Showing: vcfreset
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subseting VCF by bcftools
vcf bcftools written 2 days ago by miaowzai20 • updated 1 day ago by guillaume.rbt290
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DNA sequence of genes from vcf file
vcf variant calling bcftools gene ensembl written 16 days ago by bioinfo880 • updated 2 days ago by Whoknows580
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How find variants between 26 genes sequence
vcf command tool snp script written 3 days ago by misbahabas30 • updated 3 days ago by Sej Modha1.7k
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Filtering by specific genotype VCF
vcf filter genotype written 9 weeks ago by virpatel320 • updated 5 days ago by agata88610
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Merging BAM file before running GATK or merging vcf output
vcf gatk snp written 6 days ago by pbigbig180 • updated 6 days ago by Lila M 320
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sample order of the freebayes vcf output
vcf wes freebayes written 10 days ago by tangming20052.1k • updated 9 days ago by finswimmer340
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retrieving from ExAC in VCF format
vcf exac written 16 days ago by alessandrotestori7170 • updated 10 days ago by daniko0710
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Forum: User Friendly VCF Filtering Tools
variant calling vcf forum filtering written 14 months ago by andrew.j.skelton733.6k • updated 12 days ago by steven.n.hart20
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Is the DGRP data phased?
vcf next-gen vcftools dgrp written 11 weeks ago by mufernando0 • updated 13 days ago by Biostar ♦♦ 20
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Convert VCF dosage file into dosage only file
vcf dosage minimac written 17 days ago by dp0b20 • updated 14 days ago by trausch650
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GT field in VCF only has one number?
vcf written 15 days ago by Helene390
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Maximum Depth Filter
vcf filter maximum depth written 15 days ago by ATPoint660 • updated 15 days ago by Pierre Lindenbaum96k
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which is good haplotypecaller and UnifiedGenotyper?
vcf next-gen tool snp written 16 days ago by misbahabas30 • updated 16 days ago by cpad01121.7k
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PCA on VCF
vcf pca written 16 months ago by Picasa300 • updated 17 days ago by Biostar ♦♦ 20
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How to plot VCF missingness per sample (.imiss) and per variant (.lmiss) in python?
vcf qc plink vcftools written 5 months ago by William3.9k • updated 18 days ago by Biostar ♦♦ 20
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Is GATK overestimating the heterozygous calls?
vcf gatk heterozygous snp written 21 days ago by biobudhan10 • updated 21 days ago by andrew.j.skelton733.6k
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Which tool to calculate per site stats on vcf file?
vcf snp written 21 days ago by Ayité K10 • updated 21 days ago by rbagnall1.1k
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