Showing: varscanreset
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Running time in different callers
varscan snv mutect wgs written 7 weeks ago by F3.4k
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Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 3.6 years ago by crawlthrutacos0 • updated 8 weeks ago by Biostar ♦♦ 20
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 2.6 years ago by Jerome Lin20 • updated 10 weeks ago by Biostar ♦♦ 20
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bam-readcount error Expect Library
varscan snp bam-readcount sequencing written 11 weeks ago by 9521ljh10 • updated 11 weeks ago by Pierre Lindenbaum120k
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How to annotate Copy Number Variations (Output of VarScan2)
varscan cnv annotation written 3 months ago by Raheleh70 • updated 3 months ago by Pierre Lindenbaum120k
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VarScan: How is the DP score in a .vcf calculated?
vcf varscan written 4 months ago by James Reeve80 • updated 4 months ago by igor7.7k
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Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
cna varscan cnv snp written 6 months ago by Pin.Bioinf250 • updated 6 months ago by Biostar ♦♦ 20
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Work With Dnacopy (Bioconductor) And Varscan Copynumber Results
varscan bioconductor copynumber written 7.9 years ago by Mdeng520 • updated 6 months ago by noonbobnoon10
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Problem understanding GT from Varscan's vcf output
varscan written 7 months ago by ww22runner0 • updated 7 months ago by RamRS22k
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 2.1 years ago by mar.ark.parr30 • updated 8 months ago by aliz06110
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How to get "normal.pileup" file for varscan somatic calling
varscan written 9 months ago by aadam354110 • updated 9 months ago by ATpoint17k
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Losing somatic SNPs
varscan snp varaft written 10 months ago by gab20 • updated 10 months ago by Biostar ♦♦ 20
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Varscan fpfilter error
varscan snp fpfilter bam-readcount somatic written 11 months ago by a0103901238710 • updated 11 months ago by RamRS22k
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Copy number variation detection
varscan copy number variation snp written 13 months ago by v2710 • updated 13 months ago by d-cameron2.0k
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SNP/indel annotation in Arabidopsis
indel varscan arabidopsis snp written 14 months ago by Federico Giorgi490 • updated 14 months ago by finswimmer11k
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identifying TP53 germline mutations which are also in tumor cells.
somatic germline tp53 mutect varscan written 16 months ago by lait130 • updated 16 months ago by Noushin N550
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varscan copy number error
varscan cnv written 18 months ago by mittu1602150
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Why CNV calling using VarScan need two steps of fragments merging?
varscan copy number variant cnv written 18 months ago by CY370 • updated 18 months ago by arta540
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