Showing: varscanreset
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VarScan: How is the DP score in a .vcf calculated?
vcf varscan written 26 days ago by James Reeve50 • updated 26 days ago by igor7.3k
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Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
cna varscan cnv snp written 11 weeks ago by Pin.Bioinf230 • updated 9 weeks ago by Biostar ♦♦ 20
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Work With Dnacopy (Bioconductor) And Varscan Copynumber Results
varscan bioconductor copynumber written 7.6 years ago by Mdeng510 • updated 11 weeks ago by noonbobnoon10
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Problem understanding GT from Varscan's vcf output
varscan written 3 months ago by ww22runner0 • updated 3 months ago by RamRS20k
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 21 months ago by mar.ark.parr30 • updated 4 months ago by aliz06110
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How to get "normal.pileup" file for varscan somatic calling
varscan written 5 months ago by aadam354110 • updated 5 months ago by ATpoint13k
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Losing somatic SNPs
varscan snp varaft written 7 months ago by gab20 • updated 6 months ago by Biostar ♦♦ 20
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Varscan fpfilter error
varscan snp fpfilter bam-readcount somatic written 7 months ago by a0103901238710 • updated 7 months ago by RamRS20k
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Copy number variation detection
varscan copy number variation snp written 9 months ago by v2710 • updated 9 months ago by d-cameron2.0k
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SNP/indel annotation in Arabidopsis
indel varscan arabidopsis snp written 10 months ago by Federico Giorgi450 • updated 10 months ago by finswimmer10.0k
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identifying TP53 germline mutations which are also in tumor cells.
somatic germline tp53 mutect varscan written 12 months ago by lait120 • updated 12 months ago by Noushin N530
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varscan copy number error
varscan cnv written 14 months ago by mittu1602150
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Why CNV calling using VarScan need two steps of fragments merging?
varscan copy number variant cnv written 14 months ago by CY270 • updated 14 months ago by arta540
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Variant Calling in Low-Complexity Regions
indel low-complexity variants snp varscan written 16 months ago by ATpoint13k • updated 15 months ago by Biostar ♦♦ 20
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Running THetA2 with Varscan input?
varscan theta tumorpurity written 20 months ago by hshah20 • updated 16 months ago by j.p.albrecht30
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VarScan2 Parsing Error
varscan java written 17 months ago by ATpoint13k
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Tool: Varscan: Variant Detection In Massively Parallel Sequencing Data
indel varscan tool snp written 6.8 years ago by Istvan Albert ♦♦ 79k • updated 18 months ago by AcademicDialysis60
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