Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: varscan • reset
or   Classic search
<prev • 99 results • page 1 of 4 • next >
0
votes
1
answer
90
views
1
answer
Finding somatic and germline variations in tumor samples with matched ones (paired-end, illumina)
varscan wes data mpileup file written 1 day ago by R.A. • 40 • updated 1 day ago by ATpoint ♦ 9.1k
0
votes
0
answers
87
views
0
answers
Problem understanding GT from Varscan's vcf output
varscan written 18 days ago by ww22runner • 0 • updated 18 days ago by RamRS ♦ 19k
1
vote
1
answer
82
views
1
answer
How to Interpret Deletions from varscan?
variants varscan indels alignment deletion written 27 days ago by athulmenonk • 0
2
votes
1
answer
126
views
1
answer
Calling somatic variants with Varscan
varscan written 4 weeks ago by ww22runner • 0
1
vote
2
answers
1.2k
views
2
answers
SciClone on WES data
dnacopy varscan clonality wes sciclone written 18 months ago by mar.ark.parr • 30 • updated 5 weeks ago by aliz0611 • 0
1
vote
0
answers
95
views
0
answers
Varscan read count output conversion
varscan written 6 weeks ago by shubhra.bhattacharya • 70
0
votes
1
answer
194
views
1
answer
How to get "normal.pileup" file for varscan somatic calling
varscan written 10 weeks ago by aadam35411 • 0 • updated 10 weeks ago by ATpoint ♦ 9.1k
2
votes
0
answers
206
views
0
answers
Losing somatic SNPs
varscan snp varaft written 3 months ago by gab • 20 • updated 11 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
255
views
1
answer
How to keep sample name while using samtools mpileup + varscan to do variant call?
varscan samtools mpileup written 4 months ago by MatthewP • 20 • updated 4 months ago by Pierre Lindenbaum ♦ 114k
1
vote
0
answers
277
views
0
answers
Varscan fpfilter error
varscan snp fpfilter bam-readcount somatic written 4 months ago by a01039012387 • 10 • updated 4 months ago by RamRS ♦ 19k
0
votes
0
answers
170
views
0
answers
Why VarScan always get more somatic variants than other caller
varscan variant written 4 months ago by CY • 210
10
votes
2
answers
5.8k
views
7 follow
2
answers
Work With Dnacopy (Bioconductor) And Varscan Copynumber Results
varscan bioconductor copynumber written 7.3 years ago by Mdeng • 510 • updated 5 months ago by Kinga27 • 0
1
vote
0
answers
227
views
0
answers
Varscan somatic caller - Genotype calls
varscan somatic written 5 months ago by hshah • 20
1
vote
1
answer
294
views
5 follow
1
answer
Copy number variation detection
varscan copy number variation snp written 5 months ago by v27 • 10 • updated 5 months ago by d-cameron • 1.9k
0
votes
0
answers
214
views
0
answers
varscan somatic without normal
varscan mutation written 6 months ago by fabbri.marco • 0
5
votes
1
answer
270
views
1
answer
SNP/indel annotation in Arabidopsis
indel varscan arabidopsis snp written 6 months ago by Federico Giorgi • 420 • updated 6 months ago by finswimmer ♦ 6.7k
3
votes
1
answer
282
views
1
answer
identifying TP53 germline mutations which are also in tumor cells.
somatic germline tp53 mutect varscan written 9 months ago by lait • 120 • updated 9 months ago by Noushin N • 530
1
vote
0
answers
409
views
0
answers
varscan copy number error
varscan cnv written 11 months ago by mittu1602 • 150
1
vote
1
answer
387
views
1
answer
Why CNV calling using VarScan need two steps of fragments merging?
varscan copy number variant cnv written 11 months ago by CY • 210 • updated 11 months ago by arta • 540
0
votes
0
answers
446
views
0
answers
phasing variants produced by varscan
gatk trio analysis varscan phasing variants written 11 months ago by lait • 120
0
votes
0
answers
446
views
0
answers
Correcting SNV allele frequency
wgs varscan snv allele frequency written 12 months ago by ATpoint ♦ 9.1k
0
votes
0
answers
407
views
0
answers
does varscan2 trio mode perform joint genotyoing?
trio varscan joint genotyping variant germline written 12 months ago by lait • 120
4
votes
0
answers
727
views
0
answers
Variant Calling in Low-Complexity Regions
indel low-complexity variants snp varscan written 13 months ago by ATpoint ♦ 9.1k • updated 12 months ago by Biostar ♦♦ 20
5
votes
1
answer
539
views
1
answer
Running THetA2 with Varscan input?
varscan theta tumorpurity written 17 months ago by hshah • 20 • updated 13 months ago by j.p.albrecht • 30
2
votes
1
answer
638
views
1
answer
VarScan2 Parsing Error
varscan java written 14 months ago by ATpoint ♦ 9.1k
3
votes
0
answers
2.1k
views
0
answers
Tool: Varscan: Variant Detection In Massively Parallel Sequencing Data
indel varscan tool snp written 6.5 years ago by Istvan Albert ♦♦ 78k • updated 15 months ago by AcademicDialysis • 60
0
votes
0
answers
444
views
0
answers
Galaxy VarScan SNP size and stderr
varscan galaxy variant bam written 16 months ago by louis.gil007 • 0
0
votes
1
answer
1.3k
views
1
answer
varscan v2.3.9 filter Parse exception
varscan written 2.5 years ago by cafelumiere12 • 70 • updated 18 months ago by jlx0248 • 0
1
vote
1
answer
566
views
1
answer
How to exclude noisy CNV from study?
dnacopy varscan copy number variation cnv wes written 20 months ago by rmateos.1 • 10 • updated 19 months ago by vchris_ngs • 4.5k
1
vote
2
answers
2.5k
views
2
answers
Problems After Loading Varscan 2 Output Into Bioconductor.Dnacopy
exome varscan copynumber cnv sequencing written 5.7 years ago by sousuffer • 20 • updated 19 months ago by Biostar ♦♦ 20
<prev • 99 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • Thrissur, 1 minute ago
  • Germany, 3 minutes ago
  • Chittagong, 3 minutes ago
  • Pakistan, 5 minutes ago
  • Pune, India, 6 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1201 users visited in the last hour