Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 119 results • page 1 of 4 • next >
0
votes
0
answers
55
views
0
answers
varscan - how to calculate MinMMQSdiff
varscan minmmqsdiff bam-readcount written 18 days ago by reany • 0
0
votes
0
answers
87
views
0
answers
ADR, ADF and dp4 counts do not count strands correct
lofreq varscan mutation sequencing written 8 weeks ago by g.t.los • 0
0
votes
0
answers
129
views
0
answers
include vcf header
varscan written 5 months ago by archie • 90
1
vote
2
answers
382
views
2
answers
Copy number profile using VarScan
varscan cnv_graph cnvs R written 8 months ago by tanbiswas6 • 0
0
votes
0
answers
198
views
0
answers
merge segment using varscan
varscan cnvs merge_segments written 9 months ago by tanbiswas6 • 0
0
votes
0
answers
282
views
0
answers
How rare are somatic mutations?
varscan tumor mutect snp somatic written 9 months ago by syntax • 60
0
votes
0
answers
342
views
0
answers
Understanding the output of pileup2snp
variant samtools snp varscan written 12 months ago by e.rempel • 890 • updated 10 months ago by Biostar ♦♦ 20
1
vote
0
answers
207
views
0
answers
how generated haploid variants by varscan
indel varscan haploid snp written 11 months ago by kamel • 30
1
vote
1
answer
407
views
1
answer
VarScan.v2.4.3 generating incomplete or partial VCF file
variant calling exomeseq snp varscan written 12 months ago by Sandeep • 260 • updated 12 months ago by 2nelly • 190
4
votes
1
answer
453
views
1
answer
Using Varscan without a matched normal
varscan wes written 12 months ago by sugus • 50 • updated 12 months ago by Chris Miller ♦ 21k
0
votes
0
answers
374
views
0
answers
varscan tool for copy number variation detection
varscan next-gen sequencing written 13 months ago by nesmaabdelaziz60 • 0
0
votes
1
answer
411
views
1
answer
can VarScan2 do joint somatic calling?
varscan somatic calling snp written 15 months ago by Zoey Zou • 40
1
vote
0
answers
609
views
0
answers
Running time in different callers
varscan snv mutect wgs written 15 months ago by A • 3.8k
2
votes
2
answers
2.0k
views
2
answers
Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 4.8 years ago by crawlthrutacos • 0 • updated 15 months ago by Biostar ♦♦ 20
6
votes
1
answer
2.0k
views
1
answer
Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 3.7 years ago by Jerome Lin • 20 • updated 16 months ago by Biostar ♦♦ 20
0
votes
2
answers
373
views
2
answers
bam-readcount error Expect Library
varscan snp bam-readcount sequencing written 16 months ago by 9521ljh • 20 • updated 16 months ago by Pierre Lindenbaum ♦ 129k
4
votes
0
answers
1.2k
views
0
answers
Problem in converting vcf to maf using vcf2maf tools
varscan grch38 vcf2maf written 17 months ago by Rahil • 150
2
votes
1
answer
552
views
1
answer
How to annotate Copy Number Variations (Output of VarScan2)
varscan cnv annotation written 17 months ago by Rahil • 150 • updated 17 months ago by Pierre Lindenbaum ♦ 129k
2
votes
1
answer
795
views
1
answer
VarScan: How is the DP score in a .vcf calculated?
vcf varscan written 18 months ago by James Reeve • 100 • updated 18 months ago by igor ♦ 11k
3
votes
1
answer
520
views
1
answer
Can a normal tissue sequence be used for various tumor samples in Varscan Somatic or GATK MuTect2?
gatk varscan mutect2 written 18 months ago by tarekzakaria.badr • 30 • updated 18 months ago by Charles Warden ♦ 7.8k
0
votes
0
answers
381
views
0
answers
Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
cna varscan cnv snp written 20 months ago by Pin.Bioinf • 270 • updated 19 months ago by Biostar ♦♦ 20
11
votes
1
answer
7.0k
views
8 follow
1
answer
Work With Dnacopy (Bioconductor) And Varscan Copynumber Results
varscan bioconductor copynumber written 9.0 years ago by Mdeng • 510 • updated 20 months ago by noonbobnoon • 10
0
votes
0
answers
463
views
0
answers
Error in normalizing lines of sequence in a fasta file using NormalizeFasta (Picard)
normalizefasta picard bam-readcount varscan written 20 months ago by Rahil • 150
1
vote
1
answer
722
views
1
answer
Finding somatic and germline variations in tumor samples with matched ones (paired-end, illumina)
varscan wes data mpileup file written 21 months ago by Rahil • 150 • updated 21 months ago by ATpoint ♦ 36k
0
votes
0
answers
572
views
0
answers
Problem understanding GT from Varscan's vcf output
varscan written 21 months ago by ww22runner • 0 • updated 21 months ago by RamRS ♦ 28k
1
vote
1
answer
534
views
1
answer
How to Interpret Deletions from varscan?
variants varscan indels alignment deletion written 21 months ago by athulmenonk • 0
2
votes
1
answer
731
views
1
answer
Calling somatic variants with Varscan
varscan written 22 months ago by ww22runner • 0
2
votes
2
answers
2.2k
views
2
answers
SciClone on WES data
dnacopy varscan clonality wes sciclone written 3.2 years ago by mar.ark.parr • 40 • updated 22 months ago by aliz0611 • 0
1
vote
0
answers
514
views
0
answers
Varscan read count output conversion
varscan written 22 months ago by shubhra.bhattacharya • 120
0
votes
1
answer
738
views
1
answer
How to get "normal.pileup" file for varscan somatic calling
varscan written 23 months ago by aadam35411 • 0 • updated 23 months ago by ATpoint ♦ 36k
<prev • 119 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • United States, just now
  • United States, 1 minute ago
  • UCLA, 2 minutes ago
  • University of Virginia, 4 minutes ago
  • Sweden, 6 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1319 users visited in the last hour