Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 124 results • page 1 of 5 • next >
4
votes
1
answer
136
views
1
answer
bcftools consensus equivalent for VarScan output
assembly sequencing varscan written 5 weeks ago by RBright21 • 10 • updated 5 weeks ago by Kevin Blighe ♦ 71k
9
votes
1
answer
112
views
9 follow
1
answer
Calling triovariants using varscan from a compressed mileup file ?
trio varscan samtools mpileup pipe written 7 weeks ago by dare_devil • 1.4k • updated 6 weeks ago by svp • 420
4
votes
1
answer
109
views
1
answer
What do R, Y, S, G... values mean in genotype column of output of VarScan?
varscan ngs snp written 7 weeks ago by biom.andressa • 10 • updated 7 weeks ago by zx8754 ♦ 10.0k
10
votes
0
answers
132
views
8 follow
0
answers
How to pipe samtools mileup with varscan trio caller?
varscan samtools pipe written 7 weeks ago by dare_devil • 1.4k
8
votes
1
answer
2.8k
views
1
answer
Problem Analyzing Tumor-Normal Pairs With Varscan
varscan next-gen samtools cancer written 8.6 years ago by tommivat • 240 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
281
views
0
answers
question of varscan filter
varscan snp written 6 months ago by duolin1 • 10
0
votes
2
answers
4.1k
views
2
answers
Using Samtools mpileup with Varscan
varscan next-gen samtools rna-seq written 5.6 years ago by Ron • 1.0k • updated 7 months ago by field654 • 10
0
votes
0
answers
181
views
0
answers
varscan - how to calculate MinMMQSdiff
varscan minmmqsdiff bam-readcount written 7 months ago by reany • 0
0
votes
0
answers
199
views
0
answers
ADR, ADF and dp4 counts do not count strands correct
lofreq varscan mutation sequencing written 9 months ago by g.t.los • 0
0
votes
0
answers
200
views
0
answers
include vcf header
varscan written 13 months ago by archie • 100
1
vote
2
answers
659
views
2
answers
Copy number profile using VarScan
varscan cnv_graph cnvs R written 16 months ago by tanbiswas6 • 0
0
votes
0
answers
301
views
0
answers
merge segment using varscan
varscan cnvs merge_segments written 16 months ago by tanbiswas6 • 0
0
votes
0
answers
389
views
0
answers
How rare are somatic mutations?
varscan tumor mutect snp somatic written 17 months ago by syntax • 60
0
votes
0
answers
464
views
0
answers
Understanding the output of pileup2snp
variant samtools snp varscan written 19 months ago by e.rempel • 1000 • updated 17 months ago by Biostar ♦♦ 20
1
vote
0
answers
297
views
0
answers
how generated haploid variants by varscan
indel varscan haploid snp written 18 months ago by kamel • 30
1
vote
1
answer
655
views
1
answer
VarScan.v2.4.3 generating incomplete or partial VCF file
variant calling exomeseq snp varscan written 19 months ago by Sandeep • 260 • updated 19 months ago by 2nelly • 260
4
votes
1
answer
674
views
1
answer
Using Varscan without a matched normal
varscan wes written 20 months ago by sugus • 60 • updated 20 months ago by Chris Miller ♦ 21k
0
votes
0
answers
549
views
0
answers
varscan tool for copy number variation detection
varscan next-gen sequencing written 20 months ago by nesmaabdelaziz60 • 0
0
votes
1
answer
541
views
1
answer
can VarScan2 do joint somatic calling?
varscan somatic calling snp written 22 months ago by Zoey Zou • 40
1
vote
0
answers
834
views
0
answers
Running time in different callers
varscan snv mutect wgs written 22 months ago by A • 3.9k
2
votes
2
answers
2.2k
views
2
answers
Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 5.3 years ago by crawlthrutacos • 0 • updated 22 months ago by Biostar ♦♦ 20
6
votes
1
answer
2.1k
views
1
answer
Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 4.3 years ago by Jerome Lin • 20 • updated 23 months ago by Biostar ♦♦ 20
0
votes
2
answers
487
views
2
answers
bam-readcount error Expect Library
varscan snp bam-readcount sequencing written 23 months ago by 9521ljh • 40 • updated 23 months ago by Pierre Lindenbaum ♦ 134k
4
votes
0
answers
2.1k
views
0
answers
Problem in converting vcf to maf using vcf2maf tools
varscan grch38 vcf2maf written 2.0 years ago by Rahil • 180
2
votes
1
answer
710
views
1
answer
How to annotate Copy Number Variations (Output of VarScan2)
varscan cnv annotation written 2.0 years ago by Rahil • 180 • updated 2.0 years ago by Pierre Lindenbaum ♦ 134k
2
votes
1
answer
1.0k
views
1
answer
VarScan: How is the DP score in a .vcf calculated?
vcf varscan written 2.1 years ago by James Reeve • 110 • updated 2.1 years ago by igor ♦ 12k
3
votes
1
answer
635
views
1
answer
Can a normal tissue sequence be used for various tumor samples in Varscan Somatic or GATK MuTect2?
gatk varscan mutect2 written 2.1 years ago by tarekzakaria.badr • 30 • updated 2.1 years ago by Charles Warden ♦ 8.0k
0
votes
0
answers
450
views
0
answers
Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
cna varscan cnv snp written 2.3 years ago by Pin.Bioinf • 290 • updated 2.2 years ago by Biostar ♦♦ 20
11
votes
1
answer
7.3k
views
8 follow
1
answer
Work With Dnacopy (Bioconductor) And Varscan Copynumber Results
varscan bioconductor copynumber written 9.6 years ago by Mdeng • 510 • updated 2.3 years ago by noonbobnoon • 10
0
votes
0
answers
592
views
0
answers
Error in normalizing lines of sequence in a fasta file using NormalizeFasta (Picard)
normalizefasta picard bam-readcount varscan written 2.3 years ago by Rahil • 180
<prev • 124 results • page 1 of 5 • next >
Recent Votes
Recent Locations • All »
  • United States, just now
  • London, just now
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2094 users visited in the last hour
_