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<prev • 284 results • page 1 of 10 • next >
7
votes
1
answer
110
views
1
answer
why A/T or C/G are ambiguous SNPs?
genome variant snp strand written 3 days ago by seta • 1.1k • updated 3 days ago by Emily_Ensembl ♦ 18k
0
votes
0
answers
53
views
0
answers
Variant Calling between Microbial Populations
populations snp calling variant samtools written 18 days ago by gabriel.jabud • 0
4
votes
1
answer
128
views
5 follow
1
answer
How to check the allele strand of variants?
variant written 20 days ago by seta • 1.1k • updated 18 days ago by Emily_Ensembl ♦ 18k
0
votes
0
answers
1.7k
views
0
answers
Strange variant call it show a indel but looks like a SNP
indel snp variant ion caller written 4.5 years ago by cristianrohr768 • 30 • updated 18 days ago by Biostar ♦♦ 20
0
votes
1
answer
81
views
1
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extracting snps from multiple vcf file but present in proportion of samples
vcf variant snp written 20 days ago by ankit hinsu • 10 • updated 20 days ago by Pierre Lindenbaum ♦ 119k
1
vote
1
answer
106
views
1
answer
table to convert RS names to CHR-POS-REF-ALT (es GnomAD)
rs nomeclature variant gnomad names written 21 days ago by cocchi.e89 • 10
5
votes
3
answers
210
views
6 follow
3
answers
Storing Varaint data from VCF
techstack ngs variant database written 6 weeks ago by mvkotekar • 20 • updated 22 days ago by floris.barthel • 40
0
votes
0
answers
107
views
0
answers
Bcftools Call method not detecting single nucleotide deletions?
variant calling bcftools samtools variant written 23 days ago by kennyworkman • 0
5
votes
1
answer
140
views
1
answer
New Variants Effect Prediction Tools
indel variant effect snv written 25 days ago by cocchi.e89 • 10 • updated 25 days ago by Emily_Ensembl ♦ 18k
0
votes
0
answers
80
views
0
answers
VARIANT effect retrieving
indel variant effect snv written 27 days ago by cocchi.e89 • 10
0
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0
answers
99
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0
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Variant Effect Prediction Databases
variant database prediction effect written 4 weeks ago by cocchi.e89 • 10
0
votes
0
answers
109
views
0
answers
all non-ALT position in a VCF are non-variants?
vcf altered alt variant written 5 weeks ago by cocchi.e89 • 10 • updated 5 weeks ago by Pierre Lindenbaum ♦ 119k
3
votes
1
answer
166
views
1
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bash, how can I distinguish synonymous from non-synonymous variants in VCF files?
vcf R variant written 6 weeks ago by Davide Chicco • 80 • updated 6 weeks ago by karl.stamm ♦ 3.4k
3
votes
1
answer
1.2k
views
1
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Is Re-Sequencing Of Trait-Associated-Regions Required To Capture The Causal Variant?
variant snp written 6.1 years ago by kumar.vinod81 • 280 • updated 6 weeks ago by Biostar ♦♦ 20
1
vote
3
answers
2.3k
views
3
answers
Where To Get The Annotation File For The Nimblegen Seqcap Ez Exome V1
exome gatk variant bwa written 5.9 years ago by ewre • 220 • updated 6 weeks ago by 477926757 • 0
0
votes
1
answer
195
views
1
answer
How to count variant occurrences in .vcf
.vcf ngs variant occurance snp written 9 weeks ago by darceyc17 • 0 • updated 9 weeks ago by colindaven • 1.2k
1
vote
1
answer
234
views
1
answer
RNA-SEQ SNP calling
indel variant snp rna-seq written 9 weeks ago by babji2318 • 0 • updated 9 weeks ago by JC ♦ 7.7k
2
votes
0
answers
172
views
0
answers
CLINVAR multiple molecular consequences
effect clinvar variant molecular consequence written 9 weeks ago by cocchi.e89 • 10
0
votes
1
answer
161
views
1
answer
PolyPhen Humdiv vs HumVar discrepancies
polyphen variant humvar humdiv written 11 weeks ago by cocchi.e89 • 10 • updated 11 weeks ago by manuel.belmadani • 730
2
votes
0
answers
250
views
0
answers
getting the HOM_REF genotypes using bcftools mpileup+call ?
bcftools variant call mpileup genotype written 12 weeks ago by Pierre Lindenbaum ♦ 119k • updated 12 weeks ago by RamRS ♦ 21k
1
vote
2
answers
1.9k
views
2
answers
vcf-subset error: "Wrong number of fields" in vcf file
vcf vcf-subset variant vcftools 1000 genomes written 3.7 years ago by Lylthera • 0 • updated 4 months ago by zx8754 ♦ 7.1k
3
votes
2
answers
2.3k
views
7 follow
2
answers
Variant Annotation Integrator From Ucsc
exome variant written 5.7 years ago by ewre • 220 • updated 4 months ago by slcrick • 120
18
votes
5
answers
660
views
9 follow
5
answers
Forum: Create a File format to store Variant
hgvs forum json variant standard written 9 months ago by sacha • 1.7k • updated 4 months ago by bdolin • 90
0
votes
1
answer
379
views
1
answer
GATK Panel Of Normals (PoN)
gatk beta calling variant written 5 months ago by b.d237 • 100
1
vote
1
answer
277
views
1
answer
ANNOVAR annotate frameshift
annovar mutation variant exonic written 6 months ago by sugus • 30
0
votes
0
answers
259
views
0
answers
Should I replace heterozygous variants to make a consensus
consensus genome heterozygous variant assembly written 6 months ago by deepti1rao • 20
1
vote
1
answer
1.3k
views
1
answer
VCF file period symbol in the genotype
vcf variant snp written 2.1 years ago by bharata1803 • 420 • updated 7 months ago by RamRS ♦ 21k
3
votes
1
answer
329
views
1
answer
How to export the SNPs between whole genome alignments using the command line?
sequence-alignment alignment variant mauve snp written 7 months ago by Paul • 70 • updated 7 months ago by h.mon ♦ 24k
6
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2
answers
3.1k
views
2
answers
Check if REF allele is minor allele in any variant
ref variant minor allele written 4.4 years ago by RamRS ♦ 21k • updated 8 months ago by Shicheng Guo • 7.4k
0
votes
1
answer
298
views
1
answer
What's the difference between the /rest/variant and /rest/variant/variant requests to the Exac API?
api variant exac snp written 8 months ago by kynnjo • 20 • updated 8 months ago by finswimmer ♦ 11k
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