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<prev • 267 results • page 1 of 9 • next >
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GATK Panel Of Normals (PoN)
gatk beta calling variant written 17 days ago by b.d237 • 30
1
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1
answer
108
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1
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ANNOVAR annotate frameshift
annovar mutation variant exonic written 29 days ago by sugus • 20
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144
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Should I replace heterozygous variants to make a consensus
consensus genome heterozygous variant assembly written 6 weeks ago by deepti1rao • 20
1
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1
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969
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1
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VCF file period symbol in the genotype
vcf variant snp written 20 months ago by bharata1803 • 380 • updated 10 weeks ago by RamRS ♦ 19k
3
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1
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205
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1
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How to export the SNPs between whole genome alignments using the command line?
sequence-alignment alignment variant mauve snp written 12 weeks ago by Paul • 60 • updated 12 weeks ago by h.mon ♦ 21k
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2.8k
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Check if REF allele is minor allele in any variant
ref variant minor allele written 4.0 years ago by RamRS ♦ 19k • updated 12 weeks ago by Shicheng Guo • 7.0k
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1
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168
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1
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What's the difference between the /rest/variant and /rest/variant/variant requests to the Exac API?
api variant exac snp written 3 months ago by kynnjo • 20 • updated 3 months ago by finswimmer ♦ 6.9k
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150
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Searching for mutation
gene R mutation variant snp written 3 months ago by nesrine.trabelsi.n • 0
6
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1
answer
495
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1
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(Sanity check) Too many SNPs?
filter next-gen variant written 12 months ago by rightmirem • 50 • updated 4 months ago by Biostar ♦♦ 20
16
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4
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421
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8 follow
4
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Forum: Create a File format to store Variant
hgvs forum json variant standard written 4 months ago by sacha • 1.6k • updated 4 months ago by d-cameron • 1.9k
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173
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Why VarScan always get more somatic variants than other caller
varscan variant written 4 months ago by CY • 230
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1
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286
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1
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How to know if a variant is sequencing or mapping artifact?
vcf variant freebayes written 4 months ago by kspata • 40 • updated 4 months ago by finswimmer ♦ 6.9k
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258
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SNPEff not showing SNP
annotation forum snpeff variant snp written 6 months ago by sanjay.bpkihs • 0 • updated 4 months ago by cpad0112 • 10.0k
3
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1
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223
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5 follow
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Get variant position knowing the gene name, base change, and NM#
gene genome coordinates variant written 4 months ago by bisansamara • 10 • updated 4 months ago by Tao • 250
2
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1
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196
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1
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How does variant callers deal with N in the reference sequence?
genome reference N variant call written 5 months ago by pyjiang2 • 30 • updated 5 months ago by JC ♦ 6.9k
2
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1
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208
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1
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Read position bias (RPB and PV4) fields from samtools mpileup: how to get them?
rpb variant mpileup snp call written 5 months ago by Macspider • 2.6k • updated 5 months ago by al.bodrug • 50
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197
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Variant enrichment quantification
enrichment variant clone statistics written 5 months ago by NaskoMak • 0
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166
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Find polymorphic/variant sequences of a given protein sequence.
variant sequence polymorphism written 6 months ago by db4 • 0
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146
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Variant distance bias (VDB) in VCF format: how to compute properly?
vcf vdb variant distance bias written 6 months ago by Macspider • 2.6k
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1
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890
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1
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Variant calling on single-cell data
single-cell variant snp written 10 months ago by vinvan • 30 • updated 6 months ago by oneillkza • 60
3
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1
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246
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1
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Inconsistency of allele depth in BAM and VCF
vcf allele depth variant bam written 6 months ago by CY • 230 • updated 6 months ago by Noushin N • 530
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176
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SNP/Mbp rate weird, any known bias/artifact?
mbp calling variant snp bias written 7 months ago by Macspider • 2.6k
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1
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451
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1
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Problems left-normalizing variants with bctools, GATK, combining with ANNOVAR annotations
annotation variant written 7 months ago by steve • 1.8k
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2
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279
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2
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Identify the nearest common SNP to a given rare variant
bioinformatics analysis variant snv snp written 7 months ago by bisansamara • 10
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1
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1.9k
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1
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How to visualize large VCF files
vcf variant calling snps variant snp written 2.5 years ago by bioinforesearchquestions • 180 • updated 7 months ago by Biostar ♦♦ 20
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246
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Joining Clinvar with variant data using sql
23andme variant clinvar written 7 months ago by iCode • 0
8
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1
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806
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6 follow
1
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Forum: SNP calling in 2018
gatk forum variant snp written 8 months ago by Picasa • 390 • updated 8 months ago by WouterDeCoster ♦ 34k
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587
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[ti_index_core] the chromosome blocks not continuous at line xxxx, is the file sorted? [pos 1]
vcf variant index written 8 months ago by shubhra.bhattacharya • 70
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5 follow
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How To Get Consensus Sequence Including Variant From A Vcf File For Several Individuals...?
vcf consensus calling variant gatk written 6.1 years ago by Bioch'Ti • 1000 • updated 9 months ago by boczniak767 • 610
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Annotate variants based on site mutability
annotation cpg variant mutability written 9 months ago by adamlaurajacob • 0
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