Showing: varscanreset
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varscan2 mpileup2snp output contains indels
vcf indels mpileup2snp varscan written 11 months ago by AW250 • updated 12 days ago by Biostar ♦♦ 10
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What allele frequency threshold do you recommend?
varscan written 10 weeks ago by agata88440 • updated 24 days ago by Biostar ♦♦ 10
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Exome-seq; Which tools to predict significantly muated genes .
varscan music cnv written 4 months ago by Chirag Nepal1.7k • updated 3 months ago by Biostar ♦♦ 10
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 3 months ago by Jerome Lin10 • updated 3 months ago by harold.smith.tarheel3.5k
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Varscan mpileup2snp coverage filter
mpileup2snp varscan written 3 months ago by AW250
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Variant Calling in Somatic mode
vcf varscan variants snp sequencing written 4 months ago by Paul490 • updated 4 months ago by venu3.3k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 4 months ago by lyan.liu0 • updated 4 months ago by Chris Miller17k
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indel preprocessing prior to bam-readcount
indel varscan fpfilter.pl bam-readcount written 5 months ago by Jokhe40 • updated 4 months ago by m.b0
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Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 16 months ago by crawlthrutacos0 • updated 6 months ago by Alex Reynolds17k
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VarScan and Samtools - how to process my data?
varscan ngs sequencing samtools pipeline written 7 months ago by aagata.szymanek10 • updated 7 months ago by poisonAlien2.2k
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Varscan Somatic...Syntax To Run With Redirect?
varscan samtools written 5.7 years ago by Hmm490 • updated 18 months ago by Biostar ♦♦ 10
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Using Samtools mpileup with Varscan
varscan next-gen samtools rna-seq written 19 months ago by Ron500 • updated 19 months ago by Charles Warden4.6k
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VCF format: indel with two reference alleles
vcf gatk varscan written 23 months ago by philip.jonsson30 • updated 23 months ago by Pierre Lindenbaum89k
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Varscan 2 output
varscan varscan 2 next-gen written 24 months ago by senowinski10 • updated 24 months ago by poisonAlien2.2k
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