Showing: varscanreset
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How to get "normal.pileup" file for varscan somatic calling
varscan written 19 days ago by aadam354110 • updated 18 days ago by ATpoint7.5k
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Losing somatic SNPs
varscan snp varaft written 8 weeks ago by gab0 • updated 4 weeks ago by Biostar ♦♦ 20
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Varscan fpfilter error
varscan snp fpfilter bam-readcount somatic written 11 weeks ago by a0103901238710 • updated 11 weeks ago by Ram17k
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Work With Dnacopy (Bioconductor) And Varscan Copynumber Results
varscan bioconductor copynumber written 7.1 years ago by Mdeng510 • updated 3 months ago by Kinga270
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Copy number variation detection
varscan copy number variation snp written 4 months ago by v2710 • updated 4 months ago by d-cameron1.9k
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SNP/indel annotation in Arabidopsis
indel varscan arabidopsis snp written 5 months ago by Federico Giorgi420 • updated 5 months ago by finswimmer5.3k
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identifying TP53 germline mutations which are also in tumor cells.
somatic germline tp53 mutect varscan written 7 months ago by lait120 • updated 7 months ago by Noushin N530
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varscan copy number error
varscan cnv written 9 months ago by mittu1602150
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Why CNV calling using VarScan need two steps of fragments merging?
varscan copy number variant cnv written 9 months ago by CY190 • updated 9 months ago by arta540
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Variant Calling in Low-Complexity Regions
indel low-complexity variants snp varscan written 11 months ago by ATpoint7.5k • updated 10 months ago by Biostar ♦♦ 20
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Running THetA2 with Varscan input?
varscan theta tumorpurity written 15 months ago by hshah20 • updated 11 months ago by j.p.albrecht30
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VarScan2 Parsing Error
varscan java written 12 months ago by ATpoint7.5k
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Tool: Varscan: Variant Detection In Massively Parallel Sequencing Data
indel varscan tool snp written 6.4 years ago by Istvan Albert ♦♦ 77k • updated 13 months ago by AcademicDialysis60
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 16 months ago by mar.ark.parr30 • updated 15 months ago by Chris Miller20k
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varscan v2.3.9 filter Parse exception
varscan written 2.3 years ago by cafelumiere1270 • updated 16 months ago by jlx02480
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How to exclude noisy CNV from study?
dnacopy varscan copy number variation cnv wes written 18 months ago by rmateos.110 • updated 17 months ago by vchris_ngs4.5k
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Problems After Loading Varscan 2 Output Into Bioconductor.Dnacopy
exome varscan copynumber cnv sequencing written 5.5 years ago by sousuffer20 • updated 17 months ago by Biostar ♦♦ 20
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How to interpret tandem SNP in
varscan ngs dna-seq variants written 18 months ago by Paul1.1k
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varscan2 mpileup2snp output contains indels
vcf indels mpileup2snp varscan written 2.5 years ago by AW350 • updated 19 months ago by Biostar ♦♦ 20
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What allele frequency threshold do you recommend?
varscan written 21 months ago by agata88730 • updated 19 months ago by Biostar ♦♦ 20
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