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<prev • 226 results • page 1 of 8 • next >
1
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 11 weeks ago by Macspider • 1.2k • updated 3 days ago by Biostar ♦♦ 20
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0
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77
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0
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Finding two strains of a genome having SNPs/SNVs in their repeat regions
genome repeat variant snp sequencing written 18 days ago by smho • 0
24
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1
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254
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7 follow
1
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Are these false somatic variants? Visual inspection with IGV
somatic variant mutations snp igv written 4 weeks ago by andreslanzos • 50 • updated 4 weeks ago by d-cameron • 740
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1
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99
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1
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I need some sets of pathogenic variants related to any mendelian disorder.
prioritization variant written 6 weeks ago by sktbanerjee1 • 20 • updated 6 weeks ago by WouterDeCoster ♦ 19k
7
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4
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230
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6 follow
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Does allele refer to the entire gene sequence or one position of the gene sequence?
alleles snps variant written 7 weeks ago by ngsbioinformaticslearner • 0 • updated 7 weeks ago by i.sudbery • 1.3k
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2
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186
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2
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Any comparisons of read length for variant calling?
assembly next-gen variant snp gatk written 9 weeks ago by Sukhdeep Singh ♦ 8.8k • updated 9 weeks ago by Brian Bushnell ♦ 12k
3
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1
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141
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1
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Variant callers reporting different read depth on same alignment
variant calling gatk freebayes variant annotation written 9 weeks ago by murrayln • 10 • updated 9 weeks ago by Pierre Lindenbaum ♦ 95k
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1
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156
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1
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Where to find the file Variant.Alternate designations on the ClinVar FTP server?
gene clinvar variant written 10 weeks ago by esproff • 0 • updated 10 weeks ago by Pierre Lindenbaum ♦ 95k
0
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1
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844
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1
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Missing Snp Variants In Two 10Mb Blocks On Chr1 And Chr9 In 1000 Genome Data?
1000genomes variant snp written 3.3 years ago by Zhenyu • 150 • updated 3 months ago by Biostar ♦♦ 20
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1
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153
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1
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VCF file period symbol in the genotype
vcf variant snp written 3 months ago by bharata1803 • 220 • updated 3 months ago by finswimmer77 • 200
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0
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129
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Getting SNPs that are the complementary base of the reference
calling allele variant snp alternative written 3 months ago by Macspider • 1.2k
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1
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199
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1
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Convert amino acid and nucleotide coding changes between notation formats
variant written 3 months ago by steve • 760 • updated 3 months ago by Petr Ponomarenko • 2.4k
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2
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208
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2
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In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 4 months ago by Chen • 480 • updated 4 months ago by WouterDeCoster ♦ 19k
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4
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1.4k
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4
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Determine sex from vcf file (or sequencing data)
vcf variant genotyping written 13 months ago by kulvait • 160 • updated 4 months ago by Biostar ♦♦ 20
6
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2
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185
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2
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Why annotation doesn't respect VCF field schema ?
vcf annotation format variant specification written 4 months ago by sacha • 770 • updated 4 months ago by EnsemblWill • 500
0
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0
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243
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0
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Is Pindel slow for everyone, or should I review my command?
variant pindel detection program structural written 5 months ago by Macspider • 1.2k
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221
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0
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Quality, MQ0F, other parameters for proper VCF filtering
genome vcf alignment variant snp written 5 months ago by Macspider • 1.2k
2
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203
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0
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Tool: wtools : An API REST for variant tools
varianttools variant filtering snp annotation written 5 months ago by sacha • 770
2
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5
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4.2k
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5
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Addin gene information to VCF file
annotation next-gen variant snp written 2.6 years ago by ScienceBuff • 30 • updated 5 months ago by duke • 10
2
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1
answer
359
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1
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Extract nucleotide read quartet from vcf file
vcf variant snp written 9 months ago by berge2015 • 70 • updated 5 months ago by Biostar ♦♦ 20
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1
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280
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1
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SVM based Filtering For NGS data
svm next-gen variant filtering written 5 months ago by manojkumarbioinfo • 20 • updated 5 months ago by Vivek • 1.7k
2
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1
answer
232
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1
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How to output all variant alleles at a given site, regardless of quality
variant snp mpileup written 6 months ago by correlationmatrix • 20 • updated 6 months ago by Brian Bushnell ♦ 12k
13
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4
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719
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9 follow
4
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Best way to compare two samples in a VCF file
vcf comparison variant genotype snp written 6 months ago by Macspider • 1.2k • updated 6 months ago by novice • 660
51
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6
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19k
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24 follow
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New Fasta Sequence From Reference Fasta And Variant Calls File?
vcf fasta consensus variant written 6.3 years ago by Gaffa • 490 • updated 7 months ago by DragonDNA • 30
0
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1
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340
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1
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varscan misses alternate variant alleles
variant freebayes insertion mpileup deletion written 7 months ago by mark.rose • 10
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1
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299
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1
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Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 7 months ago by Paul • 600 • updated 7 months ago by Zaag • 600
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1
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343
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1
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drug response variant datasets
snp variant drug response biobase written 9 months ago by arronslacey • 210 • updated 7 months ago by dyollluap • 180
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397
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burden test/SKAT on exome study without control
skat exom-seq variant snp written 8 months ago by F • 2.6k
12
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3
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4.8k
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9 follow
3
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Identifying De Novo Variants In Trio Data
gatk differential-expression variant written 5.0 years ago by Vivek • 1.7k • updated 8 months ago by daniel • 30
0
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263
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How to get the number of RNA reads for mutations of exome-seq?
exome-seq mutation variant rna-seq written 8 months ago by agicict • 60
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