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<prev • 117 results • page 1 of 4 • next >
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include vcf header
varscan written 7 weeks ago by archie • 90
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234
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Copy number profile using VarScan
varscan cnv_graph cnvs R written 4 months ago by tanbiswas6 • 0
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120
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merge segment using varscan
varscan cnvs merge_segments written 4 months ago by tanbiswas6 • 0
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202
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How rare are somatic mutations?
varscan tumor mutect snp somatic written 5 months ago by syntax • 60
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268
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Understanding the output of pileup2snp
variant samtools snp varscan written 8 months ago by e.rempel • 800 • updated 6 months ago by Biostar ♦♦ 20
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how generated haploid variants by varscan
indel varscan haploid snp written 6 months ago by kamel • 30
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302
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1
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VarScan.v2.4.3 generating incomplete or partial VCF file
variant calling exomeseq snp varscan written 8 months ago by Sandeep • 260 • updated 8 months ago by 2nelly • 180
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1
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304
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1
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Using Varscan without a matched normal
varscan wes written 8 months ago by sugus • 40 • updated 8 months ago by Chris Miller ♦ 21k
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285
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varscan tool for copy number variation detection
varscan next-gen sequencing written 9 months ago by nesmaabdelaziz60 • 0
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1
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320
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can VarScan2 do joint somatic calling?
varscan somatic calling snp written 11 months ago by Zoey Zou • 40
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437
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Running time in different callers
varscan snv mutect wgs written 11 months ago by A • 3.7k
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Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 4.4 years ago by crawlthrutacos • 0 • updated 11 months ago by Biostar ♦♦ 20
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1.9k
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1
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 3.4 years ago by Jerome Lin • 20 • updated 12 months ago by Biostar ♦♦ 20
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302
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bam-readcount error Expect Library
varscan snp bam-readcount sequencing written 12 months ago by 9521ljh • 10 • updated 12 months ago by Pierre Lindenbaum ♦ 127k
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889
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Problem in converting vcf to maf using vcf2maf tools
varscan grch38 vcf2maf written 13 months ago by Raheleh • 140
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444
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1
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How to annotate Copy Number Variations (Output of VarScan2)
varscan cnv annotation written 13 months ago by Raheleh • 140 • updated 13 months ago by Pierre Lindenbaum ♦ 127k
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1
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643
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1
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VarScan: How is the DP score in a .vcf calculated?
vcf varscan written 14 months ago by James Reeve • 100 • updated 14 months ago by igor ♦ 9.8k
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1
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452
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1
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Can a normal tissue sequence be used for various tumor samples in Varscan Somatic or GATK MuTect2?
gatk varscan mutect2 written 14 months ago by tarekzakaria.badr • 30 • updated 14 months ago by Charles Warden ♦ 7.6k
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Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
cna varscan cnv snp written 16 months ago by Pin.Bioinf • 270 • updated 15 months ago by Biostar ♦♦ 20
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8 follow
1
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Work With Dnacopy (Bioconductor) And Varscan Copynumber Results
varscan bioconductor copynumber written 8.7 years ago by Mdeng • 510 • updated 16 months ago by noonbobnoon • 10
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394
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Error in normalizing lines of sequence in a fasta file using NormalizeFasta (Picard)
normalizefasta picard bam-readcount varscan written 16 months ago by Raheleh • 140
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641
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Finding somatic and germline variations in tumor samples with matched ones (paired-end, illumina)
varscan wes data mpileup file written 16 months ago by Raheleh • 140 • updated 16 months ago by ATpoint ♦ 31k
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502
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Problem understanding GT from Varscan's vcf output
varscan written 17 months ago by ww22runner • 0 • updated 17 months ago by RamRS ♦ 26k
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1
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451
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1
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How to Interpret Deletions from varscan?
variants varscan indels alignment deletion written 17 months ago by athulmenonk • 0
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1
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618
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1
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Calling somatic variants with Varscan
varscan written 18 months ago by ww22runner • 0
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 2.9 years ago by mar.ark.parr • 40 • updated 18 months ago by aliz0611 • 0
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445
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Varscan read count output conversion
varscan written 18 months ago by shubhra.bhattacharya • 120
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1
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653
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1
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How to get "normal.pileup" file for varscan somatic calling
varscan written 19 months ago by aadam35411 • 0 • updated 19 months ago by ATpoint ♦ 31k
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0
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426
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Losing somatic SNPs
varscan snp varaft written 20 months ago by gab • 20 • updated 19 months ago by Biostar ♦♦ 20
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1
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993
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1
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How to keep sample name while using samtools mpileup + varscan to do variant call?
varscan samtools mpileup written 21 months ago by MatthewP • 410 • updated 21 months ago by Pierre Lindenbaum ♦ 127k
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