Showing: variantreset
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VCF file period symbol in the genotype
vcf variant snp written 18 months ago by bharata1803290 • updated 20 days ago by RamRS17k
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Check if REF allele is minor allele in any variant
ref variant minor allele written 3.9 years ago by RamRS17k • updated 4 weeks ago by Shicheng Guo6.5k
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(Sanity check) Too many SNPs?
filter next-gen variant written 10 months ago by rightmirem50 • updated 10 weeks ago by Biostar ♦♦ 20
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Forum: Create a File format to store Variant
hgvs forum json variant standard written 12 weeks ago by sacha1.5k • updated 12 weeks ago by d-cameron1.9k
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How to know if a variant is sequencing or mapping artifact?
vcf variant freebayes written 3 months ago by kspata30 • updated 3 months ago by finswimmer5.4k
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SNPEff not showing SNP
annotation forum snpeff variant snp written 4 months ago by sanjay.bpkihs0 • updated 3 months ago by cpad01129.0k
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Get variant position knowing the gene name, base change, and NM#
gene genome coordinates variant written 3 months ago by bisansamara10 • updated 3 months ago by Tao240
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How does variant callers deal with N in the reference sequence?
genome reference N variant call written 3 months ago by pyjiang230 • updated 3 months ago by JC6.8k
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Variant calling on single-cell data
single-cell variant snp written 8 months ago by vinvan10 • updated 4 months ago by oneillkza60
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Inconsistency of allele depth in BAM and VCF
vcf allele depth variant bam written 4 months ago by CY190 • updated 4 months ago by Noushin N530
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How to visualize large VCF files
vcf variant calling snps variant snp written 2.3 years ago by bioinforesearchquestions160 • updated 6 months ago by Biostar ♦♦ 20
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Forum: SNP calling in 2018
gatk forum variant snp written 6 months ago by Picasa380 • updated 6 months ago by WouterDeCoster32k
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freebayes haplotype calling (phased variants)
freebayes haplotype phase variant phased written 2.5 years ago by mark.rose20 • updated 7 months ago by gkuffel2250
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