0
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freebayes haplotype calling (phased variants)
freebayes haplotype phase variant phased written 4.3 years ago by mark.rose • 40 • updated 12 weeks ago by mikemc • 10
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List Of Dbsnp Variants Where Reference Genome Has Minor Allele
exome reference dbsnp variant written 8.6 years ago by Ana Rodrigues Grant • 30 • updated 3 months ago by Biostar ♦♦ 20
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112
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Extracting variant reads and reference reads quickly from mapped files
dna-seq variant written 3 months ago by graeme.thorn • 50
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146
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Pipes within VCF INFO Column
vcf exome-sequencing next-gen variant snp written 3 months ago by basay3 • 0 • updated 3 months ago by genomax ♦ 85k
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Why There Are A Lot Of Mq0 Reads In Some Particular Regions?
calling variant written 7.5 years ago by lyz10302012 • 360 • updated 3 months ago by Biostar ♦♦ 20
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Sequence Conflict in Uniprot
variant mutation gwas genomics sequencing written 3 months ago by Negin • 0 • updated 3 months ago by JC ♦ 10k
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callVariants problem with hg38 aligned bam: DEBUG - There are 0 filtered variant candidates in reads which overlap the region
variant platypus snp written 4 months ago by Paso • 10
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Tool: CRAVAT: a web tool to annotate and analyze cancer variants
annotation sequencing variant tool cancer written 4.7 years ago by Collin • 830 • updated 4 months ago by slcrick • 230
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Using SnpEff on Galaxy
vcf assembly ngs variant snp written 5 months ago by pmenon0998 • 0
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Validating Predictions Of Small Insertions / Deletions
gatk variant written 6.4 years ago by Ron • 990 • updated 5 months ago by Biostar ♦♦ 20
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19 follow
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Tutorial: Resources / databases for clinical interpretation of cancer variants
cancer interpretation tutorial variant annotation clinical written 8 months ago by Malachi Griffith ♦ 18k
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How to integrate custom variant callers for consensus genotyping using CGES?
genotyping cges consens variant germline written 5 months ago by lakhujanivijay ♦ 5.0k
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few variants annotated with dbSNFP3.5a
vcf sbnsfp dbsnp variant written 6 months ago by Myosotis1979 • 10 • updated 6 months ago by RamRS ♦ 27k
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How to count variant occurrences in .vcf
.vcf ngs variant occurance snp written 16 months ago by darceyc17 • 0 • updated 6 months ago by Biostar ♦♦ 20
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149
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conversion of genomic variant to coding variant to protein variant
coordinates variant snp conversion written 6 months ago by justinms • 10
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Problems installing the new VCF File Visualization tool VIVA
vcf visualization viva variant julia written 7 months ago by gcooper1245 • 10
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12 follow
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Recommendations For Python Vcf Parser/Writer?
vcf python variation variant written 8.5 years ago by Reece • 270 • updated 7 months ago by Dataman • 330
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228
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Detecting variants in mapped reads against 16S rRNA reference sequence
rrna variant prokka written 8 months ago by claping • 0
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211
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ClinVar and HGVS variant (insertion) definition for protein sequence
hgvs protein clinvar variant insertion written 8 months ago by Yu • 110
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Meaning of minus ("-") sign in frameshift protein variant nomenclature
annotation ngs variant nomenclature written 8 months ago by bhuwanhld18 • 0
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Need recommendations of RNA-Seq somatic variant calling pipeline
somatic variant rna-seq written 8 months ago by Zhenyu Zhang • 270
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