Showing: vcfreset
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3
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192
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Best visual and interactive genotype matrix (VCF) exploration tool
vcf interactive bcftools visual written 16 days ago by William3.6k • updated 7 hours ago by willgilks130
12
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4
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911
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4
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Determine sex from vcf file (or sequencing data)
vcf variant genotyping written 9 months ago by kulvait160 • updated 12 hours ago by Biostar ♦♦ 10
4
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3
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645
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3
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How to filter vcf file on minimum genotype depth and quality for each sample
vcf bcftools written 7 months ago by William3.6k • updated 1 day ago by DragonDNA0
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1
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77
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1
answer
Calculate the b allele frequency from a VCF file
vcf frequency written 3 days ago by Maj0 • updated 2 days ago by jmzeng13140
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78
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0
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3
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Is there a tool to transform GenomeStudio genotype format to VCF?
vcf genomestudio written 2.7 years ago by Leonor Palmeira3.5k • updated 3 days ago by jmzeng13140
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1
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67
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1
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Intersecting vcf files with bedtools
bedtools vcf intersectbed written 4 days ago by Maj0 • updated 4 days ago by genomax222k
4
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2
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101
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Number of homozygous and heterozygous variants
vcf heterozygous genotype homozygous written 7 days ago by nkausthu0 • updated 5 days ago by Len Trigg660
8
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1
answer
93
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1
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How to sort VCF "chr1, chr2..."
vcf written 5 days ago by student-t330 • updated 5 days ago by Petr Ponomarenko700
4
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4
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105
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4
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How to conduct pathway analysis from VCF file?
vcf gatk exome seq written 9 days ago by David_emir160 • updated 8 days ago by Collin300
0
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1
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98
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1
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Visualize Mutation Frequency
vcf mutation data written 9 days ago by justinms0 • updated 9 days ago by igor3.4k
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1
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154
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1
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Genetic measures calculation in vcf files
vcf pi tajimad written 6 weeks ago by ricardo0 • updated 9 days ago by willgilks130
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1
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1.2k
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1
answer
0
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2
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Any better ways to filter GATK Mutect2 output?
vcf gatk mutect2 written 7 months ago by ShirleyDai20 • updated 10 days ago by igor3.4k
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0
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0
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varscan2 mpileup2snp output contains indels
vcf indels mpileup2snp varscan written 11 months ago by AW250 • updated 10 days ago by Biostar ♦♦ 10
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2
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88
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Why annotation doesn't respect VCF field schema ?
vcf annotation format variant specification written 10 days ago by sacha660 • updated 10 days ago by EnsemblWill450
2
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2
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228
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2
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How to "haploidize" diploid SNPs data in a vcf file
vcf ploidy snp written 14 days ago by BioinfoNovice50 • updated 11 days ago by Len Trigg660
0
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0
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71
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0
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1
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1
answer
600
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1
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filter multiple VCF files using snpSift
snpsift filter vcf written 16 months ago by jan50 • updated 13 days ago by Biostar ♦♦ 10
1
vote
1
answer
105
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1
answer
How to solve VT tools error on installation "no math.h" file?
installation vcf vt written 13 days ago by genome210 • updated 13 days ago by Alex Reynolds17k
2
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1
answer
79
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1
answer
Genome orientation, convention to begin at one end of a chromosome
genome vcf alignment written 15 days ago by Stingery0 • updated 14 days ago by Devon Ryan62k
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75
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0
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11
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4
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207
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6 follow
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3
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1
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660
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1
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Summarise genotypes in a VCF file
vcf genotypes written 17 months ago by Dave Tang120
0
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1
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170
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1
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How to access VCF files for Genotype Tissue Expression (GTEx) data
vcf snp gtex written 5 weeks ago by jparker40 • updated 19 days ago by Tao110
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0
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173
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0
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5
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2
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1.1k
views
6 follow
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Create a UCSC chain file from a VCF
genome vcf chain written 2.9 years ago by rubic110 • updated 20 days ago by Malcolm.Cook710
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0
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0
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128
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0
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1
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2
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283
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