Showing: variantreset
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In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 1 day ago by Chen Sun380 • updated 9 hours ago by WouterDeCoster13k
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Determine sex from vcf file (or sequencing data)
vcf variant genotyping written 9 months ago by kulvait160 • updated 12 hours ago by Biostar ♦♦ 10
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Why annotation doesn't respect VCF field schema ?
vcf annotation format variant specification written 10 days ago by sacha660 • updated 10 days ago by EnsemblWill450
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Addin gene information to VCF file
annotation next-gen variant snp written 2.2 years ago by ScienceBuff30 • updated 7 weeks ago by duke0
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Extract nucleotide read quartet from vcf file
vcf variant snp written 4 months ago by berge201570 • updated 7 weeks ago by Biostar ♦♦ 10
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SVM based Filtering For NGS data
svm next-gen variant filtering written 7 weeks ago by manojkumarbioinfo20 • updated 7 weeks ago by Vivek1.6k
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Best way to compare two samples in a VCF file
vcf comparison variant genotype snp written 12 weeks ago by Macspider400 • updated 11 weeks ago by novice550
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New Fasta Sequence From Reference Fasta And Variant Calls File?
vcf fasta consensus variant written 6.0 years ago by Gaffa480 • updated 3 months ago by DragonDNA0
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Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 3 months ago by Paul490 • updated 3 months ago by Zaag530
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drug response variant datasets
snp variant drug response biobase written 5 months ago by arronslacey200 • updated 3 months ago by dyollluap120
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Identifying De Novo Variants In Trio Data
gatk differential-expression variant written 4.6 years ago by Vivek1.6k • updated 4 months ago by daniel30
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How to make new VCF files myself?
vcf variant variantannotation written 6 months ago by Ameerosein70 • updated 5 months ago by chen700
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23andme file format
vcf 23andme format variant written 5 months ago by bkellman0 • updated 5 months ago by Tonor390
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start and end coordinates reversed in ensembl
ensembl dbsnp variant snp written 5 months ago by jde7150 • updated 5 months ago by harold.smith.tarheel3.5k
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Somatic mutations database with corresponding bam files
somatic bam mutation variant written 7 months ago by Rad740 • updated 5 months ago by Biostar ♦♦ 10
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FIlter in Galaxy for string with wildcards
galaxy filter snps variant written 6 months ago by techdemonstrations0 • updated 6 months ago by Devon Ryan62k
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Converting Wgsim Output To Vcf
vcf variant written 5.2 years ago by Pascal1.4k • updated 6 months ago by Biostar ♦♦ 10
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bam-readcount fails to report all positions
alignment variant bam-readcount bam written 6 months ago by mark.rose10 • updated 6 months ago by ernfrid160
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Vcf strange representation of alt and ref
vcf variant written 6 months ago by sacha660 • updated 6 months ago by swbarnes22.6k
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