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VCF file ID missing
vcf assembly snp wgs written 2 days ago by devarora150
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Where can I find GATK SNP calling VCF for NA12878 exome?
vcf gatk na12878 written 8 months ago by gerrybio20100 • updated 2 days ago by geocarvalho140
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Subsetting .vcf.gz based on .txt file
gene vcf genome snp sequencing written 3 days ago by chvbs20000 • updated 3 days ago by Yean100
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Split Vcf File Into Snps And Indels
vcf indel split snp gatk written 7.9 years ago by pablo.riesgo140 • updated 9 days ago by hsiaoyi050450
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Multisample VCF to FASTA
vcf fasta gatk written 9 days ago by gabri.mochales10 • updated 9 days ago by Kevin Blighe59k
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Count total number of Homozygous/Heterozygous SNPs from VCF file
vcf allele snp written 13 days ago by nataliagru140 • updated 13 days ago by colindaven2.2k
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SNP calling specific genes with GATK
vcf gatk target capture target-capture sequencing written 14 days ago by gabri.mochales10 • updated 14 days ago by bruce.moran790
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VCF-merge fails due to tabix not producing .tbi files
vcf vcf-merge tabix written 15 days ago by brallen10 • updated 14 days ago by Kevin Blighe59k
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Figure out genotype from VCF line
genome vcf snp written 15 days ago by imbiling10 • updated 14 days ago by zx87549.2k
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Read genotype information with VariantAnnotation
vcf R bioconductor snp variantannotation written 17 days ago by jeni10 • updated 16 days ago by benformatics1.6k
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Improve the speed of Haplotypecaller
vcf gatk haplotypecaller bam written 16 days ago by gabri.mochales10 • updated 16 days ago by Pierre Lindenbaum128k
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Understanding TCGA somatic mutation files
vcf tcga snps maf written 21 days ago by j.lunger1810 • updated 21 days ago by Kevin Blighe59k
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bcftools merge single-sample vcf files
vcf bcftools snp written 21 days ago by j.lunger1810 • updated 21 days ago by WouterDeCoster43k
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VEP outputs the similar INFO CSQ data multiple times
vcf tsv vep ensembl annotation written 22 days ago by magnolia0 • updated 22 days ago by Pierre Lindenbaum128k
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bcftools pipe generated file from first command with second
vcf bcftools pipe written 22 days ago by cocchi.e8950 • updated 22 days ago by Pierre Lindenbaum128k
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filter multisample VCF based on Altered AD values
vcf filter ad written 23 days ago by cocchi.e8950 • updated 23 days ago by Pierre Lindenbaum128k
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finding unique mutations from a multi-sample VCF
vcf snp written 3.1 years ago by firatuyulur300 • updated 23 days ago by Biostar ♦♦ 20
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GT 2/3, or 3/3 or 2/2 in vcf
vcf written 23 days ago by Tania120 • updated 23 days ago by Lemire570
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