Showing: vcfreset
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49
votes
0
answers
5.2k
views
45 follow
0
answers
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
vcf 1000 genomes tutorial pca plink written 15 months ago by Kevin Blighe33k • updated 3 months ago by genomax59k
40
votes
2
answers
7.7k
views
29 follow
2
answers
41
votes
2
answers
15k
views
15 follow
2
answers
Phased And Unphased Genotypes In Vcf Files: Does The Order Of Alleles Matter?
vcf genotyping written 7.9 years ago by Chronos550 • updated 5.6 years ago by sliders50
83
votes
4
answers
47k
views
26 follow
4
answers
Generate vcf.gz file and its index file vcf.gz.tbi
vcf tabix written 6.0 years ago by lyz10302012310 • updated 12 weeks ago by zx87546.1k
53
votes
6
answers
25k
views
24 follow
6
answers
New Fasta Sequence From Reference Fasta And Variant Calls File?
vcf fasta consensus variant written 7.7 years ago by Gaffa490 • updated 2.0 years ago by FatihSarigol110
32
votes
6
answers
4.9k
views
12 follow
6
answers
Should We Be Using Much More Json In Our Delimited Data Formats?
vcf gff written 7.9 years ago by Casbon3.2k • updated 7.9 years ago by Erik Garrison2.1k
15
votes
0
answers
6.1k
views
8 follow
0
answers
Tool: Vcflib Documentation
vcf tool written 5.7 years ago by Erik Garrison2.1k • updated 13 months ago by DataFanatic110
15
votes
5
answers
5.7k
views
17 follow
5
answers
29
votes
4
answers
6.3k
views
10 follow
4
answers
Forum: Principles of Tidy Data (Hadley Wickham) and the VCF format
vcf data forum tidy written 4.0 years ago by Giovanni M Dall'Olio26k • updated 4.0 years ago by Alex Reynolds26k
48
votes
3
answers
17k
views
31 follow
3
answers
Pca From Vcf Files
vcf genome pca written 6.6 years ago by Rubal7720 • updated 2.5 years ago by mkulecka300
21
votes
7
answers
2.1k
views
7
answers
25
votes
2
answers
11k
views
8 follow
2
answers
Recommendations For Python Vcf Parser/Writer?
vcf python variation variant written 7.0 years ago by Reece250 • updated 7.0 years ago by Erik Garrison2.1k
53
votes
5
answers
32k
views
33 follow
5
answers
Extract Sub-Set Of Regions From Vcf File
vcf genome tabix filter written 6.5 years ago by Rubal7720 • updated 14 months ago by geocarvalho80
42
votes
6
answers
10k
views
13 follow
6
answers
25
votes
2
answers
13k
views
15 follow
2
answers
10
votes
0
answers
2.4k
views
0
answers
14
votes
1
answer
7.1k
views
7 follow
1
answer
18
votes
2
answers
14k
views
8 follow
2
answers
How To Distinguish Heterozygotes And Homozygotes From Variants In Vcf Format?
vcf samtools written 7.2 years ago by Shinvkuo130 • updated 1 day ago by Biostar ♦♦ 20
25
votes
2
answers
11k
views
2
answers
49
votes
4
answers
32k
views
29 follow
4
answers
Filtering Vcf File
vcf indel vcftools snp written 6.3 years ago by bioinfo680 • updated 13 months ago by DataFanatic110
33
votes
6
answers
14k
views
24 follow
6
answers
Multi-Sample Vcf To Phylogenetic Tree.
vcf written 5.2 years ago by William4.3k • updated 2.2 years ago by Sergey Naumenko330
31
votes
2
answers
8.4k
views
10 follow
2
answers
How To Separate Snp Variants From Indel Variants In The Same Vcf File
vcf vcftools written 7.7 years ago by Jianfengmao310 • updated 7.7 years ago by Pierre Lindenbaum115k
28
votes
4
answers
23k
views
13 follow
4
answers
Understanding Vcf File Format
vcf format written 7.0 years ago by Tryingtogetthere160 • updated 6.7 years ago by Jorge Amigo11k
47
votes
7
answers
32k
views
18 follow
7
answers
How Can I Merge A Large Amount Of Vcf Files?
vcf merge vcftools snp written 6.4 years ago by Matt W230 • updated 5 months ago by ATpoint11k
53
votes
7
answers
2.9k
views
11 follow
7
answers
Programming Challenge - Synthetic Whole Genome Vcf
vcf python perl awk written 6.3 years ago by Mahdi Sarmady290 • updated 6.3 years ago by Rm7.8k
22
votes
2
answers
3.6k
views
2
answers
Why Are There Two Alleles For Chromosome X In Males (In 1000Genomes Vcf Files)?
vcf 1000genomes variant written 6.0 years ago by agnieszka110 • updated 6.0 years ago by lh331k
20
votes
5
answers
12k
views
15 follow
5
answers
Comparing Genotypes In Two Vcf Files
vcf genotyping written 6.0 years ago by enza.colonna80 • updated 3.7 years ago by Anop Singh Ranawat0
21
votes
2
answers
6.1k
views
15 follow
2
answers
Best Discordant Pair Structural Variant (Sv) Caller?
vcf sv variant caller discordant written 5.4 years ago by William4.3k • updated 3.1 years ago by Malachi Griffith17k
17
votes
2
answers
8.7k
views
6 follow
2
answers
Merging Vcf Files And Filling In Missing Genotypes
vcf indel merge snp written 8.0 years ago by Allpowerde1.2k • updated 7.9 years ago by Jashapiro230
28
votes
5
answers
6.8k
views
11 follow
5
answers
How To Efficiently Remove Snps That Are Present In All Samples?
vcf samtools snp written 7.7 years ago by Ian5.3k • updated 7.7 years ago by Deniz180
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