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VariantCalling with single sanger read
indel snps variantcalling blast written 3.7 years ago by Amirosein70 • updated 15 months ago by trausch1.5k
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CRAM reference registry and the GRch38 reference genome
cram bam samtools variantcalling grch38 written 17 months ago by Mehulsharma.25310 • updated 17 months ago by h.mon29k
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Dealing with a large sample for variant calling
jointcalling ngs alignment variantcalling written 17 months ago by Mehulsharma.25310 • updated 17 months ago by Pierre Lindenbaum128k
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GATK best practices for Broad-produced NGS data
gatk4 ngs broadinstitute variantcalling written 17 months ago by Mehulsharma.25310 • updated 17 months ago by vdauwera960
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Using the ranking value to filter
discosnp++ discosnp rna-seq variantcalling filter written 2.1 years ago by vguerracanedo10 • updated 2.1 years ago by pierre.peterlongo860
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Lowercase variants reported by SomaticSniper
somaticsniper variantcalling written 2.8 years ago by Inés Sentís10 • updated 2.8 years ago by Pierre Lindenbaum128k
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Intronic Variant Filtering
intron snp variantcalling written 2.9 years ago by cvu150 • updated 2.9 years ago by Samuel Brady310
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Variant calling for sanger reads
sanger alignment variantcalling variants written 3.8 years ago by Amirosein70 • updated 3.8 years ago by Keith Callenberg900
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Base Quality of a reported variant in VCF
vcf next-gen fastq alignment variantcalling written 5.3 years ago by VineethVenumadhavan30 • updated 5.3 years ago by Devon Ryan95k
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