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10
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3
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120
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separate_rows, but keep related ones together
R variants multiallelic written 12 days ago by _r_am32k • updated 12 days ago by zx87549.9k
16
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2
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10 follow
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How to call denovo and rare variants from a trios cohort?
trio gatk gvcf denovo variants written 6 weeks ago by dare_devil1.3k • updated 6 weeks ago by Jeremy Leipzig19k
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136
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1
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Best way to find intervals for parallelization of joint variant calling
parallel variants written 7 weeks ago by William4.7k • updated 7 weeks ago by Pierre Lindenbaum133k
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196
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151
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164
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8
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single sample somatic variant calling software
ffpe somatic tumor pipeline variants written 4.4 years ago by Zhenyu Zhang270 • updated 3 months ago by Emad0
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1
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162
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1
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comparison of variants between WGS samples
wgs gatk differences human variants written 4 months ago by cocchi.e89120 • updated 4 months ago by harold.smith.tarheel4.6k
2
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1
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215
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1
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0
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1
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194
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1
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Genotyping samples at a predetermined list of locations
gatk variants snp genotyping written 5 months ago by i.sudbery10k • updated 5 months ago by bari.ballew250
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0
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174
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0
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MAFtools variant classes mapping
mutations variants written 5 months ago by SunRise201910 • updated 5 months ago by _r_am32k
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166
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Clustering of SNPs toward same QUAL values
quality freebayes snp variants written 6 months ago by Begonia_pavonina20 • updated 6 months ago by Biostar ♦♦ 20
1
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1
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385
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1
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Confused about the AF tag in VCF from samtools/bcftools mpileup
vcf gatk samtools af variants written 6 months ago by Makplus T70 • updated 6 months ago by Renesh1.9k
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173
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1
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0
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132
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1
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225
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0
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2
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353
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2
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Inserting Variant allele frequency to VCF file
vcf strelka ngs vaf variants written 7 months ago by parvathi.sudha20 • updated 7 months ago by jared.andrews078.3k
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Best tool to merge .vcf files from different variant callers?
vcf gatk annotation snp variants written 8 months ago by j.lunger1810 • updated 7 months ago by Biostar ♦♦ 20
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1.1k
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Filtering phased alleles with GATK
linkage gatk exome variants phased written 4.1 years ago by petersam0 • updated 8 months ago by Biostar ♦♦ 20
0
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324
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SNPEFF genome build with specific codon usage
annotation snpeff variants written 9 months ago by Stephane Plaisance440 • updated 8 months ago by Biostar ♦♦ 20
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353
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0
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10
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199
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5 follow
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0
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237
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0
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4
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239
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Find mutations that are spatially clustered?
genome clustering granges variants written 10 months ago by Rubal330 • updated 10 months ago by bernatgel2.8k
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393
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0
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0
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1
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228
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1
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merge VCF single variants G>A and C>A into GC>AA
vcf exome variants hgvs written 11 months ago by cocchi.e89120 • updated 11 months ago by GokalpC50
2
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1
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307
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1
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0
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194
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0
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3
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1
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271
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1
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Flanking sequence retreival
fasta sequence extraction variants written 12 months ago by nadiabeg.comsats0 • updated 12 months ago by finswimmer14k
1
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0
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209
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0
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Using dbSNP dataset
vcf dbsnp variants written 12 months ago by rotemkat10
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