Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: varscan • reset
or   Classic search
<prev • 77 results • page 1 of 3 • next >
0
votes
0
answers
111
views
0
answers
Galaxy VarScan SNP size and stderr
varscan galaxy variant bam written 9 days ago by louis.gil007 • 0
1
vote
1
answer
219
views
1
answer
SciClone on WES data
dnacopy varscan clonality wes sciclone written 10 weeks ago by mar.ark.parr • 30 • updated 6 weeks ago by Chris Miller ♦ 18k
0
votes
0
answers
97
views
0
answers
Running THetA2 with Varscan input?
varscan theta tumorpurity written 6 weeks ago by hshah • 0
0
votes
1
answer
632
views
1
answer
varscan v2.3.9 filter Parse exception
varscan written 14 months ago by cafelumiere12 • 70 • updated 11 weeks ago by jlx0248 • 0
1
vote
1
answer
256
views
1
answer
How to exclude noisy CNV from study?
dnacopy varscan copy number variation cnv wes written 4 months ago by rmateos.1 • 10 • updated 3 months ago by vchris_ngs • 3.6k
1
vote
2
answers
1.9k
views
2
answers
Problems After Loading Varscan 2 Output Into Bioconductor.Dnacopy
exome varscan copynumber cnv sequencing written 4.4 years ago by sousuffer • 20 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
250
views
0
answers
Varscan2 filters AND usability of the tool - looking for opinions
variant calling varscan varscan2 somatic written 4 months ago by user230613 • 240
0
votes
0
answers
146
views
0
answers
How to interpret tandem SNP in
varscan ngs dna-seq variants written 4 months ago by Paul • 620
0
votes
0
answers
232
views
0
answers
varscan somaticFilter thinks all my variants are near INDELS so removes all of them
varscan somaticfilter false-positive filtering written 4 months ago by wes3985 • 0
1
vote
0
answers
561
views
0
answers
varscan2 mpileup2snp output contains indels
vcf indels mpileup2snp varscan written 16 months ago by AW • 280 • updated 5 months ago by Biostar ♦♦ 20
2
votes
0
answers
382
views
0
answers
What allele frequency threshold do you recommend?
varscan written 7 months ago by agata88 • 600 • updated 5 months ago by Biostar ♦♦ 20
1
vote
0
answers
300
views
0
answers
How to annotate VarScan software .snp output to see what genes have SNPs and how to make a human-readable report from that?
varscan annotation written 5 months ago by flight22121 • 10
0
votes
1
answer
314
views
1
answer
Different output from pileup and mpileup commands VarScan
varscan mpileup written 6 months ago by agata88 • 600
0
votes
0
answers
230
views
0
answers
How to output VarsScan variant calling results in a .tab or txt/csv file?
varscan variant calling samtools written 6 months ago by vassialkalive23 • 0
0
votes
0
answers
452
views
0
answers
What is genotype quality scale?
varscan quality genotype written 7 months ago by agata88 • 600
4
votes
0
answers
521
views
0
answers
Exome-seq; Which tools to predict significantly muated genes .
varscan music cnv written 9 months ago by Chirag Nepal • 1.9k • updated 8 months ago by Biostar ♦♦ 20
6
votes
1
answer
477
views
1
answer
Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 8 months ago by Jerome Lin • 20 • updated 8 months ago by harold.smith.tarheel • 3.7k
0
votes
0
answers
206
views
0
answers
Varscan mpileup2snp coverage filter
mpileup2snp varscan written 8 months ago by AW • 280
0
votes
0
answers
328
views
0
answers
Varscan mpileup2snp parameters
mpileup2snp varscan snpcalling written 8 months ago by AW • 280
13
votes
1
answer
470
views
1
answer
Variant Calling in Somatic mode
vcf varscan variants snp sequencing written 9 months ago by Paul • 620 • updated 9 months ago by venu • 4.0k
0
votes
1
answer
574
views
1
answer
sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 9 months ago by lyan.liu • 0 • updated 9 months ago by Chris Miller ♦ 18k
0
votes
1
answer
572
views
1
answer
indel preprocessing prior to bam-readcount
indel varscan fpfilter.pl bam-readcount written 9 months ago by Jokhe • 40 • updated 9 months ago by m.b • 0
0
votes
2
answers
719
views
2
answers
Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 20 months ago by crawlthrutacos • 0 • updated 11 months ago by Alex Reynolds ♦ 19k
0
votes
0
answers
407
views
0
answers
a problem with varscan
software error varscan samtools mpileup written 11 months ago by ZoeChing • 0
2
votes
1
answer
993
views
1
answer
VarScan and Samtools - how to process my data?
varscan ngs sequencing samtools pipeline written 12 months ago by ciemanek • 20 • updated 12 months ago by poisonAlien • 2.3k
2
votes
0
answers
526
views
0
answers
Clear explanation of parameter minReads2 in VarScan
vcf varscan sequencing written 12 months ago by John • 50
0
votes
0
answers
490
views
0
answers
Varscan variant calll error on pacbio data
varscan blasr mpileup pacbio written 13 months ago by mark.rose • 10
10
votes
2
answers
976
views
2
answers
Non-cancer somatic mutation calling
varscan samtools somatic mutations mutect gatk written 14 months ago by Helene • 370
0
votes
0
answers
431
views
0
answers
Variant Calling output problem GL000 contigs
vardict freebayes mutect varscan written 15 months ago by morovatunc • 360
2
votes
1
answer
1.1k
views
1
answer
How To Find Cnvs Common To Both Of The Responders (Overlapping Regions) From Varscan Output
varscan copynumber sequencing written 4.3 years ago by sousuffer • 20 • updated 22 months ago by Biostar ♦♦ 20
<prev • 77 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • United States, just now
  • Japan, 2 minutes ago
  • hyderabad india, 2 minutes ago
  • Freiburg, Germany, 3 minutes ago
  • Netherlands, 3 minutes ago
  • Serbia And Montenegro, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 901 users visited in the last hour