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bcftools consensus equivalent for VarScan output
assembly sequencing varscan written 5 weeks ago by RBright2110 • updated 5 weeks ago by Kevin Blighe71k
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Calling triovariants using varscan from a compressed mileup file ?
trio varscan samtools mpileup pipe written 7 weeks ago by dare_devil1.4k • updated 6 weeks ago by svp420
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What do R, Y, S, G... values mean in genotype column of output of VarScan?
varscan ngs snp written 7 weeks ago by biom.andressa10 • updated 7 weeks ago by zx875410.0k
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Problem Analyzing Tumor-Normal Pairs With Varscan
varscan next-gen samtools cancer written 8.6 years ago by tommivat240 • updated 5 months ago by Biostar ♦♦ 20
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question of varscan filter
varscan snp written 6 months ago by duolin110
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Using Samtools mpileup with Varscan
varscan next-gen samtools rna-seq written 5.6 years ago by Ron1.0k • updated 7 months ago by field65410
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include vcf header
varscan written 13 months ago by archie100
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Understanding the output of pileup2snp
variant samtools snp varscan written 19 months ago by e.rempel1000 • updated 17 months ago by Biostar ♦♦ 20
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VarScan.v2.4.3 generating incomplete or partial VCF file
variant calling exomeseq snp varscan written 19 months ago by Sandeep260 • updated 19 months ago by 2nelly260
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Using Varscan without a matched normal
varscan wes written 20 months ago by sugus60 • updated 20 months ago by Chris Miller21k
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Running time in different callers
varscan snv mutect wgs written 22 months ago by A3.9k
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Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 5.3 years ago by crawlthrutacos0 • updated 22 months ago by Biostar ♦♦ 20
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 4.3 years ago by Jerome Lin20 • updated 23 months ago by Biostar ♦♦ 20
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bam-readcount error Expect Library
varscan snp bam-readcount sequencing written 23 months ago by 9521ljh40 • updated 23 months ago by Pierre Lindenbaum134k
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How to annotate Copy Number Variations (Output of VarScan2)
varscan cnv annotation written 2.0 years ago by Rahil180 • updated 2.0 years ago by Pierre Lindenbaum134k
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VarScan: How is the DP score in a .vcf calculated?
vcf varscan written 2.1 years ago by James Reeve110 • updated 2.1 years ago by igor12k
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Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
cna varscan cnv snp written 2.3 years ago by Pin.Bioinf290 • updated 2.2 years ago by Biostar ♦♦ 20
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Work With Dnacopy (Bioconductor) And Varscan Copynumber Results
varscan bioconductor copynumber written 9.6 years ago by Mdeng510 • updated 2.3 years ago by noonbobnoon10
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