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include vcf header
varscan written 7 weeks ago by archie90
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Understanding the output of pileup2snp
variant samtools snp varscan written 8 months ago by e.rempel800 • updated 6 months ago by Biostar ♦♦ 20
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VarScan.v2.4.3 generating incomplete or partial VCF file
variant calling exomeseq snp varscan written 8 months ago by Sandeep260 • updated 8 months ago by 2nelly180
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Using Varscan without a matched normal
varscan wes written 8 months ago by sugus40 • updated 8 months ago by Chris Miller21k
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Running time in different callers
varscan snv mutect wgs written 11 months ago by A3.7k
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Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 4.4 years ago by crawlthrutacos0 • updated 11 months ago by Biostar ♦♦ 20
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 3.4 years ago by Jerome Lin20 • updated 12 months ago by Biostar ♦♦ 20
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bam-readcount error Expect Library
varscan snp bam-readcount sequencing written 12 months ago by 9521ljh10 • updated 12 months ago by Pierre Lindenbaum127k
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How to annotate Copy Number Variations (Output of VarScan2)
varscan cnv annotation written 13 months ago by Raheleh140 • updated 13 months ago by Pierre Lindenbaum127k
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VarScan: How is the DP score in a .vcf calculated?
vcf varscan written 14 months ago by James Reeve100 • updated 14 months ago by igor9.8k
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Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
cna varscan cnv snp written 16 months ago by Pin.Bioinf270 • updated 15 months ago by Biostar ♦♦ 20
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Work With Dnacopy (Bioconductor) And Varscan Copynumber Results
varscan bioconductor copynumber written 8.7 years ago by Mdeng510 • updated 16 months ago by noonbobnoon10
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Problem understanding GT from Varscan's vcf output
varscan written 17 months ago by ww22runner0 • updated 17 months ago by RamRS26k
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 2.9 years ago by mar.ark.parr40 • updated 18 months ago by aliz06110
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How to get "normal.pileup" file for varscan somatic calling
varscan written 19 months ago by aadam354110 • updated 19 months ago by ATpoint31k
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Losing somatic SNPs
varscan snp varaft written 20 months ago by gab20 • updated 19 months ago by Biostar ♦♦ 20
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