Showing: varscanreset
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How to exclude noisy CNV from study?
dnacopy varscan copy number variation cnv wes written 6 weeks ago by rmateos.110 • updated 14 days ago by vchris_ngs2.9k
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Problems After Loading Varscan 2 Output Into Bioconductor.Dnacopy
exome varscan copynumber cnv sequencing written 4.1 years ago by sousuffer20 • updated 16 days ago by Biostar ♦♦ 10
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varscan2 mpileup2snp output contains indels
vcf indels mpileup2snp varscan written 13 months ago by AW280 • updated 9 weeks ago by Biostar ♦♦ 10
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What allele frequency threshold do you recommend?
varscan written 4 months ago by agata88480 • updated 11 weeks ago by Biostar ♦♦ 10
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Exome-seq; Which tools to predict significantly muated genes .
varscan music cnv written 6 months ago by Chirag Nepal1.8k • updated 5 months ago by Biostar ♦♦ 10
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 5 months ago by Jerome Lin10 • updated 5 months ago by harold.smith.tarheel3.5k
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Varscan mpileup2snp coverage filter
mpileup2snp varscan written 5 months ago by AW280
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Variant Calling in Somatic mode
vcf varscan variants snp sequencing written 6 months ago by Paul500 • updated 6 months ago by venu3.5k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 6 months ago by lyan.liu0 • updated 6 months ago by Chris Miller18k
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indel preprocessing prior to bam-readcount
indel varscan fpfilter.pl bam-readcount written 7 months ago by Jokhe40 • updated 6 months ago by m.b0
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Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 17 months ago by crawlthrutacos0 • updated 8 months ago by Alex Reynolds18k
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VarScan and Samtools - how to process my data?
varscan ngs sequencing samtools pipeline written 9 months ago by aagata.szymanek10 • updated 9 months ago by poisonAlien2.2k
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Varscan Somatic...Syntax To Run With Redirect?
varscan samtools written 5.9 years ago by Hmm490 • updated 20 months ago by Biostar ♦♦ 10
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Using Samtools mpileup with Varscan
varscan next-gen samtools rna-seq written 21 months ago by Ron540 • updated 21 months ago by Charles Warden4.7k
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