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Filtering phased alleles with GATK
linkage gatk exome variants phased written 3.5 years ago by petersam0 • updated 5 days ago by Biostar ♦♦ 20
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SNPEFF genome build with specific codon usage
annotation snpeff variants written 5 weeks ago by Stephane Plaisance410 • updated 8 days ago by Biostar ♦♦ 20
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Find mutations that are spatially clustered?
genome clustering granges variants written 10 weeks ago by Rubal310 • updated 10 weeks ago by bernatgel2.5k
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merge VCF single variants G>A and C>A into GC>AA
vcf exome variants hgvs written 3 months ago by cocchi.e8950 • updated 3 months ago by GokalpC50
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Flanking sequence retreival
fasta sequence extraction variants written 4 months ago by nadiabeg.comsats0 • updated 4 months ago by finswimmer13k
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Using dbSNP dataset
vcf dbsnp variants written 4 months ago by rotemkat0
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How to write HGVS nomination for noncoding intergenic variants
genome hgvs snp variants written 4 months ago by hsamireh0 • updated 4 months ago by manuel.belmadani1.2k
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index tabulate file to get chrom, pos, ref, alt
indexing tabix coordinates variants written 5 months ago by damian.loska10 • updated 5 months ago by Pierre Lindenbaum128k
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Extracting divergence times from 4DTv
substitution variants time 4dtv divergence written 17 months ago by Macspider3.0k • updated 7 months ago by Biostar ♦♦ 20
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Publicly available lymphoma datasets
methylation rna-seq variants written 9 months ago by Stefan0 • updated 9 months ago by jared.andrews075.5k
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Stats on WGS variant calls
wgs variants written 10 months ago by abbysue10 • updated 10 months ago by reza.jabal370
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