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<prev • 277 results • page 1 of 10 • next >
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VARIANT effect retrieving
indel variant effect snv written 1 day ago by cocchi.e89 • 10
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Variant Effect Prediction Databases
variant database prediction effect written 8 days ago by cocchi.e89 • 10
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all non-ALT position in a VCF are non-variants?
vcf altered alt variant written 9 days ago by cocchi.e89 • 10 • updated 9 days ago by Pierre Lindenbaum ♦ 118k
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5 follow
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Storing Varaint data from VCF
techstack ngs variant database written 19 days ago by mvkotekar • 20 • updated 18 days ago by Garan • 550
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bash, how can I distinguish synonymous from non-synonymous variants in VCF files?
vcf R variant written 18 days ago by Davide Chicco • 80 • updated 18 days ago by karl.stamm ♦ 3.4k
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Is Re-Sequencing Of Trait-Associated-Regions Required To Capture The Causal Variant?
variant snp written 6.0 years ago by kumar.vinod81 • 280 • updated 19 days ago by Biostar ♦♦ 20
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Where To Get The Annotation File For The Nimblegen Seqcap Ez Exome V1
exome gatk variant bwa written 5.8 years ago by ewre • 220 • updated 20 days ago by 477926757 • 0
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How to count variant occurrences in .vcf
.vcf ngs variant occurance snp written 5 weeks ago by darceyc17 • 0 • updated 5 weeks ago by colindaven • 1.1k
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RNA-SEQ SNP calling
indel variant snp rna-seq written 5 weeks ago by babji2318 • 0 • updated 5 weeks ago by JC ♦ 7.6k
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CLINVAR multiple molecular consequences
effect clinvar variant molecular consequence written 6 weeks ago by cocchi.e89 • 10
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PolyPhen Humdiv vs HumVar discrepancies
polyphen variant humvar humdiv written 7 weeks ago by cocchi.e89 • 10 • updated 7 weeks ago by manuel.belmadani • 570
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getting the HOM_REF genotypes using bcftools mpileup+call ?
bcftools variant call mpileup genotype written 8 weeks ago by Pierre Lindenbaum ♦ 118k • updated 8 weeks ago by RamRS ♦ 20k
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vcf-subset error: "Wrong number of fields" in vcf file
vcf vcf-subset variant vcftools 1000 genomes written 3.6 years ago by Lylthera • 0 • updated 3 months ago by zx8754 ♦ 6.8k
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Variant Annotation Integrator From Ucsc
exome variant written 5.6 years ago by ewre • 220 • updated 3 months ago by slcrick • 120
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9 follow
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Forum: Create a File format to store Variant
hgvs forum json variant standard written 9 months ago by sacha • 1.7k • updated 3 months ago by bdolin • 90
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GATK Panel Of Normals (PoN)
gatk beta calling variant written 4 months ago by b.d237 • 40
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ANNOVAR annotate frameshift
annovar mutation variant exonic written 5 months ago by sugus • 30
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Should I replace heterozygous variants to make a consensus
consensus genome heterozygous variant assembly written 5 months ago by deepti1rao • 20
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VCF file period symbol in the genotype
vcf variant snp written 2.0 years ago by bharata1803 • 420 • updated 6 months ago by RamRS ♦ 20k
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How to export the SNPs between whole genome alignments using the command line?
sequence-alignment alignment variant mauve snp written 7 months ago by Paul • 70 • updated 7 months ago by h.mon ♦ 24k
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Check if REF allele is minor allele in any variant
ref variant minor allele written 4.4 years ago by RamRS ♦ 20k • updated 7 months ago by Shicheng Guo • 7.4k
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What's the difference between the /rest/variant and /rest/variant/variant requests to the Exac API?
api variant exac snp written 7 months ago by kynnjo • 20 • updated 7 months ago by finswimmer ♦ 11k
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Searching for mutation
gene R mutation variant snp written 7 months ago by nesrine.trabelsi.n • 0
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1
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585
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(Sanity check) Too many SNPs?
filter next-gen variant written 16 months ago by rightmirem • 50 • updated 8 months ago by Biostar ♦♦ 20
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Why VarScan always get more somatic variants than other caller
varscan variant written 9 months ago by CY • 280
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How to know if a variant is sequencing or mapping artifact?
vcf variant freebayes written 9 months ago by kspata • 40 • updated 9 months ago by finswimmer ♦ 11k
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SNPEff not showing SNP
annotation forum snpeff variant snp written 11 months ago by sanjay.bpkihs • 0 • updated 9 months ago by cpad0112 ♦ 11k
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5 follow
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Get variant position knowing the gene name, base change, and NM#
gene genome coordinates variant written 9 months ago by bisansamara • 10 • updated 9 months ago by Tao • 270
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How does variant callers deal with N in the reference sequence?
genome reference N variant call written 9 months ago by pyjiang2 • 30 • updated 9 months ago by JC ♦ 7.6k
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Read position bias (RPB and PV4) fields from samtools mpileup: how to get them?
rpb variant mpileup snp call written 10 months ago by Macspider • 2.8k • updated 10 months ago by al.bodrug • 50
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