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<prev • 233 results • page 1 of 8 • next >
2
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1
answer
172
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1
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Meaning of 'tag' in the context of variants
interpretation variant written 6 weeks ago by andrewl • 10 • updated 1 day ago by Dan Gaston ♦ 6.8k
0
votes
1
answer
163
views
1
answer
Pipeline design: from reads to consensus sequences of multiple individuals
consensus pipeline alignment variant mapping written 16 days ago by agathejouet • 0
5
votes
2
answers
131
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2
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retrospective trio analysis from WGS SNPs
trio lineage pedigree variant snp written 16 days ago by harold.smith.tarheel • 3.8k • updated 16 days ago by andrew.j.skelton73 • 3.7k
3
votes
1
answer
176
views
1
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determine loss- or gain-of-function of specific mutation
mutation variant snv written 4 weeks ago by igor • 4.5k • updated 4 weeks ago by mforde84 • 900
7
votes
1
answer
248
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1
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UTR size range for 5' UTR & 3' UTR variants
gene sequence biology variant written 5 weeks ago by anupriyaverma1408 • 100 • updated 5 weeks ago by Emily_Ensembl ♦ 13k
17
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4
answers
1.4k
views
12 follow
4
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Best way to compare two samples in a VCF file
vcf comparison variant genotype snp written 9 months ago by Macspider • 1.5k
4
votes
1
answer
194
views
1
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Is SNPeff still the standard for variant effect prediction?
exome annotation snpeff variant written 9 weeks ago by Lauren • 10 • updated 9 weeks ago by Samuel Brady • 230
0
votes
0
answers
169
views
0
answers
Galaxy VarScan SNP size and stderr
varscan galaxy variant bam written 10 weeks ago by louis.gil007 • 0
2
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2
answers
2.3k
views
2
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Selecting variants from a VCF file
vcf next-gen variant snp written 3.2 years ago by matt.christmas85 • 0 • updated 12 weeks ago by panatheod • 0
1
vote
1
answer
263
views
1
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 5 months ago by Macspider • 1.5k • updated 3 months ago by Biostar ♦♦ 20
0
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0
answers
136
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0
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Finding two strains of a genome having SNPs/SNVs in their repeat regions
genome repeat variant snp sequencing written 3 months ago by smho • 40
24
votes
1
answer
377
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7 follow
1
answer
Are these false somatic variants? Visual inspection with IGV
somatic variant mutations snp igv written 4 months ago by andreslanzos • 50 • updated 4 months ago by d-cameron • 850
0
votes
1
answer
159
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1
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I need some sets of pathogenic variants related to any mendelian disorder.
prioritization variant written 4 months ago by sktbanerjee1 • 20 • updated 4 months ago by WouterDeCoster ♦ 21k
7
votes
4
answers
330
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6 follow
4
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Does allele refer to the entire gene sequence or one position of the gene sequence?
alleles snps variant written 4 months ago by ngsbioinformaticslearner • 0 • updated 4 months ago by i.sudbery • 1.6k
5
votes
2
answers
298
views
2
answers
Any comparisons of read length for variant calling?
assembly next-gen variant snp gatk written 5 months ago by Sukhdeep Singh ♦ 9.0k • updated 5 months ago by Brian Bushnell ♦ 14k
3
votes
1
answer
239
views
1
answer
Variant callers reporting different read depth on same alignment
variant calling gatk freebayes variant annotation written 5 months ago by Lauren • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 98k
0
votes
1
answer
206
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1
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Where to find the file Variant.Alternate designations on the ClinVar FTP server?
gene clinvar variant written 5 months ago by esproff • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 98k
0
votes
1
answer
907
views
1
answer
Missing Snp Variants In Two 10Mb Blocks On Chr1 And Chr9 In 1000 Genome Data?
1000genomes variant snp written 3.5 years ago by Zhenyu • 150 • updated 6 months ago by Biostar ♦♦ 20
0
votes
1
answer
264
views
1
answer
VCF file period symbol in the genotype
vcf variant snp written 6 months ago by bharata1803 • 230 • updated 6 months ago by finswimmer • 430
0
votes
0
answers
176
views
0
answers
Getting SNPs that are the complementary base of the reference
calling allele variant snp alternative written 6 months ago by Macspider • 1.5k
0
votes
1
answer
278
views
1
answer
Convert amino acid and nucleotide coding changes between notation formats
variant written 6 months ago by steve • 880 • updated 6 months ago by Petr Ponomarenko • 2.4k
2
votes
2
answers
286
views
2
answers
In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 7 months ago by Chen • 560 • updated 7 months ago by WouterDeCoster ♦ 21k
15
votes
4
answers
1.7k
views
4
answers
Determine sex from vcf file (or sequencing data)
vcf variant genotyping written 16 months ago by kulvait • 200 • updated 7 months ago by Biostar ♦♦ 20
6
votes
2
answers
241
views
2
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Why annotation doesn't respect VCF field schema ?
vcf annotation format variant specification written 7 months ago by sacha • 800 • updated 7 months ago by EnsemblWill • 550
0
votes
0
answers
302
views
0
answers
Is Pindel slow for everyone, or should I review my command?
variant pindel detection program structural written 8 months ago by Macspider • 1.5k
0
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0
answers
301
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0
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Quality, MQ0F, other parameters for proper VCF filtering
genome vcf alignment variant snp written 8 months ago by Macspider • 1.5k
2
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0
answers
259
views
0
answers
Tool: wtools : An API REST for variant tools
varianttools variant filtering snp annotation written 8 months ago by sacha • 800
3
votes
5
answers
4.7k
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5
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Addin gene information to VCF file
annotation next-gen variant snp written 2.8 years ago by ScienceBuff • 30 • updated 8 months ago by duke • 10
2
votes
1
answer
411
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1
answer
Extract nucleotide read quartet from vcf file
vcf variant snp written 11 months ago by berge2015 • 70 • updated 8 months ago by Biostar ♦♦ 20
0
votes
1
answer
347
views
1
answer
SVM based Filtering For NGS data
svm next-gen variant filtering written 8 months ago by manojkumarbioinfo • 20 • updated 8 months ago by Vivek • 1.9k
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