Showing: varscanreset
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Variant Calling in Low-Complexity Regions
indel low-complexity variants snp varscan written 6 weeks ago by ATPoint2.4k • updated 16 days ago by Biostar ♦♦ 20
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Running THetA2 with Varscan input?
varscan theta tumorpurity written 5 months ago by hshah20 • updated 7 weeks ago by j.p.albrecht30
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VarScan2 Parsing Error
varscan java written 10 weeks ago by ATPoint2.4k
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Tool: Varscan: Variant Detection In Massively Parallel Sequencing Data
indel varscan tool snp written 5.6 years ago by Istvan Albert ♦♦ 74k • updated 3 months ago by AcademicDialysis60
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 6 months ago by mar.ark.parr30 • updated 5 months ago by Chris Miller19k
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varscan v2.3.9 filter Parse exception
varscan written 18 months ago by cafelumiere1270 • updated 6 months ago by jlx02480
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How to exclude noisy CNV from study?
dnacopy varscan copy number variation cnv wes written 8 months ago by rmateos.110 • updated 7 months ago by vchris_ngs4.1k
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Problems After Loading Varscan 2 Output Into Bioconductor.Dnacopy
exome varscan copynumber cnv sequencing written 4.7 years ago by sousuffer20 • updated 7 months ago by Biostar ♦♦ 20
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varscan2 mpileup2snp output contains indels
vcf indels mpileup2snp varscan written 20 months ago by AW300 • updated 9 months ago by Biostar ♦♦ 20
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What allele frequency threshold do you recommend?
varscan written 11 months ago by agata88630 • updated 9 months ago by Biostar ♦♦ 20
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Exome-seq; Which tools to predict significantly muated genes .
varscan music cnv written 13 months ago by Chirag Nepal1.9k • updated 12 months ago by Biostar ♦♦ 20
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 12 months ago by Jerome Lin20 • updated 12 months ago by harold.smith.tarheel3.9k
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Varscan mpileup2snp coverage filter
mpileup2snp varscan written 12 months ago by AW300
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Variant Calling in Somatic mode
vcf varscan variants snp sequencing written 13 months ago by Paul930 • updated 13 months ago by venu4.5k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 13 months ago by lyan.liu0 • updated 13 months ago by Chris Miller19k
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indel preprocessing prior to bam-readcount
indel varscan fpfilter.pl bam-readcount written 14 months ago by Jokhe60 • updated 13 months ago by m.b0
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Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 2.1 years ago by crawlthrutacos0 • updated 15 months ago by Alex Reynolds21k
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VarScan and Samtools - how to process my data?
varscan ngs sequencing samtools pipeline written 16 months ago by ciemanek20 • updated 16 months ago by poisonAlien2.5k
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