Showing: vcfreset
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49
votes
0
answers
4.1k
views
45 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
vcf 1000 genomes tutorial pca plink written 12 months ago by Kevin Blighe28k • updated 21 days ago by genomax55k
40
votes
2
answers
7.4k
views
29 follow
2
answers
15
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5
answers
5.6k
views
17 follow
5
answers
41
votes
2
answers
15k
views
15 follow
2
answers
Phased And Unphased Genotypes In Vcf Files: Does The Order Of Alleles Matter?
vcf genotyping written 7.6 years ago by Chronos540 • updated 5.4 years ago by sliders50
52
votes
6
answers
25k
views
24 follow
6
answers
New Fasta Sequence From Reference Fasta And Variant Calls File?
vcf fasta consensus variant written 7.5 years ago by Gaffa490 • updated 22 months ago by FatihSarigol100
31
votes
2
answers
8.2k
views
10 follow
2
answers
How To Separate Snp Variants From Indel Variants In The Same Vcf File
vcf vcftools written 7.5 years ago by Jianfengmao310 • updated 7.5 years ago by Pierre Lindenbaum112k
47
votes
5
answers
30k
views
31 follow
5
answers
Extract Sub-Set Of Regions From Vcf File
vcf genome tabix filter written 6.3 years ago by Rubal7700 • updated 11 months ago by geocarvalho80
79
votes
4
answers
42k
views
24 follow
4
answers
Generate vcf.gz file and its index file vcf.gz.tbi
vcf tabix written 5.8 years ago by lyz10302012310 • updated 3 days ago by zx87545.0k
42
votes
6
answers
9.8k
views
13 follow
6
answers
20
votes
2
answers
6.0k
views
15 follow
2
answers
Best Discordant Pair Structural Variant (Sv) Caller?
vcf sv variant caller discordant written 5.1 years ago by William4.3k • updated 2.8 years ago by Malachi Griffith16k
23
votes
2
answers
12k
views
15 follow
2
answers
18
votes
5
answers
9.8k
views
10 follow
5
answers
How To Split A .Vcf.Gz File
vcf vcftools split written 7.6 years ago by Jorge Amigo11k
18
votes
2
answers
14k
views
8 follow
2
answers
How To Distinguish Heterozygotes And Homozygotes From Variants In Vcf Format?
vcf samtools written 7.0 years ago by Shinvkuo130 • updated 7.0 years ago by Swbarnes21.4k
25
votes
2
answers
10k
views
8 follow
2
answers
Recommendations For Python Vcf Parser/Writer?
vcf python variation variant written 6.7 years ago by Reece250 • updated 6.7 years ago by Erik Garrison2.1k
49
votes
4
answers
31k
views
29 follow
4
answers
Filtering Vcf File
vcf indel vcftools snp written 6.1 years ago by bioinfo680 • updated 11 months ago by DataFanatic100
20
votes
5
answers
12k
views
15 follow
5
answers
Comparing Genotypes In Two Vcf Files
vcf genotyping written 5.8 years ago by enza.colonna80 • updated 3.4 years ago by Anop Singh Ranawat0
16
votes
5
answers
15k
views
16 follow
5
answers
Combining Data Of Multiple Vcfs Into One.
vcf variant-calling written 5.3 years ago by Sheila240 • updated 5.3 years ago by zx87545.0k
17
votes
3
answers
11k
views
12 follow
3
answers
Gwas Stepwise Tutorial
vcf gwas ngs 1000genomes written 5.1 years ago by always_learning930
31
votes
6
answers
13k
views
23 follow
6
answers
Multi-Sample Vcf To Phylogenetic Tree.
vcf written 5.0 years ago by William4.3k • updated 23 months ago by Sergey Naumenko330
29
votes
4
answers
6.1k
views
10 follow
4
answers
Forum: Principles of Tidy Data (Hadley Wickham) and the VCF format
vcf data forum tidy written 3.8 years ago by Giovanni M Dall'Olio26k • updated 3.8 years ago by Alex Reynolds25k
17
votes
5
answers
2.7k
views
5
answers
17
votes
1
answer
17k
views
8 follow
1
answer
Dbsnp Vcf Data Corresponding To Hg19/Grch37 Assembly
exome vcf dbsnp hg written 7.4 years ago by Khader Shameer17k • updated 7.4 years ago by Brad Chapman9.2k
27
votes
4
answers
22k
views
13 follow
4
answers
Understanding Vcf File Format
vcf format written 6.8 years ago by Tryingtogetthere150 • updated 6.5 years ago by Jorge Amigo11k
6
votes
1
answer
1.8k
views
1
answer
17
votes
3
answers
6.1k
views
11 follow
3
answers
Introducing Known Mutations (From A Vcf) Into A Fasta File
vcf fasta next-gen mutation sequencing written 6.6 years ago by Travis2.8k • updated 5.2 years ago by Ashutosh Pandey11k
46
votes
3
answers
16k
views
29 follow
3
answers
Pca From Vcf Files
vcf genome pca written 6.4 years ago by Rubal7700 • updated 2.3 years ago by mkulecka300
25
votes
3
answers
16k
views
16 follow
3
answers
How Can I Count Snps In My Vcf Files?
vcf snp awk written 6.2 years ago by Matt W230 • updated 3.0 years ago by ravi.uhdnis140
47
votes
7
answers
30k
views
18 follow
7
answers
How Can I Merge A Large Amount Of Vcf Files?
vcf merge vcftools snp written 6.2 years ago by Matt W230 • updated 10 weeks ago by ATpoint7.5k
0
votes
0
answers
1.4k
views
0
answers
Visualizing Maf Of Variants From Vcf Over A Gene Structure
maf vcf visualization written 5.4 years ago by Khader Shameer17k • updated 5.2 years ago by Biostar ♦♦ 20
15
votes
4
answers
6.6k
views
15 follow
4
answers
Vcf File --> Gene/Protein Mutation Information
vcf annovar mutation written 5.2 years ago by newDNASeqer600 • updated 5.2 years ago by Alex Paciorkowski3.3k
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